How do you account for the fact that the package passed its checks on
the build machine, e.g.
http://cran.r-project.org/bin/windows/contrib/2.8/check/RWeka-check.log
and no one else is reporting this? (And it does work for me.)
Blaming your tools is easy, but doing so on a public forum is
Thank you very much David...
Can you also describe me how to describe the standard deviation of the
boxplots/matrices ?
David Winsemius wrote:
You do not provide a workable example and it appears you may be
conflating the German and English spellings of group, but perhaps
this code
Hello,
The solution to problem will seem far easier if you think in a different
way. For instance, you may want to consider the extra dummy column
previous.first.value - c( NA, first[ - length(first) ] )
Then you can horizontally compare first with it's previous value.
Best regards,
Carlos J.
Felipe Carrillo mazatlanmexico at yahoo.com writes:
I need help merging rows.
I am trying to merge the 'Month' column using \multirow. For example for the
column 'Week' I want July to be
merged into one row(weeks 27,28,29,30) and so on for the following weeks.
Below, I am creating a PDF using
Or with package ggplot2 :
library(ggplot2)
c - qplot(cyl, mpg, data=mtcars)
c + geom_boxplot(aes(group = factor(cyl))) +
stat_summary(fun = median, geom = line, colour = red) +
stat_summary(fun = function(x) min(x), geom = line, colour = blue) +
stat_summary(fun = function(x) max(x), geom
RON70 ron_michael70 at yahoo.com writes:
Hi Ravi, Thanks for this reply. However I could not understand meaning of
vectorizing the function. Can you please be little bit elaborate on that?
Secondly the package polynomial is not available in CRAN it seems. What is
the alternate package?
Hello and Happy New Year to all R-Users !!!
I would like to plot a lattice graph with a logarthmic y axis and add two
reference lines that is :
ref-c(0.0070, 0.0096)
graph1-xyplot(data$y1 ~ as.numeric(strptime(data$x1, format=%Y-%m-%d
%H:%M:%S)) | as.character(data$Code),
list(y = list(log =
On Sun, 11 Jan 2009, [iso-8859-1] Elsa et Stéphane BOUEE wrote:
Hi all,
I have a question on the package « survey
Please don't send questions to the list and to me separately. Either one is ok,
but not both.
I have some difficulties to use the function calibrate. Although it works
well
Hello,
Would you tell my how to extract a result from a test - it's justified because
I need to run this test many times. Here is an example from authors' test:
library(coin)
lungtumor - data.frame(dose = rep(c(0, 1, 2), c(40, 50, 48)), tumor =
c(rep(c(0, 1), c(38, 2)), rep(c(0, 1), c(43,
Dear list,
I am sorry if this is a FAQ, but I have just started using odfWeave
for report construction and it seems not to behave exactly like
Sweave.
I want to get my figures in grayscale, but the tip given in the FAQ of
Sweave http://www.stat.uni-muenchen.de/~leisch/Sweave/FAQ.html#x1-1A.8
Dear all,
Using lm models one can calculate predicted residual sum of squares
(PRESS) statistic to select appropriate number of prediction variables
in lm model.
Is there any alternative to PRESS statistic for lda (linear discriminant
analysis) model where predicted outcome variable is
Try this:
X$third - rep(X$second[which(!duplicated(X$first))], table(X$first))
On Mon, Jan 12, 2009 at 5:57 AM, Heston Capital hestoncapi...@gmail.comwrote:
I am trying to write some code where the factor references its
previous value, but can't find a solution searching through the
archive.
Hi,
Is there any way to load workspaces (e.g. stuff from save.image) from
the command line? I'm on Linux, and would find this very helpful.
I'm guessing this functionality can be duplicated with a skillful bash
script to rename the particular file to .RData (and then back once R
terminates), but
See ?load
On Mon, Jan 12, 2009 at 10:12 AM, Zhou Fang zhou.zf...@gmail.com wrote:
Hi,
Is there any way to load workspaces (e.g. stuff from save.image) from
the command line? I'm on Linux, and would find this very helpful.
I'm guessing this functionality can be duplicated with a skillful
That's not really what I meant by 'command line'. I meant, well,
loading from e.g. a bash shell, not from within an interactive R
session itself.
Thanks anyways,
Zhou
(Possibly this email was sent twice. Apologies)
On Mon, Jan 12, 2009 at 12:15 PM, Henrique Dallazuanna www...@gmail.com wrote:
On 1/12/2009 6:42 AM, robert-mcfad...@o2.pl wrote:
Hello,
Would you tell my how to extract a result from a test - it's justified
because I need to run this test many times. Here is an example from authors'
test:
library(coin)
lungtumor - data.frame(dose = rep(c(0, 1, 2), c(40, 50, 48)),
Dear all,
I have a simple (I think) question that is troubling me lately:
Is there any main difference between anova() command and aov() command when
performing an ANOVA in Experimental design
analyses?
Thank you for your time,
Ismini
__
On 1/12/2009 8:57 AM, j...@in.gr wrote:
Dear all,
I have a simple (I think) question that is troubling me lately:
Is there any main difference between anova() command and aov() command when
performing an ANOVA in Experimental design
analyses?
The main difference is that aov() *fits*
See if this material is helpful:
http://cran.r-project.org/doc/manuals/R-intro.html#Invoking-R-from-the-command-line
--
David Winsemius
On Jan 12, 2009, at 7:24 AM, Zhou Fang wrote:
That's not really what I meant by 'command line'. I meant, well,
loading from e.g. a bash shell, not from
Hi Hans,
I actaually meant the polynom package (not polynomial, which was a
typo). I am curious as to the main differences between polynom and
PolynomF.
Ron - by vectorizing, I mean that the function fn() can take a vector as an
input and return the function values at all the points in the
Dear R-users,
I would like to assign elements to a list in the following manner:
mylist - list(a = a, b = b, c = c)
To do this I tried
myexpr - expression(a = a, b = b, c = c)
mylist - list( eval(myexpr) )
It ends up by overwriting a when b is assigned and b when c is assigned.
Additionally
Ok, looks like I can do what I want with --args, commandArgs() and an
appropiate .First.
Thanks,
Zhou
On Mon, Jan 12, 2009 at 2:27 PM, David Winsemius dwinsem...@comcast.net wrote:
See if this material is helpful:
Hello
I would like to use the transcan and impute functions from Hmisc library for
single impution.
library(Hmisc)
m1-data.frame(x1=rnorm(20),x2=rnorm(20),x3=rnorm(20))
m1[c(2,4),1]-NA
t1-transcan(~x1+x2+x3,data=m1,imputed=T)
impute(t1)
Fehler in as.environment(pos) : kein
Another possibility is to have a separate directory
for each project and place an .RData file in each.
Now just cd to whatever directory corresponds to the
project you wish to work on and start R normally.
No code is needed.
On Mon, Jan 12, 2009 at 10:04 AM, Zhou Fang zhou.zf...@gmail.com wrote:
I think this is glossing over 9.7 of 'The R Inferno'.
You aren't telling us what you really want to achieve.
It seems hard for me to believe that the approach
you are taking is going to be the easiest route to
whatever that is.
Patrick Burns
patr...@burns-stat.com
+44 (0)20 8525 0696
The purpose of this is not clear but depending on what a and b are you
might be able to use a data frame (which is a list):
a - 1:2; b - 3:4
data.frame(a, b)
a b
1 1 3
2 2 4
On Mon, Jan 12, 2009 at 9:42 AM, Skotara nils.skot...@uni-hamburg.de wrote:
Dear R-users,
I would like to assign
Well, that isn't ideal for my purposes. (A little context - basically
I have a script that I'm running for a lot of simulations, which is
kinda buggy, and what I'm doing is I'm having the script periodically
save whatever it has done so far to an automatically named file. Then
if something odd
johnhj jhar...@web.de wrote:
Can you also describe me how to describe the standard
deviation of the boxplots/matrices ?
Try tapply:
x -read.table(file=test.txt)
x$group - rep(1:8, each=5)
boxplot(V3~gruppe, data=x)
with(x, tapply(V3, gruppe, sd))
Mike
I have one final question...
How can I save a CSV ifile with ; separation in stead of , separation?
I know the write.csv(file=filename.csv) an that you can use sep=; when
you open a .csv file, but that doesn't work with the write.csv command.
--
View this message in context:
Hi everyone.
I was running correspondence analysis in R with the package 'ca' and I
got a error message that I could not solve.
summary(ca(gui))
Error in svd(S) : infinite or missing values in 'x'
#where gui is my dat table as follows:
0 90 1 1
0 90 0 0
0
Dear list,
I am trying to download a text file from an ftp site using download.file().
I used the following code:
url -
ftp://ftp.wcc.nrcs.usda.gov/data/snow/snow_course/table/history/idaho/13e19.txt;
dest - c:/test/downloadtest.txt
download.file(url, dest)
I get this error message,
hi,
I'm looking for R codes that can do modified Pearson correlation that corrects
for spatially correlated variables.
thanks,
Mélanie-L. Le Blanc
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the
Dear all,
I have a dataframe of 3 columns, consisting of 'longitude', 'latitude'
and a corresponding 'value'. Where identical 'longitude' and 'latitude'
pairs occur more than once, I want their corresponding 'value' to be
summed and the 'pair' to only appear once.
For example:
long lat
Thank you Patrick and Gabor!
Sorry, I think I have not explainend it well.
The purpose is as follows:
names - letters[1:3]
values - data.frame(a = 1:3, b = 4:6, c = 7:9)
With more complicated objects similar to 'names' and 'values' I wrote
the following line to assign the elements of the
Try using:
write.table(..., sep=;)
write.csv just calls write.table
On Mon, Jan 12, 2009 at 6:38 AM, Sake tlep.nav.e...@hccnet.nl wrote:
I have one final question...
How can I save a CSV ifile with ; separation in stead of , separation?
I know the write.csv(file=filename.csv) an that you
Try using do.call:
do.call(list, as.list(mycommand))
On Mon, Jan 12, 2009 at 1:58 PM, Skotara nils.skot...@uni-hamburg.dewrote:
Thank you Patrick and Gabor!
Sorry, I think I have not explainend it well.
The purpose is as follows:
names - letters[1:3]
values - data.frame(a = 1:3, b =
Try this:
aggregate(dt$value, list(long = dt$long, lat = dt$lat), FUN = sum)
On Mon, Jan 12, 2009 at 1:52 PM, Steve Murray smurray...@hotmail.comwrote:
Dear all,
I have a dataframe of 3 columns, consisting of 'longitude', 'latitude'
and a corresponding 'value'. Where identical
This still isn't clear. In your post, values is already
a list with the required names and values in it so the
whole exercise is pointless -- you are starting
out with the answer.
Just guessing, but maybe your setup is a set of variables
in your workspace and a vector of their names with the
write.csv does exactly what you would expect ... creates a *Comma*
Separated Values file. If you don't want a comma separated value
format then use write.table with sep=;
You can still name it whatever.csv.
Or you if you also intend commas for decimal points, use write.csv2
as described
try aggregate(), e.g.,
dat - read.table(textConnection(long lat value
10 20 5
6 2 3
27-3 9
10 20 10
4 -1 0
6 2 9), header = TRUE)
closeAllConnections()
aggregate(dat[value], list(Long = dat$long, Lat = dat$lat), sum)
I
Mélanie-Louise Leblanc melanie-louise.leblanc.1 at ulaval.ca writes:
hi,
I'm looking for R codes that can do modified Pearson correlation that corrects
for spatially correlated variables.
thanks,
Mélanie-L. Le Blanc
I think you may need to find the answer to the
Hello again,
I studied your suggestion but still I disagree. You wrote:
From the way you wrote the problem I assumed
that there is some number of n looks at the subject and then you count them
up.
But this is not the case. My data is clearly continuous quantities and no
discrete choices. I
Felipe Carrillo wrote:
I am trying to merge the 'Month' column using \multirow. For example for
the column 'Week' I want July to be merged into one row(weeks 27,28,29,30)
and so on for the following weeks.
Below, I am creating a PDF using Sweave, MikTex,R-2.8.1 and windows XP to
show an
Apologies if this isn't acceptable for the general help list.
I'm running OpenBUGS model via the R2WinBUGS package interface, under
Windows. Is it possible to terminate running models, short of using the
Windows Task Manager to forcibly exit the program?
Regards,
Richie.
Mathematical
Thanks - that's great!
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Choose the perfect PC or mobile phone for you
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
Hi -
I am interested in solving variance components for the data below with
respect to the response variable, Expression within R.
However, the covariates aren't independent and they also have a class
(of which the total variance explained by covariates in that class I am
most interested in).
First, try the example in the test file (tests/internet.R)
read.table(ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat;)
or
download.file(ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat;,
test
That is known to work on many, many R systems.
I get the same error as you on that URL,
I ran your script on Windows Vista Ultimate, SP1 and it worked fine:
## R start...
url -
'ftp://ftp.wcc.nrcs.usda.gov/data/snow/snow_course/table/history/idaho/13e19.txt'
dest - //PFO-SBS001/Redirected/tonyb/Desktop/test/downloadtest.txt
download.file(url, dest)
trying URL
One of undoubtedly many ways:
# kind of a pain to delete the blank rows. Try to give us full example
next time?
txt- long lat value
+ 10 20 5
+ 6 2 3
+ 27-3 9
+ 10 20 10
+ 4 -1 0
+ 6 2 9
+
DF2 -
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
I need to store each matrix generated in a loop.
I've been working with the CUSUM algorithm and I've been trying to implement
it in R.
What I need to do with my dataset is to create 1000 randomized datasets and
cumulative sum them all and store all of those randomized CUSUMed datasets
for
You might want to try the
https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
list next time for mixed model questions.
At any rate the Variance column figures are variances, not percentages.
We can use anova with REML=FALSE to make comparisons among
models. Below we find that removing the
If you are satisfied with the structure of cusumA and just want 999
more randome realizations of the same, then try creating an empty list
to hold the 1000 dataframes you are creating and then accumulate
sequentially to the list.
mat - matrix(data=rep(c(1,2,3,4,5), 16), nrow=16, ncol=5)
On Mon, 12 Jan 2009, c...@witthoft.com wrote:
[nothing deleted]
matplot(1:100, lm(rnorm(100)~poly(1:100,4),x=T)$x ) # for example
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PLEASE do read the posting guide
Richard.Cotton at hsl.gov.uk writes:
Apologies if this isn't acceptable for the general help list.
I'm running OpenBUGS model via the R2WinBUGS package interface, under
Windows. Is it possible to terminate running models, short of using the
Windows Task Manager to forcibly exit the
Dear R-Users,
I'm trying to set up a repeated measures anova with two within subjects
factors. I tried it by 3 different anova functions: aov, Anova (from car
package) and lme (from nlme package). I managed to get the same results with
aov and Anova, but the results that I get from lme are
Hello,
I am trying to run a mixed effects nested ANOVA but none of my codes
are giving me any meaningful results and I am not sure what I am doing
wrong. I am a new user on R and would appreciate some help.
The experimental design is that I have some frogs that have been
exposed to three acoustic
This is similar to another current post about RMySQL crashing R, except on
the other post it crashed on connection to the database. I can successfully
connect, and even can do dbListTables(). But, if I send a query or anything
to actually see the data, R crashes to desktop.
I have tried this
Hi:
This is what my table should look like:
Month Week EstpassageMedFL
July-27456634
-28256835
-29328736
-30462337
Aug--31863237
--32423638
Thank you for the input on rpart -- I just saw the message today.
1. You are right, it should not crash. Why it crashes rpart is simply that I
(the author) never ever tried using interval censored data in the call. Real
users try the most amazing things
I'll fix it in my local
On 1/12/2009 1:02 PM, auburneconomics wrote:
This is similar to another current post about RMySQL crashing R, except on
the other post it crashed on connection to the database. I can successfully
connect, and even can do dbListTables(). But, if I send a query or anything
to actually see the
Look at the rgroup and n.rgroup arguments of ?latex
function in Hmisc package or ?print.xtable in xtable package.
On Mon, Jan 12, 2009 at 1:48 PM, Felipe Carrillo
mazatlanmex...@yahoo.com wrote:
Hi:
This is what my table should look like:
Month Week EstpassageMedFL
Thanks a lot Dieter, I'll play a little bit with it. Also thanks for the hint
on how to post a latex reproducible example.
--- On Mon, 1/12/09, Dieter Menne dieter.me...@menne-biomed.de wrote:
From: Dieter Menne dieter.me...@menne-biomed.de
Subject: Re: [R] merge table rows (\multirow)
To:
any useful books for learning the R statistical software?
are they pricey?
and if the books recommended focus on S, how compatible will they be for
someone learning R?
thank you in advance for your help.
P.S.
specialized survey statistical procedures? Is R good at that?
[[alternative
please send me the
GarchOxFit Interface
thanks
_
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[[alternative HTML version deleted]]
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For those R user's who don't subscribe to R-sig-db and are having
troubles with the latest RMySQL binary on CRAN, please read the email
thread at the end of this message.
RMySQL 0.7-2 does work with MySQL 5.1, however the CRAN binary is linked
against the 5.0 version.
Best,
Jeff
Duncan Murdoch-2 wrote:
On 1/12/2009 1:02 PM, auburneconomics wrote:
This is similar to another current post about RMySQL crashing R, except
on
the other post it crashed on connection to the database. I can
successfully
connect, and even can do dbListTables(). But, if I send a query
I'm a programmer, not a mathmatician. I heard about R, and I'm wondering if
anyone can tell me if there is an existing R function that can help with a
problem we're currently trying to find an algorithm for. If R is not the
answer, but you can recommend a known algorithm, that would help a lot!
Look here to start.
http://www.r-project.org/doc/bib/R-books.html
Steve Friedman Ph. D.
Spatial Statistical Analyst
Everglades and Dry Tortugas National Park
950 N Krome Ave (3rd Floor)
Homestead, Florida 33034
steve_fried...@nps.gov
Office (305) 224 - 4282
Fax (305) 224 - 4147
Hi gbh22,
your problem looks a lot like a Cutting Stock Problem,
http://en.wikipedia.org/wiki/Cutting_stock_problem
Here, a_ij is your case pack profiles (how many of size j are in case
pack i), x_i counts how many units of case pack i you want, and q_j
counts how many units of size j you
Robert Wilk wrote:
any useful books for learning the R statistical software?
are they pricey?
Many. Useful depends on the reader, though, so look around. Here's a
starting point
http://www.r-project.org/doc/bib/R-books.html
(modesty should forbid me to point at item 18 on the list and the
Mukta Chakraborty chakraborty.mukta at gmail.com writes:
Hello,
I am trying to run a mixed effects nested ANOVA but none of my codes
are giving me any meaningful results and I am not sure what I am doing
wrong. I am a new user on R and would appreciate some help.
The experimental design is
Dear R users:
I have a data set that looks something like this:
IDtime y
12/01/20084
12/09/200812
19/01/20088
21/06/20083
23/01/20084
23/09/20089
26/03/20084
31/02/20083
31/10/20088
32/02/20087
3
Robert,
I have Peter's book and I think it can be a very good place to start
from... dispite the discount... :)
If you like spatial analysis you can try to look for Roger Bivand et
al. Applied Spatial Data Analysis with R, If you are into something
else try the Use R collection from
On Jan 12, 2009, at 3:36 PM, Robert Wilk wrote:
any useful books for learning the R statistical software?
are they pricey?
Compared to medical texts, they are dirt cheap.
and if the books recommended focus on S, how compatible will they be
for
someone learning R?
Many are available
Well. *_* ,
I think it should have been clear that this was not a question for which
any code exists. In fact, I gave two very specific examples of function
calls. The entire point of my question was not what's up with my
(putative) code and data but rather to try to understand the
On Friday 09 January 2009, Joe Conway wrote:
Dylan Beaudette wrote:
Subsequent calls to:
conn - dbConnect(PgSQL(), host=localhost, dbname=xxx, user=xxx)
query - dbSendQuery(conn, query_text)
res - dbGetResult(query)
are resulting in this:
*** glibc detected ***
[E] Y = a + b*sin(d*x+phi)
isn't a linear model and therefore can't be estimated with lm() --
you will need
some heavier artillery. Linear as in lm() means linear in parameters.
(As it happens, I'm adapting Gordon Smyth's pronyfreq S code for the
above
problem this afternoon, and have
Julia,
I had a similar query a while ago which I solved using
a suggestion from Gabor, have a look at:
http://finzi.psych.upenn.edu/R/Rhelp02a/archive/69597.html
Hope it helps,
Augusto
Augusto Sanabria. MSc, PhD.
Mathematical Modeller
Risk Impact
I had trouble getting my output to look like yours until I realized
that you did not want to sum up the weekly data to the monthly level
but rather to sum up to the monthly *and* ID level.
dftag-aggregate(dft$y, list(ID=dft$ID, Month=as.yearmon(dft$time,
%m/%d/%Y)), FUN=sum)
# in Month
I find the simplest way to interpret a *linear* model formula, as used by lm()
and aov() is to take the left hand side as specifying the response variable (or
variables) and to take the right hand side as specifying the *columns of the
model matrix* in a coded way. Notice that the parameters
Try this. First we read in the data. In reality you would use
the commented out read line. Then use chron to convert
the times to chron dates and as.yearmon from zoo to convert
them to year/months. Finally aggregate and sort.
Lines - IDtime y
+ 12/01/20084
+ 1
I am having a hard time understanding the documentation and I was wondering if
there would be someone to help clear the cobwebs.
The documentation for pmax states:
pmax and pmin take one or more vectors (or matrices) as arguments and return a
single vector giving the ‘parallel’ maxima (or
I am having a hard time understanding the documentation and I was wondering if
there would be someone to help clear the cobwebs.
The documentation for pmax states:
pmax and pmin take one or more vectors (or matrices) as arguments and return a
single vector giving the ‘parallel’ maxima (or
Hello:
I've come to a dead-end in my search for a solution to a graphing problem that
I am encountering. I have used xyplot (from the lattice package) successfully
to plot 36 time-series plots (lines) of under-5 mortality for a set of
countries in Sub-Sarahan Africa.
What I would now like to
There is an example in the example section of the ?xyplot.zoo help page
in the zoo package.
On Mon, Jan 12, 2009 at 8:16 PM, Josip Dasovic j...@sfu.ca wrote:
Hello:
I've come to a dead-end in my search for a solution to a graphing problem
that I am encountering. I have used xyplot (from the
Dear all,
I have the following matrix:
str(mat)
Named chr [1:32268] yQAAA jQAAQ UQAAg FQAAw 1QABA ...
- attr(*, names)= chr [1:32268] CA CC
CG CT ...
I want to destroy the attribute yielding only this:
str(mat)
Named chr [1:32268] yQAAA jQAAQ UQAAg FQAAw
Here are a couple of quick examples that may help:
1:10
[1] 1 2 3 4 5 6 7 8 9 10
10:1
[1] 10 9 8 7 6 5 4 3 2 1
pmax( 10:1, 1:10 )
[1] 10 9 8 7 6 6 7 8 9 10
pmin( 1:10, 5 )
[1] 1 2 3 4 5 5 5 5 5 5
In the first example with pmax, there are 2 vectors being compared
Is this what you want:
x - c(a=1, b=2, c=3)
str(x)
Named num [1:3] 1 2 3
- attr(*, names)= chr [1:3] a b c
names(x) - NULL
x
[1] 1 2 3
On Mon, Jan 12, 2009 at 8:32 PM, Gundala Viswanath gunda...@gmail.com wrote:
Dear all,
I have the following matrix:
str(mat)
Named chr [1:32268]
Your mat variable is not a matrix, but a vector (a named vector), therefore it
does not have dimensions or dimnames.
Try names(mat) - NULL
Hope this helps,
--
Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg.s...@imail.org
801.408.8111
-Original
damn.
My apologies to everyone -- I sent one message and it got destroyed somehow.
Here's the part that was missing, which led to rather a lot of confusion
on all parts.
The two recent responses to a question about lm suggested
1) lm(y~poly(x,2))
2) lm(y~I(x^2))
So my question was
Dear all,
Suppose I have the following vector as repository:
repo - c(AAA, AAT, AAC, AAG, ATA,ATT)
Given another query vector
qr - c(AAC, ATT)
is there a way I can find the query index in repository in a fast way.
Giving:
[1] 3 6
Typically the size of repo is around ~12million element,
I appreciate alll helpers for R.
I have struggled with Rweka problem related with tm text mining package in R.
My problem was solved when I replaced RWeka_0.3-15.zip with
RWeka_0.3-13.zip under the OS of Win XP.
Now my tm package works fine in R. I don't know why it works.
Thanks all who gave
Hi Jorge and all,
How can I modified your code when
query size can be bigger than repository,
meaning that it can contain repeats.
e.g. qr - c(AAC, ATT, ATT,AAC, ATT, ATT, AAT, ATT, ATT, )
Sorry, I should have mentioned this earlier.
- Gundala Viswanath
Jakarta - Indonesia
On Tue, Jan
Hello,
I am running polychoric correlations on a dataset composed of 12 ordinal and
binary variables (N =384), using the polycor package.
One of the association (between 2 dichotomous variables) is very high using
the 2-step estimate (0.933 when polychoric run only between the two
variables; but
Try this to see the X matrix that its fitting y to:
x - 1:10
model.matrix(~ poly(x, 2))
model.matrix(~ I(x^2))
On Mon, Jan 12, 2009 at 9:01 PM, Carl Witthoft c...@witthoft.com wrote:
damn.
My apologies to everyone -- I sent one message and it got destroyed somehow.
Here's the part that was
Dear all,
I tried to find index in repo given a query with this:
repo - c(AAA, AAT, AAC, AAG, ATA, ATT)
qr - c(AAC, ATT, ATT)
which(repo%in%qr)
[1] 3 6
Note that the query contain repeating elements, yet
the output of which only returns unique.
How can I make it returning
[1] 3 6 6
Is this what you want:
repo - c(AAA, AAT, AAC, AAG, ATA,ATT)
qr - c(AAC, ATT, ATT,AAC, ATT, ATT, AAT, ATT, ATT)
match(qr, repo)
[1] 3 6 6 3 6 6 2 6 6
On Mon, Jan 12, 2009 at 9:22 PM, Gundala Viswanath gunda...@gmail.com wrote:
Hi Jorge and all,
How can I modified your code when
query
Yes Jim, exactly.
BTW, I found from ?match
Matching for lists is potentially very slow and best avoided
except in simple cases.
Since I am doing this for million of tags. Is there a faster alternatives?
- Gundala Viswanath
Jakarta - Indonesia
On Tue, Jan 13, 2009 at 12:14 PM, jim
Is this fast enough for you; matches of 2000 against 2M tags takes 0.2 seconds:
str(x)
chr [1:2000] EAEDC DACCD BEAAD CDDDA ABDCA ACACC DADAA
ABCAD ...
str(z)
chr [1:200] EAEDC DACCD BEAAD CDDDA ABDCA ACACC
DADAA ABCAD ...
system.time(y - match(x,z))
user system elapsed
0.2
1 - 100 of 112 matches
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