Re: [R] list substring

2009-04-02 Thread calpeda
I was suggested to use x = data.frame(string = c( x1, x2, x3)) x apply(x,1,substr,1,4) and it's worked good! Thank you all Wacek Kusnierczyk wrote: calpeda wrote: thank you, but I m importing data from a txt file and I have a matrix of n*1 The function str seems to work

[R] Tick label orientation

2009-04-02 Thread Murray Jorgensen
I had hoped that plot(c(0,24),c(0,-6),xlab=Time,ylab=Day, type=n, main=This Week,axes=FALSE) axis(2,at=0:(-6), labels = c(Sun,Mon,Tues,Wed,Thurs,Fri,Sat),hadj=TRUE) axis(1,at=seq(0,24,4)) would give me horizontal tick labels. It doesn't. What would? Murray -- Dr Murray Jorgensen

[R] Sparse PCA problem

2009-04-02 Thread Alex Roy
Dear R user, I want to do sparse principal component analysis (spca). I am using elastic net package for this and spca() and the code is following from the example. My question is How can I decide the *K =? *and *para=c(7,4,4,1,1,1)) . So, here k=6 i.e the no of Principal

[R] A question about forecasting with R

2009-04-02 Thread minben
I want to forecaste the call number everyday for a call-center. Now I have removed the influence of the fluctuation with some method, so only thing left is to analyze the trend of the call number every day. I have thought of two ways: regression and HoltWinters smooth. But when I use regression, I

Re: [R] Tick label orientation

2009-04-02 Thread Dieter Menne
Murray Jorgensen wrote: I had hoped that plot(c(0,24),c(0,-6),xlab=Time,ylab=Day, type=n, main=This Week,axes=FALSE) axis(2,at=0:(-6), labels = c(Sun,Mon,Tues,Wed,Thurs,Fri,Sat),hadj=TRUE) axis(1,at=seq(0,24,4)) would give me horizontal tick labels. It doesn't. What

Re: [R] paste to collapse vector to string

2009-04-02 Thread Dieter Menne
Xiao-Jun Ma-2 wrote: I'm trying to collapse a character vector to strings, but I am getting unexpected behaviors in list context: A - a B - c(b,c) xx - list(A=A, B=B) lapply(xx, paste, collaplse=.) Typing error in collapLse Dieter -- View this message in context:

[R] request: cost complexity parameter k

2009-04-02 Thread Muhammad Azam
Dear R community I have a question regarding the value of cost complexity parameter k used in tree package for pruning purpose. In the example below i used k=0. But if i take the value k=NULL, then it will not plot the resultant tree. Any help in finding the optimum value of k is requested.

[R] discriminant analyse

2009-04-02 Thread Benedikt Niesterok
Hello everybody, I would like to carry out a discriminant analyse.I have two variables: eye diameter and body length. I have values for different areas and would like to separate those areas from each other according to the variables. Taking the raw data returns a cloud of points.The areas don't

Re: [R] Definition of = vs. -

2009-04-02 Thread Wacek Kusnierczyk
Peter Dalgaard wrote: Wacek Kusnierczyk wrote: Stavros Macrakis wrote: `-` Error: object - not found that's weird! Why??? partly because it was april fools. but more seriously, it's because one could assume that in any syntactic expression with an operator involved, the

Re: [R] Definition of = vs. -

2009-04-02 Thread Wacek Kusnierczyk
Wacek Kusnierczyk wrote: and btw. the following is also weird: quote(a=1) # 1 not because '=' works as named argument specifier (so that the result would be something like `=`(a, 1)), i meant to write: not because '=' does not work as an assignment operator (or otherwise the

[R] Problem with Dates :-(

2009-04-02 Thread Suresh_FSFM
Dear R users, I know, the question is bit old one. :-( Ok. I have a table with say three columns and 70 rows. The second column has dates in format dd.mm.yy (i.e. 01.10.07 indicating record for October 1, 2007). I read the text file, containing the records. Now, I want to find out the weekday

Re: [R] how to sort and group the data?

2009-04-02 Thread baptiste auguie
try this, d = read.table(textConnection(USER NAME 12 admin 12 admin 10 admin 10 advertising 61 process 17snapshot 61ticket 61ticket 30snapshot 10advertising 10advertising 10advertising 10advertising ),head=T) str(d) # note that NAME is a

[R] Start Klimt from R

2009-04-02 Thread Maxl18
Hello, I want to start Klimt from S.Urbanek directly from R. In the description of klimt is the following R-Code: source(klimt.r); d-read.table(mydataset.txt); t-tree(OUT2~.,d); Klimt(t,d); One should make sure, that the klimt.jar is in the working directory of R (in my case C:\Program

[R] Time series analysis with irregular time-series

2009-04-02 Thread Wesley Roberts
Dear R users I am currently investigating time series analysis using an irregular time series. Our study is looking at vegetation change in areas of alien vegetation growth after clearing events. The irregular time series is sourced from Landsat ETM+ data, over a six year period I have 38

Re: [R] Constrined dependent optimization.

2009-04-02 Thread Paul Smith
As I told you before, without knowing the definition of your function f, one cannot help much. Paul On Wed, Apr 1, 2009 at 3:15 PM, rkevinbur...@charter.net wrote: Thank you I had not considered using gradient in this fashion. Now as an add on question. You (an others) have suggested using

[R] how to sort and group the data?

2009-04-02 Thread Hemavathi Ramulu
HI, I need help.. How to sort and group the data below:- USER NAME 12 admin 12 admin 10 admin 10 advertising 61 process 17snapshot 61ticket 61ticket 30snapshot 10advertising 10advertising 10advertising 10advertising I want to plot graph using

[R] Environments

2009-04-02 Thread Philip Whittall
Dear List, No doubt I am going around this the wrong way, and hopefully one of you will be able to tell me how to go about it the right way. I want to change the names of an object inside a function and have it stay changed in the global environment. I can only effect the change inside the

Re: [R] Plotting multiple ablines

2009-04-02 Thread Uwe Ligges
Rolf Turner wrote: On 2/04/2009, at 7:04 AM, Thomas Levine wrote: I really want to do this: abline( a=tan(-kT*pi/180), b=kY-tan(-kT*pi/180)*kX ) where kX,kY and kT are vectors of equal length. But I can't do that with abline unless I use a loop, and I haven't figured out the least

Re: [R] Start Klimt from R

2009-04-02 Thread Uwe Ligges
Maxl18 wrote: Hello, I want to start Klimt from S.Urbanek directly from R. In the description of klimt is the following R-Code: source(klimt.r); d-read.table(mydataset.txt); t-tree(OUT2~.,d); Klimt(t,d); One should make sure, that the klimt.jar is in the working directory of R (in my case

[R] Plots of envfit (vegan) - placing of vector labels

2009-04-02 Thread Jan Thiele
Dear R folks While preparing figures of 'envfit' plots with vegan for publication, I ran into a layout problem, that I found no solution for in the literature or the help archive: The labels of the vectors that indicate correlations of environental variables sometimes overlap with each

Re: [R] FW: How to specify axis interval unit...

2009-04-02 Thread Uwe Ligges
V Prasanth wrote: Dear Duncan Murdoch: Thanks for your tips. By the way, I think I didn't mentioned my question very clear. What I mean to say is that, in Excel one could decide upon the axis interval unit. Please see the attached file. Likewise, is it possible in R...? See ?axis Uwe

Re: [R] discriminant analyse

2009-04-02 Thread Uwe Ligges
Benedikt Niesterok wrote: Hello everybody, I would like to carry out a discriminant analyse.I have two variables: eye diameter and body length. I have values for different areas and would like to separate those areas from each other according to the variables. Taking the raw data returns a

Re: [R] Request: Optimum value of cost complexity parameter k in tree package

2009-04-02 Thread Uwe Ligges
Muhammad Azam wrote: Dear R community I have a question regarding the value of cost complexity parameter k used in tree package for pruning purpose. Any help in finding the optimum value of k is requested. Please give some suggestion in this regard. In the example below i used k=0 but i don't

Re: [R] Help with tm assocation analysis and Rgraphviz installation.

2009-04-02 Thread Uwe Ligges
For 2nd question: a) This is a question that is supposed to go to the BioC list, because we are talking about a BioC package. b) The following worked for me in January (but we might have new versions of something): 1. Install the current package from the BioC website (strongly assuming

Re: [R] Wrong path to user defined library for the R Help Files

2009-04-02 Thread Uwe Ligges
Breitbach, Nils wrote: Dear R-Community, since I work on a PC at the University I have not the necessary rights for all devices and therefore my library is located on a net device. The installation process worked and everything is right apart from one little thing - the help files. When I

Re: [R] Problem with Dates :-(

2009-04-02 Thread Uwe Ligges
Suresh_FSFM wrote: Dear R users, I know, the question is bit old one. :-( Ok. I have a table with say three columns and 70 rows. The second column has dates in format dd.mm.yy (i.e. 01.10.07 indicating record for October 1, 2007). I read the text file, containing the records. Now, I want to

[R] help regarding converting the available date in right date

2009-04-02 Thread Suresh_FSFM
Dear R users, I have a table with say three columns and 70 rows. The second column has dates in format dd.mm.yy (i.e. 01.10.07 indicating record for October 1, 2007). I read the text file, containing the records. Now, I want to find out the weekday for each date. However, I cannot do so.

[R] Odp: how to sort and group the data?

2009-04-02 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 02.04.2009 11:14:34: HI, I need help.. How to sort and group the data below:- USER NAME 12 admin 12 admin 10 admin 10 advertising 61 process 17snapshot 61ticket 61ticket 30snapshot 10advertising 10

Re: [R] problems with package tutorial

2009-04-02 Thread Uwe Ligges
You have so many strange special characters (including different quotes at strange places) below, that it is impossible to find out anything. If you are using the same editor you are writing your e-mails with, I am sure you will have diverse problems with your code Uwe Ligges

Re: [R] About the proportion of data

2009-04-02 Thread Uwe Ligges
Tammy Ma wrote: Hi, All. I have scatterplot in 2-D I'd like to see which proportion of data goes into a range. How shall I figure it out? Perhaps some accumulative graph or something? See ?hist and it argument breaks as well as ?cut Uwe Ligges Kind regards, Tammy

Re: [R] A question about forecasting with R

2009-04-02 Thread Uwe Ligges
a) This is the *R-help* mailing list. If you want others to make your data analyses, there are consultants around ... b) If you still want help from the list, follow the posting guide and provide relevant information such as some insight to your data. Not many of us are clairvoyants and

Re: [R] help regarding converting the available date in right date

2009-04-02 Thread Uwe Ligges
I have answered almost the same question a few minutes ago. Why do you send questions more than once? It won't make responses quicker but will confuse people who spend their time in answering messages who do not see that the questions is already answered in another thread Uwe Ligges

Re: [R] Matrix multiplication - code problem

2009-04-02 Thread Uwe Ligges
MarcioRibeiro wrote: Hi listers, I am having some trouble in a matrix multiplication... I have already checked some posts, but I didn't find my problem... I have the following code... But I am not getting the right multiplication... I checked the dimension and they are fine... id_y -

Re: [R] A question about forecasting with R

2009-04-02 Thread Gabor Grothendieck
The forecast package has a number of forecasting methods you could try. On Thu, Apr 2, 2009 at 3:17 AM, minben minb...@gmail.com wrote: I want to forecaste the call number everyday for a call-center. Now I have removed the influence of the fluctuation with some method, so only thing left is to

Re: [R] How do I add a rug to a 3d 'persp' plot?

2009-04-02 Thread Uwe Ligges
RJCallahan wrote: Hi all, I have a (hopefully quick) question. I've got a fascinating set of fitted surfaces in three dimensions corresponding to local linear multiple regressions. I'd like to add rugs to the X and Y axes (corresponding to my independent variables) in order to get a sense for

Re: [R] Add missing values/timestamps

2009-04-02 Thread Uwe Ligges
j.k wrote: Hello alltogheter, I have the following problem and maybe someone can help me with it. I have a list of values with times. They look like that: V1 V2 1 2008-10-14 08:45:00 94411.08 2 2008-10-14 08:50:00 90745.45 3 2008-10-14 08:55:00

Re: [R] Environments

2009-04-02 Thread Hans-Peter Suter
rename(x,C,Z) x - rename(x,C,Z) x A B Z D 1 2 3 4 -- Regards, Hans-Peter __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] Retrieving the context

2009-04-02 Thread Uwe Ligges
Example: see_context - function(word, data, context) { dat - data$strings temp - grep(paste(^, word, $, sep=), dat) if(length(temp)) index - lapply(temp, function(x) seq(max(0, x - context), min(x + context, length(dat sapply(index, function(x) paste(dat[x],

[R] [tcl] unknown color name red errors

2009-04-02 Thread Ken-JP
I am running on 64-bit Ubuntu, R version 2.8.1 If I do anything Tcl/Tk related like: library( Rcmdr ) or available.packages() I get the error: Error in structure(.External(dotTclObjv, objv, PACKAGE=tcltk), class = tclObj) : [tcl] unknown color name red

Re: [R] Add missing values/timestamps

2009-04-02 Thread Gabor Grothendieck
Try this where we read in a zoo series and then merge it with a zero width regularly spaced series to create the result. Lines - V1,V2 2008-10-14 08:45:00,94411.08 2008-10-14 08:50:00,90745.45 2008-10-14 08:55:00,82963.35 2008-10-14 09:00:00,75684.38 2008-10-14 09:05:00,78931.82 2008-10-14

Re: [R] How to specify axis interval unit...

2009-04-02 Thread V Prasanth
Dear R Users: Greetings! Finally, I got what I required...! Thanks a lot for all of your valuable support, especially to Jim and Duncan Murdoch. Great help guys... By the way, herewith I am furnishing the code that I used for adjusting the axis interval unit... Hope it will be useful to others,

Re: [R] Environments

2009-04-02 Thread Bill.Venables
What you are trying to do is make R behave like a macro language, which is not a good idea at all. Better to use R as it was designed to be used rather than make it behave like something it wasn't. It also follows that trying to do this is going to be tricky. Here is one way: RENAME -

Re: [R] CORRECTION: Re: Multicollinearity with brglm?

2009-04-02 Thread woodbomb
Ioannis, Here's an illustrative example. Note that: glm also objects to X4; X1,..,X4 are defined as factors. I've looked (albeit in a crude way) at various examples using the perturb package and it seems to confirm that X4 is the source of multicollinearity. As I say, I think the constant

Re: [R] A query about na.omit

2009-04-02 Thread Jose Iparraguirre D'Elia
Mark, Ted, Gabor, Thanks for all your input. José -Original Message- From: Gabor Grothendieck [mailto:ggrothendi...@gmail.com] Sent: 01 April 2009 18:12 To: Jose Iparraguirre D'Elia Cc: r-help@r-project.org Subject: Re: [R] A query about na.omit First input the data frame: Lines - x

[R] matrix vectorization or something else??

2009-04-02 Thread Kutlwano Ramaboa
Hello This may have been answered elsewhere, and I have looked on the web, but nothing helps. I am trying to do the following: X-matrix(c(1:15),nrow=3,byrow=T) Y-matrix(c(2,4,6,8,10),ncol=1) I need to sum the product of each row of X by the remaining j rows multiplied by j y values (i.e

Re: [R] Plotting multiple ablines

2009-04-02 Thread r...@quantide.com
May be: plot(c(-1, 1) , c(-1, 1), type = n) n = 4 a = rep(0, n) b = 1:n/n fun = function(i, a, b, col = 1 , ...) { abline(a[i], b[i], col = col[i], ...) } lapply(1:n, fun, a=a, b=b, col = 1:n) Andrea Thomas Levine wrote: I really want to do this: abline( a=tan(-kT*pi/180),

Re: [R] Programming objects in R

2009-04-02 Thread Tom Backer Johnsen
This is interesting. The fact that there are so few texts on the subject probably means that very few are using OO programming methods in R. I will probably look in the Python direction. Pity. I would have preferred R. Tom krzysztof.sakre...@gmail.com wrote: I have been using Chambers

[R] Calculating Modal value and huge dataset

2009-04-02 Thread Rainer M Krug
I have a data.frame y as below, and I want to calculate the weighted modal value, where v... are the values, and w... are the weights. At tha moment I am doing it as shown below, but my data.frame has 165900 and more rows, and it takes ages to do the calculations. I am sure there is a much better

Re: [R] Programming objects in R

2009-04-02 Thread Wacek Kusnierczyk
Tom Backer Johnsen wrote: This is interesting. The fact that there are so few texts on the subject probably means that very few are using OO programming methods in R. I will probably look in the Python direction. Pity. I would have preferred R. if you insist on oo, python might be a

Re: [R] Programming objects in R

2009-04-02 Thread Martin Morgan
Tom Backer Johnsen bac...@psych.uib.no writes: This is interesting. The fact that there are so few texts on the subject probably means that very few are using OO programming methods in R. Using python is great; your deduction about use of OO in R harder to support. The Bioconductor project

Re: [R] Programming objects in R

2009-04-02 Thread Tom Backer Johnsen
Wacek Kusnierczyk wrote: Tom Backer Johnsen wrote: This is interesting. The fact that there are so few texts on the subject probably means that very few are using OO programming methods in R. I will probably look in the Python direction. Pity. I would have preferred R. if you insist on

Re: [R] SNOW: Error in socketSelect(socklist) : not a socket connection

2009-04-02 Thread luke
Your R version seems to be out of date. This would happen in older versions of R, prior to 2.8.0 I believe, due to a bug in socketSelect that was fixed last August. luke On Wed, 1 Apr 2009, Ubuntu Diego wrote: I'm trying to use snow in my dual-core (hopefully later this is going to run in a

Re: [R] Programming objects in R

2009-04-02 Thread Krzysztof Sakrejda-Leavitt
Tom Backer Johnsen wrote: This is interesting. The fact that there are so few texts on the subject probably means that very few are using OO programming methods in R. That's overstating the problem. I frequently run into OO R packages and many of them are very nicely done. Some good

Re: [R] Programming objects in R

2009-04-02 Thread James W. MacDonald
While not wholly directed towards OO programming, 'R Programming for Bioinformatics' does cover both the S3 and S4 systems (and how to make them play nicely together) at an accessible level. http://www.bioconductor.org/pub/RBioinf/ Best, Jim Krzysztof Sakrejda-Leavitt wrote: Tom Backer

Re: [R] help with ggplot2 -- ggpoint function missing?

2009-04-02 Thread Felipe Carrillo
Did you load the package after installing it? install.packages(ggplot2) library(ggplot2) Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish Wildlife Service California, USA --- On Wed, 4/1/09, haettulegur haettule...@gmail.com wrote: From:

Re: [R] Constrined dependent optimization.

2009-04-02 Thread rkevinburton
Sorry I sent a description of the function I was trying to minimize but I must not have sent it to this group (and you). Hopefully with this clearer description of my problem you might have some suggestions. It is basically a warehouse placement problem. You have a warehouse that has many

Re: [R] CORRECTION: Re: Multicollinearity with brglm?

2009-04-02 Thread Ioannis Kosmidis
Thanks for your mail. I guess that the constant row sum on X would create problems in a simulation framework because you might end up with linearly dependent columns or even with columns of zeros (which I believe do not make much sense). First of all, I think there is a problem with your

[R] USING MULTILEVEL PACKAGE AND WABA FUNCTION

2009-04-02 Thread Analisi Dati
Dear friends, this time I have a problem with using waba function. Firstly, I'll explain you my situation. In the survey a gruop of supervisors judge the dipendents of a company. One supervisor reported on more than one subordinate. Thus, I need to show that lack of independence is not a

[R] Installation of all packages under Unix

2009-04-02 Thread nboehme
Dear List-Members, does anyone know a simple way to automatically install all R packages on a unix system to the default library path? Not from inside R, it should rather work as a shell script - job at startup. Something like R cmd install -l pkgs ### where pkgs should mean all packages

[R] all subsets for glm

2009-04-02 Thread Harald von Waldow
Dear R-users, For the purpose of model selection I am looking for a way to exhaustively (and efficiently) search for best subsets of predictor variables for a logistic regression model. I am looking for something like leaps() but that works with glm. Any feedback highly appreciated. -- Harald

[R] Selecting all rows of factors which have at least one positive value?

2009-04-02 Thread Stephan Lindner
Dear all, I'm trying to select from a dataframe all rows which correspond to a factor (the id variable) for which there exists at least one positive value of a certain variable. As an example: x - data.frame(matrix(c(rep(11,4),rep(12,3),rep(13,3),rep(0,3),1,rep(0,4),rep(1,2)),ncol=2)) x

[R] [R} seasonal differencing

2009-04-02 Thread Joseph Magagnoli
Hi all, I was wondering how to construct a seasonal differenced time series variable. I used the following code to construct a 12 span seasonal difference seasonal-diff(V2, lag=12, differences=1) is this correct? thank you in advance joe [[alternative HTML version deleted]]

Re: [R] Constrined dependent optimization.

2009-04-02 Thread Florin Maican
I tried many optimizers in R on my large scale optimization problems. I am not satisfied with their speed on large op problems. But you may try in this order nlminb ucminfucminf package spq BB package optim Is here someone that try to port Ipopt in R?

Re: [R] Selecting all rows of factors which have at least one positive value?

2009-04-02 Thread Nutter, Benjamin
x - data.frame(matrix(c(rep(11,4),rep(12,3),rep(13,3),rep(0,3),1,rep(0,4),re p(1,2)),ncol=2)) id.keep - unique(subset(x,X20)$X1) x2 - subset(x,X1 %in% id.keep) x2 -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Stephan Lindner

Re: [R] Constrined dependent optimization.

2009-04-02 Thread Ben Bolker
Just a quick thought: if you have the locations of the items along a line segment (the warehouse), can you find a way to formulate the problem so that the average distances represent a matrix calculation (i.e., multiply some huge matrix by the locations) then it's a linear problem ... It's

Re: [R] Constrined dependent optimization.

2009-04-02 Thread Ravi Varadhan
Florin, Please allow me to clarify some issues: Many, if not most, problems in science involve optimization in one form or another. Consequently, optimization is a vast area. There are many different types of optimization. Here is a one way to classify optimzation problems (neither mutually

Re: [R] Matrix multiplication - code problem

2009-04-02 Thread MarcioRibeiro
Hi again, I understood what you guys explained... But, there isn't a way to do a multiplication of matrix with a FOR command or otherelse where one o my dimension is ONE... Well, as my data file is small, I did the procedure at the excel... But, this is not the good procedure... Thanks, Marcio

Re: [R] Constrined dependent optimization.

2009-04-02 Thread Paul Smith
On Thu, Apr 2, 2009 at 3:49 PM, rkevinbur...@charter.net wrote: Sorry I sent a description of the function I was trying to minimize but I must not have sent it to this group (and you). Hopefully with this clearer description of my problem you might have some suggestions. It is basically a

Re: [R] Lattice axis list (when relation = free)

2009-04-02 Thread Deepayan Sarkar
On 3/29/09, In Hee Park ip...@chemistry.ohio-state.edu wrote: Dear R users: I am having difficulty to place x-axis location alternatively top/bottom side in Lattice plot, which is composed of seven-column as following: E1 E2 E3 E4 E5 E6 E7

Re: [R] all subsets for glm

2009-04-02 Thread Dieter Menne
Harald von Waldow wrote: For the purpose of model selection I am looking for a way to exhaustively (and efficiently) search for best subsets of predictor variables for a logistic regression model. Of all the dangerous ways of doing this and getting confusing results, gl1ce in lasso2

[R] finding best fitting model

2009-04-02 Thread Benedikt Niesterok
Hello, Is there a function in r to find the best fitting model for a set of data? I would like to know if my data are related exponentially,linearly or if there is a logarithmic correlation between my x and y values. To get a better imagination I've added the graphics at the end of this mail as

Re: [R] Function?

2009-04-02 Thread Jim Silverton
Hello all, I am looking at the one program of the marketing textbook. I understand what the following function is doing especially the .C command Can someone help? If I take off the .C comand will it still run?? drawwc = function(w, mu, y, sigi) { .C(draww, w = as.double(w),

Re: [R] Selecting all rows of factors which have at least one positive value?

2009-04-02 Thread Patrizio Frederic
or the exactly equivalent form: x[x$X1 %in% unique(x[x$X20,X1]), ] Patrizio 2009/4/2 Nutter, Benjamin nutt...@ccf.org: x - data.frame(matrix(c(rep(11,4),rep(12,3),rep(13,3),rep(0,3),1,rep(0,4),re p(1,2)),ncol=2)) id.keep - unique(subset(x,X20)$X1) x2 - subset(x,X1 %in% id.keep) x2

Re: [R] help with ggplot2 -- ggpoint function missing?

2009-04-02 Thread Edwin Chen
Thanks, that helped! I didn't realize there was another version of the book. On Wed, Apr 1, 2009 at 2:51 PM, Tobias Verbeke tobias.verb...@openanalytics.be wrote: Hi, I'm trying to follow the ggplot introduction here: http://had.co.nz/ggplot/ggplot-introduction.pdf I've installed ggplot2

Re: [R] help with ggplot2 -- ggpoint function missing?

2009-04-02 Thread Steve_Friedman
I tried the example in ggplot as well and rec'd the same error message. ggpoint is not found in the ggplot2 library. Steve Friedman Ph. D. Spatial Statistical Analyst Everglades and Dry Tortugas National Park 950 N Krome Ave (3rd Floor) Homestead, Florida 33034 steve_fried...@nps.gov Office

[R] problem with svyglm()

2009-04-02 Thread Federico Calboli
Hello, I'm trying to use the function svyglm in the library survey. I create a data survey object: data_svy- svydesign(id=~PSU, strata=~sample_domain, weights=~sample_weight, data=data, nest=TRUE) and I try to use svyglm() with little success:

Re: [R] Lattice axis list (when relation = free)

2009-04-02 Thread In Hee Park
Thanks for your comment. Beside axis location, I have another question for you. If I wanted to change the matrix column names shown on the lattice plot, which argument should be used to handle it? (I'd like to know the overall lattice plot level scheme, for example, which argument controls

[R] help with two layers of factors

2009-04-02 Thread haettulegur
I have a data frame that looks something like... Column 1 is an experiment_id, Column 2 is the type of treatment (control, full treatment, or partial treatment), and Column 3 is a value. Experiment_id Treament_type Value 12345control3 12345full treatment4 12345full treatment

Re: [R] Lattice axis list (when relation = free)

2009-04-02 Thread Deepayan Sarkar
On 4/2/09, In Hee Park ip...@chemistry.ohio-state.edu wrote: Thanks for your comment. Beside axis location, I have another question for you. If I wanted to change the matrix column names shown on the lattice plot, which argument should be used to handle it? (I'd like to know the

[R] multiple annotations on a heatmap

2009-04-02 Thread Levi Waldron
Can someone recommend a more sophisticated way to annotate heatmaps than the ColSideColors argument of heatmap and heatmap.2? In particular, I would like to be able to annotate columns with more than one piece of information, like in Figure 1 of the article at

Re: [R] Matrix multiplication - code problem

2009-04-02 Thread Patrick Burns
You need to put in calls to 'as.matrix'. It's a bit tricky though -- what you want depends on whether it is the first or second subscript that has length 1. as.matrix(id_y[,,i]) if the second dimension has length 1. t(as.matrix(id_y[,,i])) if the first dimension has length 1. Patrick Burns

Re: [R] Function?

2009-04-02 Thread Patrick Burns
Would your blood still circulate if you take off your heart? That is, the answer is, No, that's where the work is done in the function. If you want to understand the computations that function is doing, then you need to examine the C code that it is calling. Patrick Burns

Re: [R] Matrix multiplication - code problem

2009-04-02 Thread Ben Bolker
I think this works in general, although it's a little bit clunky: id_y - array(1:10,dim=c(2,1,5)) id_yt - aperm(id_y,c(2,1,3)) m_id - array(dim=c(dim(id_y)[1],dim(id_y)[1],dim(id_y)[3])) for (i in 1:dim(id_y)[3]){ m1 - array(id_y[,,i],dim=dim(id_y)[1:2]) m2 -

Re: [R] [R-sig-Geo] Time series analysis with irregular time-series

2009-04-02 Thread Ben Fissel
Hello Wesely, The appropriate way to address irregular time series depends on what want to use the estimates for. If your objective is to estimate the times that you don't observe (interpolate) then a natural cubic spline is a good method to provide such an estimate. If your objective is to

Re: [R] Constrined dependent optimization.

2009-04-02 Thread Florin Maican
Ravi, You are right. I did not specified the type of problem: large problems with smooth functions and not large-scale discrete problems. I am sorry for confusion. For non-smooth functions, I can suggest subplex. http://cran.r-project.org/web/packages/subplex/index.html Florin On Thu, 2

Re: [R] A question about forecasting with R

2009-04-02 Thread Rolf Turner
On 2/04/2009, at 11:27 PM, Uwe Ligges wrote: snip Not many of us are clairvoyants snip Hey! Wish I'd said that! :-) cheers, Rolf P. S. Great minds think alike. R.

[R] Sweave, using xtable in a loop doesnt work?

2009-04-02 Thread Stacey Burrows
I have a data.frame, data, with 30 factor variables. I would like to tabulate the frequencies of each variable and output to a tex file using Sweave. Here is my code chunk: label=tab, echo=FALSE, results=tex= library(xtable) for(j in 1:30){   cap - paste(Frequency counts for Q,j,., sep=)  

[R] Looking for an R advanced programming course in USA

2009-04-02 Thread steve Jones
Hi List, I am looking for an R advanced programming course in USA for April. Need to attend the course before April 31st. Regards - Steve [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

Re: [R] Sweave, using xtable in a loop doesnt work?

2009-04-02 Thread Paul Hiemstra
Stacey Burrows schreef: I have a data.frame, data, with 30 factor variables. I would like to tabulate the frequencies of each variable and output to a tex file using Sweave. Here is my code chunk: label=tab, echo=FALSE, results=tex= library(xtable) for(j in 1:30){ cap - paste(Frequency

Re: [R] Installation of all packages under Unix

2009-04-02 Thread Paul Hiemstra
nboe...@uni-potsdam.de schreef: Dear List-Members, does anyone know a simple way to automatically install all R packages on a unix system to the default library path? Not from inside R, it should rather work as a shell script - job at startup. Something like R cmd install -l pkgs ### where

[R] Deleting rows based on identity variable

2009-04-02 Thread gina patel
I have created this data frame to help illustrate my problem. id-c(rep(1,5),rep(2,5),rep(3,5),rep(4,5),rep(5,5)) x-rep((seq(1:5)),5) y-c(0, 0.1, 0.5, 0.4, 0.2, 0, 0.1, 0.5, 0.4, 0.12, 0, 0.1, 0.5, 0.55, 0.2, 0, 0.1, 0.5, 0.3, 0.2, 0, 0.1, 0.6, 0.4, 0.1) d1-cbind(id,x,y) I would like to delete

[R] In plot.zoo the screens and ylim arguments seem incompatible

2009-04-02 Thread Scott Tennican
I am plotting multiple graphs per window with multiple series on each graph. When I try to set ylim I get the error below: Error in ylim[[idx]] : subscript out of bounds Am I incorrectly specifying my ylim list or is this a bug? Here is a simple reproduction: z - zoo(cbind(a = 1:10, b = 11:20,

Re: [R] Deleting rows based on identity variable

2009-04-02 Thread Rowe, Brian Lee Yung (Portfolio Analytics)
Is this what you want: d1[which(id != 4),] id xy [1,] 1 1 0.00 [2,] 1 2 0.10 [3,] 1 3 0.50 [4,] 1 4 0.40 [5,] 1 5 0.20 [6,] 2 1 0.00 [7,] 2 2 0.10 [8,] 2 3 0.50 [9,] 2 4 0.40 [10,] 2 5 0.12 [11,] 3 1 0.00 [12,] 3 2 0.10 [13,] 3 3 0.50 [14,] 3 4 0.55 [15,] 3 5

Re: [R] Deleting rows based on identity variable

2009-04-02 Thread hadley wickham
On Thu, Apr 2, 2009 at 3:37 PM, Rowe, Brian Lee Yung (Portfolio Analytics) b_r...@ml.com wrote: Is this what you want: d1[which(id != 4),] Or just d1[id != 4, ] Hadley -- http://had.co.nz/ __ R-help@r-project.org mailing list

Re: [R] Installation of all packages under Unix

2009-04-02 Thread Bernardo Rangel Tura
On Thu, 2009-04-02 at 14:37 +0200, nboe...@uni-potsdam.de wrote: Dear List-Members, does anyone know a simple way to automatically install all R packages on a unix system to the default library path? Not from inside R, it should rather work as a shell script - job at startup.

Re: [R] Deleting rows based on identity variable

2009-04-02 Thread gina patel
I have another question, if I now want to remove multiple id's e.g. id=1 or 4 is there a simple OR command I can use? I tried  d2-(d1[id != 1 | 4, ]) however this does not delete anything PS  d2-(d1[id != 4, ]) worked to remove id=4 Thanks Gina --- On Thu, 4/2/09, hadley wickham

Re: [R] Deleting rows based on identity variable

2009-04-02 Thread Rolf Turner
On 3/04/2009, at 9:30 AM, gina patel wrote: I have created this data frame to help illustrate my problem. id-c(rep(1,5),rep(2,5),rep(3,5),rep(4,5),rep(5,5)) x-rep((seq(1:5)),5) y-c(0, 0.1, 0.5, 0.4, 0.2, 0, 0.1, 0.5, 0.4, 0.12, 0, 0.1, 0.5, 0.55, 0.2, 0, 0.1, 0.5, 0.3, 0.2, 0, 0.1, 0.6,

Re: [R] Deleting rows based on identity variable

2009-04-02 Thread Nordlund, Dan (DSHS/RDA)
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of gina patel Sent: Thursday, April 02, 2009 2:17 PM To: Brian Lee Yung (Portfolio Analytics)Rowe; hadley wickham Cc: R-help@r-project.org Subject: Re: [R] Deleting rows based on

Re: [R] Deleting rows based on identity variable

2009-04-02 Thread baptiste auguie
just for curiosity, `%ni%` - Negate(`%in%`) 1 %ni% c(2,1) [1] FALSE d1[id %ni% c(1,4), ] baptiste On 2 Apr 2009, at 22:17, gina patel wrote: I have another question, if I now want to remove multiple id's e.g. id=1 or 4 is there a simple OR command I can use? I tried d2-(d1[id != 1 |

[R] calculating drop1 R^2s

2009-04-02 Thread Michael Friendly
This is probably simple, but I just can't see it... I want to calculate the R^2s for a series of linear models where each term is dropped in turn. I can get the RSS from drop1(), and the r.squared from summary() for a given model, but don't know how to use the result of drop1() to get the

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