Re: [R] apply model predictions over larger area with predict()

2008-10-15 Thread Peter Dalgaard
K. Fleischer wrote: Dear all, I have built glm models based on presences/absences and a number of predictor maps and would like to compute habitat suitability based on the modelled coefficients. I thought this is pretty straight forward and wanted to use predict() and supply the new data

Re: [R] R on 64-bit Windows

2008-10-15 Thread Prof Brian Ripley
On Wed, 15 Oct 2008, Göran Broström wrote: In the R for Windows FAQ (2.7.2) we have under 2.2: There is no specific version for x64 Windows, but the standard 32-bit version works well enough. Does that include the handling of huge data sets? Yes, but 'huge' is not the largest size in the

[R] A cluster package question and request for images

2008-10-15 Thread Bio7
Dear R developers, i'm developing a Java application with a very efficient image transfer api between ImageJ and R. In my next release i can transfer bytes to R very fast with the help of the Rserve application. Furthermore i added an easy to use interface to the clustering algorithm clara in

Re: [R] Fw: Logistic regresion - Interpreting (SENS) and (SPEC)

2008-10-15 Thread Frank E Harrell Jr
Gad Abraham wrote: This approach leaves much to be desired. I hope that its practitioners start gauging it by the mean squared error of predicted probabilities. Is the logic here is that low MSE of predicted probabilities equals a better calibrated model? What about discrimination? Perfect

Re: [R] request: How can we ignore a component of list having no element

2008-10-15 Thread hadley wickham
An alternative approach would be to store 0 x 0 matrices instead of NULLs. This way every object in your list is a consistent type. Hadley On Wed, Oct 15, 2008 at 5:23 AM, Muhammad Azam [EMAIL PROTECTED] wrote: Dear friends There is a list of arrays comprising different no of rows and columns

Re: [R] parameter assessment in differential equation

2008-10-15 Thread Ben Bolker
Benoit Boulinguiez benoit.boulinguiez at ensc-rennes.fr writes: I'd like to know whether R is capable to assess parameters in a model describing the kinetic of a pollutant adsorption onto activated carbon. Start with the deSolve package (especially demo(CCL4model)) Ben Bolker

[R] MLE Constraints

2008-10-15 Thread LFRC
Dears, I'm trying to find the parameters (a,b, ... l) that optimize the function (Model) described below. 1) How can I set some constraints with MLE2 function? I want to set p10, p20, p30, p1p3. 2) The code is giving the following warning. Warning: optimization did not converge (code 1)

Re: [R] Lattice key title color

2008-10-15 Thread Dieter Menne
Meesters, Erik Erik.Meesters at wur.nl writes: is there a way to define the color of the title for the legend in lattice? Getting the right par to set in lattice can be intimidating. I keep the result of trellis.par.get() in a text file and search for the closest match. Dieter

[R] Help Help with sampling

2008-10-15 Thread Alex99
Hi everyone, I have a dataset(named Mydata) which includes 4 different variables named; s1,s2,s3,s4 .Each variable(symptom) has 14 patients. I need to use random sampling to make, 5 different samples from my data with 5 patients in each sample. i.e. using all 4 variables I need to make 5

Re: [R] apply model predictions over larger area with predict()

2008-10-15 Thread Greg Snow
You did not read Peters response close enough. Do: names(areadata) And you will see that the names of your areadata object do not match with what the predict function is expecting. When you create areadata, you need to name the columns (or name them afterwards), it does not automatically

Re: [R] Maximum number of pasted 'code' lines?

2008-10-15 Thread bartjoosen
Hello, Writing 19000 lines of R-script in Excel sounds terrible. Could you provide us some code (please NOT 19000 lines), and the way you generate this with Excel, maybe we can figure out a much shorter/faster way to accomplish the same result? Bart Duncan Murdoch-2 wrote: On 10/14/2008

Re: [R] apply model predictions over larger area with predict()

2008-10-15 Thread K. Fleischer
Dear all, thanx for the quick reply but your ideas have not gotten me further unfortuantely.. after implementing the idea from Thierry my code looks like that now: #b00all is the dataframe with only element used for model fitting #variables .._zui contain the whole are over which to predict

Re: [R] Defining a list

2008-10-15 Thread bartjoosen
maybe: result - list() for (i in 1:10) result[[i]] - rnorm(i) Bart Megh Dal wrote: Can anyone please tell me how to define a list. Suppose I want to define a list object result with length n then want to fill each place of result with different objects. For e.g. i=1 result[1] =

Re: [R] comparing with lead function

2008-10-15 Thread hadley wickham
On Wed, Oct 15, 2008 at 5:59 AM, Michael Pearmain [EMAIL PROTECTED] wrote: Hi All, I've been trying to compare if the previous value in a variable is equal to a binary value..(i.e i want to check if the last event was a yes or no) i've been trying to write some code for this, but it seems

Re: [R] Help Help with sampling

2008-10-15 Thread Peter Dalgaard
Alex99 wrote: Hi everyone, I have a dataset(named Mydata) which includes 4 different variables named; s1,s2,s3,s4 .Each variable(symptom) has 14 patients. I need to use random sampling to make, 5 different samples from my data with 5 patients in each sample. i.e. using all 4 variables I need

Re: [R] Help Help with sampling

2008-10-15 Thread Jorge Ivan Velez
Dear Alex, Is this what you want? # Data set my=read.table(textConnection( X8 X9 X10 X102 X110 X177 X283 X284 X286 X292 X297 X306 X308 X314 0 1 000100000000 0 0 001000000010 0 1 00000

Re: [R] request: How can we ignore a component of list having no element

2008-10-15 Thread Adaikalavan Ramasamy
Try x[ !sapply(x, is.null) ] hadley wickham wrote: An alternative approach would be to store 0 x 0 matrices instead of NULLs. This way every object in your list is a consistent type. Hadley On Wed, Oct 15, 2008 at 5:23 AM, Muhammad Azam [EMAIL PROTECTED] wrote: Dear friends There

[R] Extracting standard error from survreg?

2008-10-15 Thread jpl
Hello, I would like to extract the standard error for the coefficients returned when using survreg. Does anyone know how to do this? Thank you. Joan -- View this message in context: http://www.nabble.com/Extracting-standard-error-from-survreg--tp19994742p19994742.html Sent from the R help

Re: [R] Help Help with sampling

2008-10-15 Thread Alex99
Thanks for the reply Peter, that works BUT the reason I didn't use it, is because I need to calculate the mean and Standard deviation for S1,S2,S3 and S4 in each sample. which means I'll have 5 means for S1, and 5 means for S2 and 5 means for S3 and 5 means for S4 (and at the end I have to get

Re: [R] Doing a Task Without Using a For Loop

2008-10-15 Thread jim holtman
Run Rprof on your script that is updating the dataframe. A dataframe is a list and everytime you access something in the list it can be expensive. Rprof will probably show that a lot of time is spent in the function [[ which is accessing portions of the dataframe. Vectors are much faster because

Re: [R] Help Help with sampling

2008-10-15 Thread Alex99
Thanks for the reply Jorge, that works BUT the reason I didn't use it, is because I need to calculate the mean and Standard deviation for S1,S2,S3 and S4 in each sample. which means I'll have 5 means for S1, and 5 means for S2 and 5 means for S3 and 5 means for S4 (and at the end I have to get

Re: [R] Lattice key title color

2008-10-15 Thread Greg Snow
Another way to look through the possible par settings that hopefully makes it a little less intimidating is: library(TeachingDemos) TkListView(trellis.par.get()) This requires the TeachingDemos package (obviously) and the tcltk package (most have it, but sometimes you need to run R a certain

Re: [R] Lattice key title color

2008-10-15 Thread Dieter Menne
Greg Snow Greg.Snow at imail.org writes: Another way to look through the possible par settings that hopefully makes it a little less intimidating is (completed by DM): library(lattice) library(TeachingDemos) TkListView(trellis.par.get()) Nice; should come handy in other contexts. But with

Re: [R] Extracting standard error from survreg?

2008-10-15 Thread Peter Dalgaard
jpl wrote: Hello, I would like to extract the standard error for the coefficients returned when using survreg. Does anyone know how to do this? Thank you. Joan Apparently, it is summary(mymodel)$table[,2] (Why, oh why, can't Terry allow coef(summary(...)) like we have in lm/glm???

[R] Network meta-analysis, varConstPower in nlme

2008-10-15 Thread Christian Gold
Dear Thomas Lumley, and R-help list members, I have read your article Network meta-analysis for indirect treatment comparisons (Statist Med, 2002) with great interest. I found it very helpful that you included the R code to replicate your analysis; however, I have had a problem replicating your

[R] Error in Switch in KhmaladzeTest

2008-10-15 Thread xiaolu . x . ren
Hey, My dataset has 1 dependent variable(Logloss) and 7 independent dummy variables(AS,AM,CB,CF,RB,RBR,TS) , it's attached in this email. The problem is I cant finish Khmaladze test because there's an error Error in switch(mode(x), NULL = structure(NULL, class = formula), : invalid formula

Re: [R] Lattice key title color

2008-10-15 Thread Greg Snow
Yes, I agree that for searching for specific terms, the file approach is great. I suggested the TkListView more for browsing through the possible parameters to learn what is there and can be changed (and to see what the current values are of those of interest). -- Gregory (Greg) L. Snow Ph.D.

Re: [R] Extracting standard error from survreg?

2008-10-15 Thread Achim Zeileis
On Wed, 15 Oct 2008, Peter Dalgaard wrote: jpl wrote: Hello, I would like to extract the standard error for the coefficients returned when using survreg. Does anyone know how to do this? Apparently, it is summary(mymodel)$table[,2] In order not to compute on the internal structure

Re: [R] ggplot2: sub/super-script axes labels

2008-10-15 Thread stephen sefick
?mathplot but this should work: qplot(1:10,1:10)+scale_y_continuous(expression(Respiration, pmol *O[2]*h^-1)) On Wed, Oct 15, 2008 at 7:45 AM, Adam Marsh [EMAIL PROTECTED] wrote: How are sub/superscripts designated for text in axis labels? As in this y-axis label:

Re: [R] Lattice key title color

2008-10-15 Thread Gabor Grothendieck
Also: str(trellis.par.get()) show it compactly. On Wed, Oct 15, 2008 at 11:18 AM, Greg Snow [EMAIL PROTECTED] wrote: Another way to look through the possible par settings that hopefully makes it a little less intimidating is: library(TeachingDemos) TkListView(trellis.par.get()) This

[R] How to make the connection between MikTEX and R

2008-10-15 Thread Felipe Carrillo
Hi: After a couple of days trying to synchonize or connect MiKTex and R I'm getting a little frustrated. My knowledge about creating and running batch files is kind of limited so, I was wondering if someone could explain in plain english how to do this task. I'm able to run MiKtex by itself and

Re: [R] Help Help with sampling

2008-10-15 Thread Jorge Ivan Velez
Dear Alex, Is this what you want? my=read.table(textConnection( X8 X9 X10 X102 X110 X177 X283 X284 X286 X292 X297 X306 X308 X314 0 1 000100000000 0 0 001000000010 0 1 0000000

Re: [R] YALAQ - Yet Another LApply Question

2008-10-15 Thread Thompson, David (MNR)
Please forgive this repost, it's been a week without a squeak. No comments? Original post: https://stat.ethz.ch/pipermail/r-help/2008-October/176340.html Hello, Two lapply questions (system info and sample data below): 1) Why does the first form of command1 add the name of y _after_ the str()

Re: [R] Labour Statistics

2008-10-15 Thread Max
Ruben, Thankyou for the advice. I'll do what I can with it. Ruben Wrote: If I understand your problem correctly, you have that the magnitude of deviations from the mean/median/mode in the volume of your requests for background checks in month m predicts a multivariate response that represents

[R] Defining a list

2008-10-15 Thread Megh Dal
Can anyone please tell me how to define a list. Suppose I want to define a list object result with length n then want to fill each place of result with different objects. For e.g. i=1 result[1] = rnorm(1) i=2 result[2] = rnorm(2) ... i=n result[n] = rnorm(n) What would

Re: [R] Extracting standard error from survreg?

2008-10-15 Thread jpl
Thanks! This is exactly what I needed. Peter Dalgaard wrote: jpl wrote: Hello, I would like to extract the standard error for the coefficients returned when using survreg. Does anyone know how to do this? Thank you. Joan Apparently, it is summary(mymodel)$table[,2]

[R] Heuristic optimisation?

2008-10-15 Thread Ajay Shah
I wondered was people on this list felt about this article: http://www.voxeu.org/index.php?q=node/2363 which talks about the problems of obtaining sound answers in numerical optimisation in settings such as MLE or NLS. -- Ajay Shah

Re: [R] How to make the connection between MikTEX and R

2008-10-15 Thread Gabor Grothendieck
Suppose foo.Rnw is in \a\b and you have placed MiKTeX in the default place when you installed it and suppose that when you installed R you did not prevent it from writing to the reigstry. Then: 1. Go to the link I gave already, read everything there, go to the download page and download

Re: [R] Error in Switch in KhmaladzeTest

2008-10-15 Thread roger koenker
Hey back, If you had RTFM you would know that the first argument of the function KhmaladzeTest was supposed to be a formula, so try: T - KhmaladzeTest(Logloss~AS+AM+CB+CF+RB+RBR, data=CPBP, nullH=location) url:www.econ.uiuc.edu/~rogerRoger Koenker email[EMAIL

Re: [R] Lattice key title color

2008-10-15 Thread Dieter Menne
Gabor Grothendieck ggrothendieck at gmail.com writes: str(trellis.par.get()) Never thought of that. Really nice. Dieter __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

[R] Help with matplot

2008-10-15 Thread Garcia Carreras, Bernardo
Hi, I apologise in advance for the naïve question. I have large matrices that I want to plot. I currently use color2D.matplot. However, these matrices contain many values of no interest (i.e. where there is no data, the figure -999 is automatically displayed). Is there any way of removing these

Re: [R] Extracting standard error from survreg?

2008-10-15 Thread Peter Dalgaard
Achim Zeileis wrote: On Wed, 15 Oct 2008, Peter Dalgaard wrote: jpl wrote: Hello, I would like to extract the standard error for the coefficients returned when using survreg. Does anyone know how to do this? Apparently, it is summary(mymodel)$table[,2] In order not to compute on

Re: [R] Help with matplot

2008-10-15 Thread jim holtman
What do you mean by removing them? Do you want the whole row/column deleted? Have you tried setting them to NA so that the points are not plotted? You have to be a little more specific on what type of action you want to have happen when the criteria is met. Of course the answer is anything is

Re: [R] Network meta-analysis, varConstPower in nlme

2008-10-15 Thread Christian Ritz
Hi Christian, I believe that the argument var has changed name to weights. The following lines work for me: ... sigma - rep(sqrt(.5), nrow(lumley1)) # not nrow= lme1 - lme(Y1 ~ trt.B + trt.C + trt.D + trt.E, random = ~ 1 | trtpair, data=lumley1, weights = varConstPower(form=~sigma,

Re: [R] Lattice key title color

2008-10-15 Thread Deepayan Sarkar
On 10/15/08, Dieter Menne [EMAIL PROTECTED] wrote: Gabor Grothendieck ggrothendieck at gmail.com writes: str(trellis.par.get()) Never thought of that. Really nice. There's also http://lmdvr.r-forge.r-project.org/figures/figures.html?chapter=07;figure=07_03 All of which doesn't really

[R] investigating interaction term for a model of Gross Primary Productivity

2008-10-15 Thread stephen sefick
I am trying to investigate the interaction term in the below. The paradigm in aquatic systems is that algal production is either nitrogen (TIN) or Phosphorus limited, and I am trying to investigate this- what is the best way to go about investigating the interaction term. I have some thoughts

[R] R on 64-bit Windows

2008-10-15 Thread Göran Broström
In the R for Windows FAQ (2.7.2) we have under 2.2: There is no specific version for x64 Windows, but the standard 32-bit version works well enough. Does that include the handling of huge data sets? What I have read in other places indicates that the answer is No. If so, will there be a 64-bit

[R] [R-pkgs] New versions of two packages: granova and PSAgraphics

2008-10-15 Thread bob pruzek
Dear R users, This is to announce new versions of our packages granova and PSAgraphics, both now v.1.2. granova derives from ‘graphical analysis of variance.’ The package consists of four functions that facilitate seeing basic data as well as standard summary statistics for various ANOVA

Re: [R] Labour Statistics

2008-10-15 Thread Max
Gad Abraham explained : Max wrote: Hi everyone, This is not so much of an R question as a statistics question. I currently work for the largest pre employment screening company in Canada. Upper management has noticed that noticed that usually a month or so before any big kind of economic

[R] Lattice key title color

2008-10-15 Thread Meesters, Erik
Dear R users, is there a way to define the color of the title for the legend in lattice? The help page on xyplot has a lot of details on key options just as the new book, but no mentioning of a color attribute for the title. Should I use ltext or is there any other way? Best wishes, Erik

Re: [R] Maximum number of pasted 'code' lines?

2008-10-15 Thread Paul Hiemstra
Michael Just wrote: Hello, I write most of my R code in excel and then paste it into R. I am wondering if there is a limit to how much I can paste? I want to paste about 19,000 lines of code should this work? I am doing this because when I did it chunks it took about an hour and half. I thought

Re: [R] Defining a list

2008-10-15 Thread Henrique Dallazuanna
Try this: lapply(1:n, rnorm) On Wed, Oct 15, 2008 at 8:19 AM, Megh Dal [EMAIL PROTECTED] wrote: Can anyone please tell me how to define a list. Suppose I want to define a list object result with length n then want to fill each place of result with different objects. For e.g. i=1 result[1]

[R] parameter assessment in differential equation

2008-10-15 Thread Benoit Boulinguiez
Hi, I'd like to know whether R is capable to assess parameters in a model describing the kinetic of a pollutant adsorption onto activated carbon. A common relation is for instance the Adam-Bohart-Thomas' one: dx/dt = K1 * (qm-x)*C - K2x where {K1,K2} are the unknown paramters and {qm,C} are

[R] trouble with combining png and pdf

2008-10-15 Thread Sander Botter
L.S., I would like to add a downsized image to a pdf file and got stuck on the code to use. My goal is to open a pdf device, add a plot, add the downsized image, and then close the pdf device. Making the downsized image is easy using png(), png(file=x.png, width = 600, height = 600,

[R] problems using AFDM(FactoMineR)

2008-10-15 Thread Birgitle
Hello R-list members! I tried to do the following with my dataset that contains factor and numerics, (80columns,about 600 rows) Dataset.afdm-AFDM(Dataset[282:595,], type=TypeVector, ncp=3) Fehler in svd(X) : infinite or missing values in 'x' TypeVector [1] n n n n n n n n n n n n n n n n n n

[R] Problems with R memory usage on Linux

2008-10-15 Thread B. Bogart
Hello all, I'm working with a large data-set, and upgraded my RAM to 4GB to help with the mem use. I've got a 32bit kernel with 64GB memory support compiled in. gnome-system-monitor and free both show the full 4GB as being available. In R I was doing some processing and I got the following

[R] gamboost partial fit prediction

2008-10-15 Thread Angel Spassov
Dear useRs, I am struggling to use gamboost function form the 'mboost' package. More precisely, I am trying to extract the *partial fit* for each of the covariates estimated in a model and I usually end up with this annoying: Error in newdata[[xname]] : subscript out of bounds . I hope that the

Re: [R] Help Help with sampling

2008-10-15 Thread Alex99
Thanks again Jorge, but when I type in lapply(res,function(x) rbind(rowMeans(x)) it's like it's waiting for something else, it doesnt run. I tried help(lapply) to learn more about lappy but didnt give me any result. could you tell me why it doesnt run and what is lapply for? Thanks a lot for

Re: [R] YALAQ - Yet Another LApply Question

2008-10-15 Thread Greg Snow
For the first question, ?str tells us that the str function does not return anything, but has a side effect of printing information to the console. So in version 1 when you call the cat function it evaluates its arguments and as it evaluates str(...) the information is printed, then nothing is

[R] Standard deviation for rows

2008-10-15 Thread Alex99
Hi everyone, I have just started using R, and I have a simple question. How can I get the Standard deviation for rows. basically I am looking for something like rowMeans() but for Standard deviation (I tried rowSds() didn't exist) Thanks, -- View this message in context:

Re: [R] Doing a Task Without Using a For Loop

2008-10-15 Thread Tom La Bone
I want to thank everyone for the help. I ended up having to use a loop to assign values from the table to NinYear. However, as I have played with the full datasets I have noticed that R is MUCH faster if I use vectors in the loop rather than columns of a dataframe. In the specific case of 43,000

Re: [R] help about how can R compute AIC?

2008-10-15 Thread Bernardo Rangel Tura
Em Ter, 2008-10-14 às 17:13 +0200, Arnau Mir Torres escreveu: Hello. I need to know how can R compute AIC when I study a regression model? For example, if I use these data: growth tannin 1 12 0 2 10 1 3 8 2 4 11 3 5 6 4 6 7 5

Re: [R] Problems with R memory usage on Linux

2008-10-15 Thread Prof Brian Ripley
See ?Memory-size On Wed, 15 Oct 2008, B. Bogart wrote: Hello all, I'm working with a large data-set, and upgraded my RAM to 4GB to help with the mem use. I've got a 32bit kernel with 64GB memory support compiled in. gnome-system-monitor and free both show the full 4GB as being available.

Re: [R] Standard deviation for rows

2008-10-15 Thread Nutter, Benjamin
?apply e.g. apply(matrix,1,sd) -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Alex99 Sent: Wednesday, October 15, 2008 1:17 PM To: r-help@r-project.org Subject: [R] Standard deviation for rows Hi everyone, I have just started using R, and I have a

[R] ggplot2: sub/super-script axes labels

2008-10-15 Thread Adam Marsh
How are sub/superscripts designated for text in axis labels? As in this y-axis label: scale_y_continuous(Respiration, pmol O2 h-1) where the 2 needs to be subscripted and the -1 needs to be superscripted. Thanks. Adam --- Adam G.

Re: [R] Lattice key title color

2008-10-15 Thread Dieter Menne
Deepayan Sarkar deepayan.sarkar at gmail.com writes: All of which doesn't really answer the original question. ... So, the title color cannot be currently specified, either directly or through the settings system. Krrr.. it was key$title Dieter

Re: [R] request: How can we ignore a component of list having no element

2008-10-15 Thread Muhammad Azam
Dear Mahbub Thanks a lot for the help. - Original Message From: Mahbub Latif [EMAIL PROTECTED] To: Muhammad Azam [EMAIL PROTECTED] Sent: Wednesday, October 15, 2008 12:30:13 PM Subject: Re: [R] request: How can we ignore a component of list having no element try this, junk -

Re: [R] legend

2008-10-15 Thread Bernardo Rangel Tura
Em Ter, 2008-10-14 às 18:44 -0700, Lavan escreveu: Hi R users, I'm trying to have the symbols for sigma[1] in my legend. the code is given below, please have a look. Thanks, lavan try legend(bottom,legend=expression(sigma[1]),...) legend(bottom,legend=paste(Sigma1=,

Re: [R] investigating interaction term for a model of Gross Primary Productivity

2008-10-15 Thread John Fox
Dear Stephen, I'm not sure exactly what you have in mind, but you might take a look at the effects package. I hope this helps, John On Wed, 15 Oct 2008 12:59:33 -0400 stephen sefick [EMAIL PROTECTED] wrote: I am trying to investigate the interaction term in the below. The paradigm in

Re: [R] Fw: Logistic regresion - Interpreting (SENS) and (SPEC)

2008-10-15 Thread Gad Abraham
This approach leaves much to be desired. I hope that its practitioners start gauging it by the mean squared error of predicted probabilities. Is the logic here is that low MSE of predicted probabilities equals a better calibrated model? What about discrimination? Perfect calibration implies

Re: [R] YALAQ - Yet Another LApply Question

2008-10-15 Thread Thompson, David (MNR)
Thank you very much Greg. Apparently, my learning curve is still well below it's horizontal asymptote. And no wonder in the vast universe of the R-project, eh? Thanx, DaveT. -Original Message- From: Greg Snow [mailto:[EMAIL PROTECTED] Sent: October 15, 2008 01:52 PM To: Thompson, David

[R] Iterative estimation of linear regression model

2008-10-15 Thread Amarjit Singh Sethi
Dear all I am intrested in making iterative estimation (thro' loop statements) of, say, linear regression model. For this purpose, I have written the following programme and that I have made use of a sample data (viz., exp.txt):   Programme:   # Linear regression modelling with sample data

Re: [R] rgl-snapshot failed (err-msg: failed)

2008-10-15 Thread Duncan Murdoch
On 10/10/2008 8:55 AM, Oliver Bandel wrote: Zitat von Duncan Murdoch [EMAIL PROTECTED]: On 10/10/2008 8:13 AM, Oliver Bandel wrote: Hello, I tried to use rgl.snapshot and it failed. The error message was not very verbose: == plot3d( motion[[idx+2]],

Re: [R] Problems with R memory usage on Linux

2008-10-15 Thread repkakala Gazeta.pl
Doen't work. \misiek Prof Brian Ripley wrote: See ?Memory-size On Wed, 15 Oct 2008, B. Bogart wrote: [...] [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do

Re: [R] Standard deviation for rows

2008-10-15 Thread Greg Snow
apply( mymatrix, 1, sd ) Will give the row standard deviations of a matrix or matrix like data frame. There are also some functions in add-on packages that do row sd's or var's. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare [EMAIL PROTECTED] 801.408.8111

Re: [R] Standard deviation for rows

2008-10-15 Thread Alex99
Thanks for the reply, that's exactly what I wanted. I also figured that the function rowSds() does exist. I just needed to load the generfilter package. Thanks again. Nutter, Benjamin wrote: ?apply e.g. apply(matrix,1,sd) -Original Message- From: [EMAIL PROTECTED]

[R] R/Parallel

2008-10-15 Thread Rajasekaramya
Hi there, I am looking for R/parallel package or some other package that would speed up the analysis.I am working on computatioanly intensive data so any suggestions would be really helpful. Kindly let me know if any -- View this message in context:

[R] integrate problem

2008-10-15 Thread Wade Winterhalter
i'm in the process of switch from Maple to R and am trying to code the following function: w(d)=\int -Inf_Inf A(x) |int 0_(t(d)-x) Fy dydx can some one point me in the right direction? i don't seem to be able to figure it out on my own. Dr. Wade Winterhalter University of Central Florida

[R] LME gives estimates with a random factor that has one 1 datapoint per group

2008-10-15 Thread mirre simons
Dear all, I have been fitting models to do meta-analysis in R. This includes a mixed effect model with a weighting function. This weighting function is the sample size and the random factor is study or species for instance (Nakagawa 2007). I have tried this method and I find some strange things.

Re: [R] R/Parallel

2008-10-15 Thread Markus Schmidberger
Hi, have a look to Dirks tutorial at the UseR2008. This should be a good starting point: http://www.statistik.uni-dortmund.de/useR-2008/tutorials/eddelbuettel.html Markus Rajasekaramya wrote: Hi there, I am looking for R/parallel package or some other package that would speed up the

Re: [R] Problems with R memory usage on Linux

2008-10-15 Thread Prof Brian Ripley
Or ?Memory-limits (and the posting guide of course). On Wed, 15 Oct 2008, Prof Brian Ripley wrote: See ?Memory-size On Wed, 15 Oct 2008, B. Bogart wrote: Hello all, I'm working with a large data-set, and upgraded my RAM to 4GB to help with the mem use. I've got a 32bit kernel with 64GB

[R] dbAppy questions/clarifications

2008-10-15 Thread Ted Byers
In the example in the documentation, I see: rs - dbSendQuery(con, select Agent, ip_addr, DATA from pseudo_data order by Agent) out - dbApply(rs, INDEX = Agent, FUN = function(x, grp) quantile(x$DATA, names=FALSE)) Maybe I am a bit thick, but it took me a while, and a kind

[R] Can R scripts executed in batch mode take a commandline argument?

2008-10-15 Thread Ted Byers
I have examined the documentation for batch mode use of R: R CMD BATCH [options] infile [outfile] The documentation for this seems rather spartan. Running R CMD BATCH --help gives me info on only two options: one for getting help and the other to get the version. I see, further on, that

[R] plot - central limit theorem

2008-10-15 Thread Jörg Groß
Hi, Is there a way to simulate a population with R and pull out m samples, each with n values for calculating m means? I need that kind of data to plot a graphic, demonstrating the central limit theorem and I don't know how to begin. So, perhaps someone can give me some tips and hints

Re: [R] plot - central limit theorem

2008-10-15 Thread Greg Snow
Look at the clt.examp function in the TeachingDemos package, it generates samples from normal, uniform, gamma (default exponential), and beta (default U-shaped) distributions and plots histograms of the means along with a reference line of a normal distribution with the same mean and sd. The

[R] Removing characters and periods from character strings

2008-10-15 Thread John Poulsen
Hello R-users, I have code that gives me the important variables from an analysis. I need to input these variables into a different analysis. To do this, I need to modify them slightly... 1) remove all numbers at the end of the variables, 2) remove all periods. I tried to do it with the

Re: [R] plot - central limit theorem

2008-10-15 Thread Duncan Murdoch
On 10/15/2008 3:48 PM, Jörg Groß wrote: Hi, Is there a way to simulate a population with R and pull out m samples, each with n values for calculating m means? I need that kind of data to plot a graphic, demonstrating the central limit theorem and I don't know how to begin. The easiest

[R] help with a for loop

2008-10-15 Thread Quan Li
Hi all, I am running OLS models with a power parameter: y=a+bx^p, and I want to iterate through p with a set increment. The function I constructed is something like below: test-function(data, model,...){ f-formula(model) #model=y~I(x^p) p-0.1 n-10 result-list() while (p=1) { for (i in 1:n) {

Re: [R] plot - central limit theorem

2008-10-15 Thread Tobias Verbeke
Hi Joerg, Is there a way to simulate a population with R and pull out m samples, each with n values for calculating m means? I need that kind of data to plot a graphic, demonstrating the central limit theorem and I don't know how to begin. So, perhaps someone can give me some tips and

Re: [R] Removing characters and periods from character strings

2008-10-15 Thread Prof Brian Ripley
A case for [g]sub: gsub(., , sub([0-9]*$, , pick), fixed = TRUE) On Wed, 15 Oct 2008, John Poulsen wrote: Hello R-users, I have code that gives me the important variables from an analysis. I need to input these variables into a different analysis. To do this, I need to modify them

Re: [R] Removing characters and periods from character strings

2008-10-15 Thread Henrique Dallazuanna
Try this; gsub(\\.|[0-9], , pick) On Wed, Oct 15, 2008 at 4:42 PM, John Poulsen [EMAIL PROTECTED] wrote: Hello R-users, I have code that gives me the important variables from an analysis. I need to input these variables into a different analysis. To do this, I need to modify them

Re: [R] Removing characters and periods from character strings

2008-10-15 Thread Greg Snow
To remove all numbers and periods at the end do: vars - sub([0-9.]+$, , pick ) If there are other periods that this does not remove (not at the end) then you can do a second pass: vars - sub(\\., , vars) Part of the reason that your code for the period does not work is that an unescaped

Re: [R] dbAppy questions/clarifications

2008-10-15 Thread Rolf Turner
I can't help with your inquiry generally, but I can address the issue of ``optional braces''. On 16/10/2008, at 8:34 AM, Ted Byers wrote: snip I take it FUN = function(x, grp) quantile(x$DATA, names=FALSE) is the function definition for a function called FUN. I would guess,

Re: [R] plot - central limit theorem

2008-10-15 Thread Rubén Roa-Ureta
Jörg Groß wrote: Hi, Is there a way to simulate a population with R and pull out m samples, each with n values for calculating m means? I need that kind of data to plot a graphic, demonstrating the central limit theorem and I don't know how to begin. So, perhaps someone can give me some

Re: [R] plot - central limit theorem

2008-10-15 Thread roger koenker
Galton's 19th century mechanical version of this is the quincunx. I have a (very primitive) version of this for R at: http://www.econ.uiuc.edu/~roger/courses/476/routines/quincunx.R url:www.econ.uiuc.edu/~rogerRoger Koenker email[EMAIL PROTECTED]

[R] Condition warning: has length 1 and only the first element will be used

2008-10-15 Thread Joe Kaser
Hello, I've been learning R functions recently and I've come across a problem that perhaps someone could help me with. # I have a a chron() object of times hours=chron(time=c(01:00:00,18:00:00,13:00:00,10:00:00)) # I would like to subtract 12 hours from each time element, so I created a

Re: [R] Condition warning: has length 1 and only the first element will be used

2008-10-15 Thread Greg Snow
The if statement is for program flow control (do this bunch of code if this condition is true, else do this), the vectorized version is the ifelse function, that is the one that you want to use. Also note (this is for times in general, not sure about chron specifically) subtracting noon from

Re: [R] Condition warning: has length 1 and only the first element will be used

2008-10-15 Thread Peter Dalgaard
Joe Kaser wrote: Hello, I've been learning R functions recently and I've come across a problem that perhaps someone could help me with. # I have a a chron() object of times hours=chron(time=c(01:00:00,18:00:00,13:00:00,10:00:00)) # I would like to subtract 12 hours from each time element,

Re: [R] Forecasting using ARIMAX

2008-10-15 Thread Rob Hyndman
Hi Siang Li. It would help if you explained what packages you are using. auto.arima() is in the forecast package and arimax appears to be from the TSA package. Using auto.arima() to select the orders is inappropriate because you are ignoring the regressors. auto.arima() does not currently handle

[R] combining same-day lab measurements with 'apply'

2008-10-15 Thread dylan boyd
Another request for help implementing the 'apply' functions to avoid a loop structure... I am working with a data set that includes lab measurements taken at different dates for the subjects, with some subjects having more results than others. I would like to average lab results for each subject

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