On Thu, 13-Aug-2009 at 04:24PM -0600, Mark Na wrote:
| Hello,
|
| My dataframe has new columns that start with the number 1 or 2 (resulting
| from a reshape cast command).
|
| Instead of having these columns automatically renamed by R so start with the
| letter X, I would like to rename these
This is to announce that we plan to release R version 2.9.2 on Monday,
August 24, 2009.
Release procedures start Friday, August 14.
Those directly involved should review the generic schedule at
http://developer.r-project.org/release-checklist.html
The source tarballs will be made available
Hi,
I would like to use a random Forest model to get an idea about which variables
from a dataset may have some prognostic significance in a smallish study. The
default for the number of trees seems to be 500. I tried changing the default
to ntree=2000 or ntree=200 and the results appear
Does anybody know if it's possible to have R send an email or execute an
additional line of code in case an error is generated from a running script?
I am running R on a cluster and would like to have it kill the job if R
generates an error, but as it is, the job just keeps running until the
Hello,
I want call my function (use my database) and write every result in matrix
wynik but I always get an error: Error in wynik[, i] - dodawanie(wzorzec,
wzorzec1) :
number of items to replace is not a multiple of replacement length
I'll be very happy if sb help me
dodawanie- function (
PJ == Pitt, Joel pi...@georgian.edu
on Thu, 13 Aug 2009 18:40:49 -0400 writes:
As I said in my original email, I'm sure that many of
you will doubt the wisdom of what I'm trying to do --
and I certainly share some of your misgivings. I have
misgivings too about the use
Moshe Olshansky wrote:
Is your system of equations linear?
dear sir,
Yes, the system is linear. It can have this form:
a x + b y + c z = d
e x + f y + g z = h
But it can be more complex. I would like to calculate in R the solutions
under the form of equation of x,y and z.
Any idea?
On Thu, 13-Aug-2009 at 05:48PM -0700, caltechneurostudy wrote:
|
| Does anybody know if it's possible to have R send an email or execute an
| additional line of code in case an error is generated from a running script?
| I am running R on a cluster and would like to have it kill the job if R
|
I use the function multinom to estimate a multiple logistic regression.
but I need one coefficient as generic. How can I do this? Or is it
possible to do this with an another function?
As example this is what I get:
Call:
multinom(formula = choice ~ time + costs, data = DATA)
Dear all,
Can anyone please explain this apparent problem with using pdIdent in
lme within a new function?
library(nlme)
y-rnorm(30)
K-matrix(rnorm(900),30,30)
df1-data.frame(y=y,K=K,g=1)
df1$g-as.factor(df1$g)
lme(fixed=y~1,random=list(g=pdIdent(~K-1)),data=df1,na.action=na.omit)
#Works
It looks like a sound solution.
Thanks Vitalie.
Vitalie S. wrote:
Hi,
RG Hi,
RG I'm wondering if the following behaviour is normal:
RG setClass('A', representation(number='numeric'), RG
validity=function(object){ RG if( obj...@number -1 )
return(Invalid number);
Hi every one,
how to get frequency distributions for one variable across other variable.
ex: var1=age, var2=height i need frequency distribution of age across
height.
Thanks in Advance.
--
View this message in context:
Thanks! Now it works.
Roman
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View this message in context:
http://www.nabble.com/metaplot-in-rmeta%3A-y-axis-disappears-tp24917401p24968707.html
Sent from the R help mailing list archive at Nabble.com.
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Hi
I have been using RGoogleDocs successfully for some time now but something
seems to have happened which is preventing me from accessing my data in google
spreadsheets.
I get the message: problems connecting to get the list of documents when I
use getDocs, despite being logged in
e.g.
On Thu, Aug 13, 2009 at 11:11 PM, Mary Puttmp...@mail.med.upenn.edu wrote:
Hi Mary,
I would like to use a random Forest model to get an idea about which
variables from a dataset may have some prognostic significance in a smallish
study. The default for the number of trees seems to be 500. I
Hi,
I have optimized the shrinkage parameter (GCV)for ridge and got my r2
value is 70% . to check the sensitivity of the result, I did permutation
test. I permuted the response vector and run for 1000 times and draw a
distribution. But now, I get r2 values highest 98% and some of them more
Graves, Gregory wrote:
I have a set of 52 weekly values, one is the desired high lake stage for
a week, and the other is the desired low lake stage for each week. It
looks like this:
...
I can plot out two nice curves using the following code, but I can't
figure out how to shade in the area
It is quite obvious why you get the error message; check your data:
Error in wynik[, i] - dodawanie(wzorzec, wzorzec1) :
number of items to replace is not a multiple of replacement length
No suitable frames for recover()
i
[1] 1
dodawanie(wzorzec, wzorzec1)
[1] 3 5 4 2 6 3
str(wynik)
num
On Fri, Aug 14, 2009 at 1:43 PM, Mary Puttmp...@mail.med.upenn.edu wrote:
I'm not calling it a problem that the answer converges--i.e. that the
algorithm is stable. but if you look at the example even though I've asked
for 2000 or 200 tress, ntree=2000 or ntree=200, it still gives me 500
Hi List,
I used to access a Paradox database using RODBC, but since last week I
am not able anymore to fetch any table which has a name longer than 11
or 12 characters.
Here is the the pattern of my code, nothing spectacular:
library(RODBC)
channel2-odbcDriverConnect('DSN=xxx')
#table names
It is working for me. Are you using the latest version as in Version: 0.2-2?
Blackett, Matthew wrote:
Hi
I have been using RGoogleDocs successfully for some time now but something
seems to have happened which is preventing me from accessing my data in
google spreadsheets.
I get the
I will attempt to distill my problem down to a simpler one, the solution of
which will hopefully lead me to the nirvana of complete understanding, i.e.,
inserting a polygon beneath an irregular line terminated by the x axis.
I 'know' that polygon will work -provided- I knew the xy coordinates
Thanks for bringing me to, arr[R] Inferno Patrick,
But I don't see how that solves my problem since
I am not using a loop or any control structure but
a construct of commands that follow each other.
If all fails I might end up rewriting everything into
a loop but right now I would hope for a
Graves, Gregory wrote:
I will attempt to distill my problem down to a simpler one, the solution of
which will hopefully lead me to the nirvana of complete understanding, i.e.,
inserting a polygon beneath an irregular line terminated by the x axis.
I 'know' that polygon will work -provided- I
-Original Message-
From: r-help-boun...@r-project.org
[mailto:r-help-boun...@r-project.org] On Behalf Of Alex Roy
Sent: Freitag, 14. August 2009 12:05
To: r-help@r-project.org
Subject: [R] Permutation test and R2 problem
Hi,
I have optimized the shrinkage parameter
Thanks again for your reply, Thierry.
Packing several functions into another function
would again seem to create a nested structure
(only slightly smaller).
The simplest solution would be to use [R]'s parsing
or evaluation commands to skip to the next line
once a certain function returns an
If you really want to skip to the next line on an error without
checking, then wrap each line in 'try', or put blocks in a try:
try(...expr...)
try(...expr...)
try({
expr...
expr
expr
})
On Fri, Aug 14, 2009 at 8:51 AM, Nir Shachafnirshac...@gmail.com wrote:
Hi!
I am quiet new with R and I have some problems to perform a posthoc test
with an lme model.
My model is the following:
lme1-lme(eexp~meal+time, random=~1|id,na.action=na.omit)
and then i try to get a post hoc test:
summary(glht(lme1,linfct=mcp(meal=Tukey)))
but I get a warning message:
Thanks, the pointer to the tokenizer helped.
Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine
15032 Hunter Court, Westfield, IN 46074
(317) 490-5129 Work, Mobile VoiceMail
The real
On 8/14/2009 10:06 AM, Casimir wrote:
Hi!
I am quiet new with R and I have some problems to perform a posthoc test
with an lme model.
My model is the following:
lme1-lme(eexp~meal+time, random=~1|id,na.action=na.omit)
and then i try to get a post hoc test:
Hi Matthew
You mentioned in mail direclty to me that this code worked
earlier in your morning. So that suggests that it is not
the code. But you should look carefully at the 2 lines
you ran (i.e. the ones below) and painstakingly check
that the user name and password are the same. It is
easy to
Windows XP
R 2.8.1
Is there any way to make a list of the from
1,1,1,2,2,2,3,3,3,4,4,4, . . ., n,n,n?
Thanks
John
John David Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology
Baltimore VA Medical Center
10 North Greene
Hi,
On Aug 14, 2009, at 10:44 AM, John Sorkin wrote:
Windows XP
R 2.8.1
Is there any way to make a list of the from
1,1,1,2,2,2,3,3,3,4,4,4, . . ., n,n,n?
Like so?
R rep(1:10, each=3)
[1] 1 1 1 2 2 2 3 3 3 4 4 4 5 5 5 6 6 6 7 7 7 8
8 8 9
[26] 9 9 10 10 10
rep(1:4, each=3)
[1] 1 1 1 2 2 2 3 3 3 4 4 4
On Fri, Aug 14, 2009 at 10:44 AM, John
Sorkinjsor...@grecc.umaryland.edu wrote:
Windows XP
R 2.8.1
Is there any way to make a list of the from
1,1,1,2,2,2,3,3,3,4,4,4, . . ., n,n,n?
Thanks
John
John David Sorkin M.D., Ph.D.
Chief,
John Sorkin wrote:
Windows XP
R 2.8.1
Is there any way to make a list of the from
1,1,1,2,2,2,3,3,3,4,4,4, . . ., n,n,n?
rep(1:n, each=3)
Greetings,
Christian
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https://stat.ethz.ch/mailman/listinfo/r-help
How I can create some sample data from a density in the form:
f(x)=sum(a(j)M(j)),
in which M(j) is the B-spline basis function. In fact my density
function is a linear combination of B-splines. (Is there any other way
than using the well-known and general uniform distribution method?)
--
Free
Hi there,
I'm having a problem when trying to create a large matrix (1,000,000 x
1,000,000) of the .csr type (package 'SparseM').
k - rep(0,100)
tmp - length(k)
tmp2 - as.matrix.csr(0,tmp,tmp)
Error in if (length(x) == nrow * ncol) x - matrix(x, nrow, ncol) else { :
missing value where
I have a geodatabase and would like to import it into GRASS, but it is
in .mbf. I use mac and linux, and don't have access to access on the
machines that I normally use. I do have access to access at school,
but I would like to find a way around this if possible. Any thoughts,
comments, or
How I can generate a random sample from a mixed norml distribution?
(i.e. a mixed normal distribution in the form f(x)=.6*N(1,5)+.4*N(2,3)
in which N(A,B) is a normal distribution with mean A and variance B.)
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On 8/14/2009 10:31 AM, mahdiyeh wrote:
How I can generate a random sample from a mixed norml distribution?
(i.e. a mixed normal distribution in the form f(x)=.6*N(1,5)+.4*N(2,3)
in which N(A,B) is a normal distribution with mean A and variance B.)
Set up the means and SDs as constant vectors:
Like this?
age-as.integer(sample(rnorm(100, mean=30, sd=10), replace=T))
height-as.integer(1+age*rnorm(100,mean=1,sd=0.2))
plot(age, height)
table(age,height)
or
freq=data.frame(table(age,height))
freq-subset(freq,Freq0)
freq
bests
milton
On Fri, Aug 14, 2009 at 5:02 AM, rajclinasia
On Aug 14, 2009, at 10:29 AM, stephen sefick wrote:
I have a geodatabase and would like to import it into GRASS, but it is
in .mbf. I use mac and linux, and don't have access to access on the
machines that I normally use. I do have access to access at school,
but I would like to find a way
Here is one way to do it:
mytime-c(12:00:00,12:00:05,12:15:05,12:15:06,12:20:00,12:30:01,12:45:01,13:00:00,13:15:02)
# you might want a date on your data
x - as.POSIXct(mytime, format=%H:%M:%S)
# create quarter hour intervals for the data range
quarter - seq(trunc(min(x), 'days'),
The R Hmisc package interfaces these tools - see its mdb.get function.
Frank
Marc Schwartz wrote:
On Aug 14, 2009, at 10:29 AM, stephen sefick wrote:
I have a geodatabase and would like to import it into GRASS, but it is
in .mbf. I use mac and linux, and don't have access to access on the
Frank,
I have tried to use this package, but because I am using fink to
install packages the mdbtools binary they are not accessible by the
function from within R. I checked this by just trying to call it with
the system function and R returned /bin/sh not found. I can access
the binary from the
The AT Access driver works reasonably well: it is described in the
current RODBC manual.
On Fri, 14 Aug 2009, Marc Schwartz wrote:
On Aug 14, 2009, at 10:29 AM, stephen sefick wrote:
I have a geodatabase and would like to import it into GRASS, but it is
in .mbf. I use mac and linux, and
You need a fundamental solution to your system problem but a quick fix
is to provide a symbolic link to the executable from a place that is in
your system path.
Frank
stephen sefick wrote:
Frank,
I have tried to use this package, but because I am using fink to
install packages the mdbtools
Try this also:
times - as.POSIXlt(mytime, format = %H:%M:%S)
subTimes - times[times[['min']] %in% c(0,15,30,45)]
format(subTimes[!duplicated(format(subTimes, %H:%M))], %H:%M:%S)
On Thu, Aug 13, 2009 at 5:10 PM, Tim Clark mudiver1...@yahoo.com wrote:
Dear List,
I have a data frame of data
Stephen -
You can modify your path on the fly with Sys.setenv:
Sys.setenv(PATH=paste(Sys.getenv('PATH'),'/sw/bin',sep=':'))
should make executables installed in /sw/bin available to R.
- Phil Spector
thank you all- I will report back when I have tried on my computer at home.
On Fri, Aug 14, 2009 at 12:24 PM, Phil Spectorspec...@stat.berkeley.edu wrote:
Stephen -
You can modify your path on the fly with Sys.setenv:
Sys.setenv(PATH=paste(Sys.getenv('PATH'),'/sw/bin',sep=':'))
should
Jim,
That works great! However, would you please explain what the '[' and the 1 do
in the sapply function? I understand that you are cutting x by quarter, then
creating a list of x that is split based on those cuts. I just don't
understand what [ means in this contex, or what the number one
Here is the solution for shading under a curve
attach(cars) #example dataset
scatter.smooth(speed, dist,family = gaussian,span = .3, xlim=c(3,25),
type='n') #plot a curve (smoothed line)
gg-loess.smooth(speed,dist,family = gaussian,span = .3) #put coordinates of
smoothed line into 'gg'
Dear R Users,
I have a data frame of 360 rows by 720 columns (259200 values). For each value
in this grid I am hoping to apply an equation to, to generate a new grid. One
of the parts of the equation (called 'p') relies on reading from a separate
reference table. This is Table 4 at:
Converting to times class we can use trunc.times to
truncate to 15 minutes and then use tapply to get the
indices, ix.
library(chron)
tc - times(mytime)
ix - tapply(seq_along(tc), trunc(tc, 00:15:00), head, 1)
tc[ix]
[1] 12:00:00 12:15:05 12:30:01 12:45:01 13:00:00 13:15:02
Note that times
sapply(mylist, '[', 1)
is equivalent to
sapply(mylist, function(x) x[1]) # select just the first element
[ is an function that is called with a object and an index. Using
it the way I did in the email was a shorthand way of doing it. Here
is an example:
x - list(1,2,3)
x[1]
[[1]]
[1] 1
Dear Deepayan,
First of all I'm sorry for resuming such an old thread, but I think I may
have found an easy fix.
Replacing in xyplot.formula (and similar internal functions for the
other Trellis plots)
foo$call - sys.call(sys.parent())
foo$call[[1]] - quote(xyplot)
with
foo$call
Dear All,
I am trying to iterate an iterative process (i know R is not the best place
for so much looping but i have to so tough!) and store the resulting data
from each iteration to then be graphed. In simple form the script looks like
this
for(i in tracks)
{
a -
You might want to look at 'findInterval'. This will give you back an
index based on the ranges you specify; e.g., the breaks in you table
that has the 'p' in it. Here is an example if your table had 100
values between -89.5 89.5 and was split evenly:
x - seq(-89.5, 89.5, length=50)
x
[1]
Hi again,
I found what I was doing wrong.
If you run:
k - rep(0,100)
tmp - length (k)
'tmp' now is an object of class 'integer'. I resolve the issue doing
tmp - as.numeric(length(k))
then the function
tmp2 - as.matrix.csr(0,tmp,tmp)
works properly
Thanks,
Jose
On Fri, Aug 14, 2009 at
This is just one suggestion for a solution, and I think there may be much
more elegant ones out there. However, this should work.
1. Reshape your data in long format
2. Merge the table that holds the values you want to multiply your data with
with your reshaped dataset (this may require
try something like this using 'list'
results.dataset - list()
for(i in tracks)
{
a - (subset(data, data$Id==i))
result.dataset[[i]] - function(a, other.arguements)
### this function is the other iterative process, but its in another script
and is imported in so dont
Thanks to you both for your responses.
3
I think these approaches will *nearly* do the trick, however, the problem is
that the reference/lookup table is based on 'bins' of latitude values, eg.61,
60-56, 55-51, 50-46 etc. whereas the actual data (in my 720 x 360 data frame)
are not binned, e.g.
Jim,
Got it! Thanks for the explanation and the example. Always nice to learn new
tricks on R.
Aloha,
Tim
Tim Clark
Department of Zoology
University of Hawaii
--- On Fri, 8/14/09, jim holtman jholt...@gmail.com wrote:
From: jim holtman jholt...@gmail.com
Subject: Re: [R] Finding
Thanks for everyones help and for the alternate ways of doing this. I am
always amazed at how many solutions this list comes up with for things I get
stuck on! It really helps us non-programmers learn R!
Aloha,
Tim
Tim Clark
Department of Zoology
University of Hawaii
--- On Fri, 8/14/09,
On Fri, Aug 14, 2009 at 11:04 AM, vincenzo.2.di-io...@gsk.com wrote:
Dear Deepayan,
First of all I'm sorry for resuming such an old thread, but I think I may
have found an easy fix.
Replacing in xyplot.formula (and similar internal functions for the other
Trellis plots)
foo$call -
Once you have the long format of the dataset, you could just code a bin
variable and merge with this bin variable instead. Piece o' cake, ain't it?
Daniel
-
cuncta stricte discussurus
-
-Ursprüngliche Nachricht-
Von:
Here is the solution for a shading between two curves. [much thanks to W.D.)
attach(cars)
#put 2 curves on the graph
scatter.smooth(speed, dist+25,family = gaussian,span =
.3,xlim=c(3,25),type='n',ylim=c(0,120))
par(new=T)
scatter.smooth(speed, dist-5,family = gaussian,span =
Kind of to second Steve's concerns, I would suggest that you change the names
of your functions slightly (put xx. in front of them or some other prefix).
I remember a friend telling of a unix administrator that aliased the rm command
to actually run rm -i (rm deletes files, the -i makes it ask
You could try setting options(error=function() NULL). This should cause R in
batch mode to continue running after an error (the same way it does in
interactive mode.)
-- Tony Plate
Nir Shachaf wrote:
Hi All,
I am running an Rscript with a bunch of algorithms that are UNSTABLE
under some
?solve
--
Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg.s...@imail.org
801.408.8111
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
project.org] On Behalf Of Moreno Mancosu
Sent: Friday, August 14, 2009 1:23 AM
I'm hoping that someone could guide me in how to extract data from shapefiles.
I want to extract data from a shapefile (classed as SpatialPolygonsDataFrame)
and more specifically, the data is contained within the slot called coords
from the class polygons within this file and despite my best
Thanks, for lwd. I could not find rgl 0.85. The latest one I saw was 0.84. Can
you tell me where I can download it from?
Also, is there a curve3d? I need to join two points in 3d smoothly.
Thanks ../Murli
-Original Message-
From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
Sent:
Windows XP
R2.8.1
I am running an balanced aov, in which Time has 4 levels, Group has 2
levels:
fit2-aov(Post ~ as.factor(Time)
+as.factor(Group)+as.factor(Group*Time)+Error(SS), alldata)
I would like to get a p value for each level of time, each level of
Group and each level of Group*Time. How
Dear Deepayan,
I see your point. I must admit that I was considering only formula's as x
argument for the trellis plots. What I would really like to have in your
example, would be
barchart.matrix - function (x, data = NULL, ...) {
foo - barchart(as.table(x), data, ...)
foo$call -
Hello friends,
in SAS there is the 'libname' source. You associate a way.. ex: ab .. C:\My
Paste\Works and when u do
data ab.example;
(...)
run;
you are saving the archive example in a SAS format, and you can see
C:\My Paste\Works\example growing (example's size:200MB... refresh..
500MB..
This is just one suggestion for a solution, and I think there may be much
more elegant ones out there. However, this should work.
1. Reshape your data in long format
2. Merge the table that holds the values you want to multiply your data with
with your reshaped dataset (this may require
How can I understand if a distribution is bimodal? The quantiles of
desired probablities and also cumulative probablities in desired data
points are provided.
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Hi listers,
I am working on a simulation... But I am having some troubles...
Suppose I have a function A which produces two results (mean and
variance)...
Then I would like to simulate this function A with a function B many times
using the results from function A
For example:
#Function A
Hi, R users,
Does anyone know whether there are any Discrete Choice Modeling modules
for R? Any books or websites discussing this?
Thanks
Harry
[[alternative HTML version deleted]]
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On Fri, Aug 14, 2009 at 9:11 PM, Kate
Zinszerkate.zins...@mail.mcgill.ca wrote:
I'm hoping that someone could guide me in how to extract data from
shapefiles. I want to extract data from a shapefile (classed as
SpatialPolygonsDataFrame) and more specifically, the data is contained
within
library(Hmisc)
# Read all tables in the Microsoft Access database blabla.mdb
# perhaps better change to Locale in which the .mdb file was
# generated to avoid that accented table column names are
# getting lost.file first
Sys.setenv(PATH=paste(Sys.getenv('PATH'),'/sw/bin',sep=':'))
d
I know I am going to catch alot of comments for this question but I am really
stuck. If there is some written documentation that I have missed please
redirect me.
I want to build 'R' from source on a Windows Platform. The main reasons are
that I want to check out a debugging some existing
Hi Stephen,
I have read .mdb files using RODBC package.
Try give a look on it.
bests
milton
On Fri, Aug 14, 2009 at 7:55 PM, stephen sefick ssef...@gmail.com wrote:
library(Hmisc)
# Read all tables in the Microsoft Access database blabla.mdb
# perhaps better change to Locale in
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