[PyMOL] Need help with RMSD ( I am a member of this community now , yayy)

2011-06-15 Thread Babban Mia
Hello Pymol Users I am quite new to python and more specifically to PYTHON ,PYMOL interface hence I urgently need a help from you. I simple need to calculate the RMSD between two pdb files and use that rmsd for further programming but somehow I can not figure how to do it This is what I have

Re: [PyMOL] Need help with RMSD ( I am a member of this community now , yayy)

2011-06-15 Thread Jason Vertrees
Hello, I am quite new to python and more specifically to PYTHON ,PYMOL interface hence I urgently need a help from you. Welcome! This list has about 1500 people on it and is accepting of new users. A couple hints to get you started. First, you can type help commandName in PyMOL to help on a

Re: [PyMOL] Need help with RMSD ( I am a member of this community now , yayy)

2011-06-15 Thread Jason Vertrees
Hi, Just a small doubt cmd.load(pdb%04d.pdb%ener1) cmd.load(pdb%04d.pdb%ener2) so   if ener1 =0001 ener2 =0002 The program will understand  the pdb0001 and pdb0002 in v = cmd.fit(pdb0001 and name CA, pdb0002 and name CA)  or not ? or would I need to assign them some names while loading