Re: [R] read SAS dataset using read.ssd()

2010-08-03 Thread Peter Dalgaard
array chip wrote: Looks like the log file is not appropriately attached. Here it is again. Thanks for any suggestions. John Well, SAS isn't finding the file test in the SAS library .\Desktop, presumably because it has the wrong extension. The obvious question is whether you can read

Re: [R] Confidence Bands in nonlinear regression using optim and maximum likelihood

2010-08-03 Thread Peter Dalgaard
Cristian Montes wrote: Hello, I am trying to plot confidence bands on the mean and prediction bands for the following nonlinear regression, using maximum likelihood via optim. A toy example with data and code of what I am trying to accomplish is: VOL-c(0.01591475, 1.19147935

Re: [R] read SAS dataset using read.ssd()

2010-08-03 Thread Nordlund, Dan (DSHS/RDA)
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r- project.org] On Behalf Of Peter Dalgaard Sent: Monday, August 02, 2010 11:30 PM To: array chip Cc: r-help@r-project.org Subject: Re: [R] read SAS dataset using read.ssd() array chip wrote: Looks

[R] hi!!! guestion!!

2010-08-03 Thread leepama
I made some matlab codes... Is there any method to perform matlab codes in R program?? -- View this message in context: http://r.789695.n4.nabble.com/hi-guestion-tp2311219p2311219.html Sent from the R help mailing list archive at Nabble.com. __

Re: [R] sorting by date

2010-08-03 Thread Joshua Wiley
Then just use order() for instance, mydata - read.table(textConnection( 20071130 information info 20071031 information info)) closeAllConnections() mydata[order(strptime(mydata$V1, format = %Y%m%d)), ] HTH, Josh On Mon, Aug 2, 2010 at 7:07 PM, Leigh E. Lommen

Re: [R] sorting by date

2010-08-03 Thread stephen sefick
sort_df in package reshape? On Mon, Aug 2, 2010 at 9:07 PM, Leigh E. Lommen leigh.lom...@courtesycorporation.com wrote: a - c( 20071031,20071130, 20071231) sort(a) Or if you want convert to date: sort(strptime(a, '%Y%m%d')) Okay, but what if you have information in the other columns?

Re: [R] reading dates in Excel into R

2010-08-03 Thread 500600
I sometimes had trouble importing data that was exported from Excel. Exporting through OpenOffice sometimes resolved the issue. -- View this message in context: http://r.789695.n4.nabble.com/reading-dates-in-Excel-into-R-tp2306830p2311374.html Sent from the R help mailing list archive at

Re: [R] R2 function from PLS to use a model on test data

2010-08-03 Thread Bjørn-Helge Mevik
Addi Wei addi...@gmail.com writes: Hello, I am having some trouble using a model I created from plsr (of train) to analyze each invididual R^2 of the 10 components against the test data. For example: mice1 - plsr(response ~factors, ncomp=10 data=MiceTrain) R2(mice1)##this

Re: [R] adding FORTRAN code to a package

2010-08-03 Thread Uwe Ligges
I assume you will need .Fortran(cov1, .., PACKAGE=RcmdrPlugin.push) if the fortran code is in your package. Best, Uwe Ligges On 03.08.2010 05:54, Erin Hodgess wrote: Dear R People: Hello! I'm putting together another RcmdrPlugin package and need to add a FORTRAN subroutine to speed

[R] how to do randomly sampling in raster layer

2010-08-03 Thread Mao Jianfeng
Dear r-helpers, I want to randomly sample n points from regions of a raster layers, the cells denoted as NA is not included in this sampling process. And, I want to got the longitude and latitude of the sampled points. I checked the manual of raster package, I found several functions is relative

Re: [R] remove extreme values or winsorize – loop - dataframe

2010-08-03 Thread Liviu Andronic
On Tue, 3 Aug 2010 10:00:08 +1000 Glen Barnett glnbr...@gmail.com wrote: This might help some: RSiteSearch(winsorize) Or require(sos) findFn(winsorize) Liviu __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] grep with search terms defined by a variable

2010-08-03 Thread David Winsemius
On Aug 3, 2010, at 12:05 AM, Daniel Malter wrote: Hi, I have a good grasp of grep() and gsub() for finding and extracting character strings. However, I cannot figure out how to use a search term that is stored in a variable when the search string is more complex. #Say I have a string,

[R] The condition has length 1 and only the first element will be used

2010-08-03 Thread Pablo Cerdeira
Hi All, I'm trying to run the following script in R, but I'm getting a warning saying: Warning message: In if (z 0) { : the condition has length 1 and only the first element will be used As you can see, I'm sending a vector x to the function f without any problem. The function f calculates

[R] Odp: The condition has length 1 and only the first element will be used

2010-08-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 03.08.2010 13:03:33: Hi All, I'm trying to run the following script in R, but I'm getting a warning saying: Warning message: In if (z 0) { : the condition has length 1 and only the first element will be used As you can see, I'm sending

Re: [R] The condition has length 1 and only the first element willbeused

2010-08-03 Thread Gerrit Eichner
Hello, Pablo, if() doesn't accept a vector as its argument the way you may want it to; take a look at ifelse(). Regards -- Gerrit On Tue, 3 Aug 2010, Pablo Cerdeira wrote: Hi All, I'm trying to run the following script in R, but I'm getting a warning saying: Warning message: In if (z

Re: [R] The condition has length 1 and only the first element will be used

2010-08-03 Thread Pablo Cerdeira
Ok thanks, but I have found the solution: ifelse. Here goes a working version of the code: mod = function(x) { ifelse(x 0,x*(-1),x) } f = function(x) { f - mod(x)/x } x - seq(-1,1,0.01) x y - f(x) y plot(f,xlim = c(-1,1)) remove(x,y,f,mod) best regards On Tue, Aug 3, 2010 at 8:03 AM,

Re: [R] Is profile.mle flexible enough?

2010-08-03 Thread Arnaud Le Rouzic
Many thanks to Ben and Peter for their help. Even if I am not really happy with it, I used the environment solution and got the results I expected. Issue #2 is stickier. I think I must say that the idelology of mle() is that the user passes a likelihood function. If the likelihood function

Re: [R] The condition has length 1 and only the first element will be used

2010-08-03 Thread David Winsemius
On Aug 3, 2010, at 7:03 AM, Pablo Cerdeira wrote: Hi All, I'm trying to run the following script in R, but I'm getting a warning saying: Warning message: In if (z 0) { : the condition has length 1 and only the first element will be used ifelse is the proper function rather than

Re: [R] hi!!! guestion!!

2010-08-03 Thread jim holtman
Translate the matlab code to the appropriate R expressions. On Mon, Aug 2, 2010 at 9:57 PM, leepama butch...@hanmail.net wrote: I made some matlab codes... Is there any method to perform matlab codes in R program?? -- View this message in context:

Re: [R] The condition has length 1 and only the first element will be used

2010-08-03 Thread jim holtman
Look at the help page for 'if': A length-one logical vector that is not NA. Conditions of length greater than one are accepted with a warning, but only the first element is used. Other types are coerced to logical if possible, ignoring any class. If you want the positive value, why aren't you

Re: [R] hi!!! guestion!!

2010-08-03 Thread Gabor Grothendieck
On Mon, Aug 2, 2010 at 9:57 PM, leepama butch...@hanmail.net wrote: I made some matlab codes... Is there any method to perform matlab codes in R program?? There is an Octave/R lexicon here: http://cran.r-project.org/doc/contrib/R-and-octave.txt There are also ROctave and R.matlab

[R] subset based on column names and then subset based on the inverse (grep?, or...)

2010-08-03 Thread stephen sefick
I would like to be able to grab x and y columns out of a dataframe and then grab all of the columns that are not equal to x or y. I am sure that I am missing something easy. ftbr_UTM_downstream - (structure(list(site = c(Jennie_Creek_Main_Stem, Wolf_Pit_Creek_Main_Stem,

Re: [R] subset based on column names and then subset based on the inverse (grep?, or...)

2010-08-03 Thread stephen sefick
#this does it sorry for clogging everyones email boxes charmatch(c(x, y), colnames(ftbr_UTM_downstream)) On Tue, Aug 3, 2010 at 6:41 AM, stephen sefick ssef...@gmail.com wrote: I would like to be able to grab x and y columns out of a dataframe and then grab all of the columns that are not

Re: [R] hi!!! guestion!!

2010-08-03 Thread David Winsemius
On Aug 2, 2010, at 9:57 PM, leepama wrote: I made some matlab codes... Is there any method to perform matlab codes in R program?? Octave/Matlab equivalencies: http://cran.r-project.org/doc/contrib/R-and-octave.txt http://rosettacode.org/wiki/Main_Page David Winsemius, MD West

[R] Kruskal Walllis test

2010-08-03 Thread imrib
Hi all My data table (g) contains a continues data column (plant.height) and other columns (columns 8 to 57), each with number of levels of different factors. ANOVA test was done and the p-values were extracted as follos: a - function(x) anova(lm(plant.height ~ x))$Pr(F)[1] r-

Re: [R] subset based on column names and then subset based on the inverse (grep?, or...)

2010-08-03 Thread David Winsemius
On Aug 3, 2010, at 7:41 AM, stephen sefick wrote: I would like to be able to grab x and y columns out of a dataframe and then grab all of the columns that are not equal to x or y. I am sure that I am missing something easy. ftbr_UTM_downstream - (structure(list(site =

[R] Multilevel GEE (2 nested clusters)

2010-08-03 Thread Andreas Jensen
Hi R-Help. I am working on a data set with a 3-level nested structure. I have individuals nested in households and multiple observations on each individual. I assume that the individuals inside a given household are correlated and that the individuals are correlated with themselves over time. The

Re: [R] adding FORTRAN code to a package

2010-08-03 Thread Erin Hodgess
Thank you! Now, here is the code for the FORTRAN subroutine: subroutine cov1(n1,na,x,z,yy,ac) integer n1,na real x(n1),ac(na+1),z,yy do 5 j=1,(na+1) do 10 i=1,(n1-j) if(j.eq.1)ac(j)=yy if(j.ne.1)ac(j)=ac(j)+(x(i)-z)*(x(i+j-1)-z) 10

Re: [R] Problems with normality req. for ANOVA

2010-08-03 Thread Liaw, Andy
As a matter of fact, I would say both Bert and I encounter designed experiments a lot more than observational studies, yet we speak from experience that those things that Bert mentioned happen on a daily basis. When you talk to experimenters, ask your questions carefully and you'll see these

Re: [R] The condition has length 1 and only the first element will be used

2010-08-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 03.08.2010 13:17:16: Ok thanks, but I have found the solution: ifelse. Here goes a working version of the code: mod = function(x) { ifelse(x 0,x*(-1),x) } But before you reinvent wheel try to look if there is not available function already

[R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Michael Haenlein
Dear all, I have one dependent variable y and two independent variables x1 and x2 which I would like to use to explain y. x1 and x2 are design factors in an experiment and are not correlated with each other. For example assume that: x1 - rbind(1,1,1,2,2,2,3,3,3) x2 - rbind(1,2,3,1,2,3,1,2,3)

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Nikhil Kaza
Are x1 and x2 are factors (dummy variables)? cor does not make sense in this case. Nikhil Kaza Asst. Professor, City and Regional Planning University of North Carolina nikhil.l...@gmail.com On Aug 3, 2010, at 9:10 AM, Michael Haenlein wrote: Dear all, I have one dependent variable y and

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Michael Haenlein
Thanks for your comment! Actually, they are continuous variables which have a very low correlation -- I just wanted to make the whole story easier for explanation. My general question is: Does R offer an alternative to lm for situations where there is substantial collinearity between the

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread David Winsemius
I think you are attributing to collinearity a problem that is due to your small sample size. You are predicting 9 points with 3 predictor terms, and incorrectly concluding that there is some inconsistency because you get an R^2 that is above some number you deem surprising. (I got values

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread haenlein
I'm sorry -- I think I chose a bad example. Let me start over again: I want to estimate a moderated regression model of the following form: y = a*x1 + b*x2 + c*x1*x2 + e Based on my understanding, including an interaction term (x1*x2) into the regression in addition to x1 and x2 leads to

[R] Help with Lattice--panel.axis() and a conditioning variable

2010-08-03 Thread Andrew Liu
Hello, I use the following code to generate this plot: http://imgur.com/GsWvY.jpg. How do I remove the labels to the left of the middle axis? Or is there a simpler solution that gets me the same plot. I basically just want to highlight 25.67 on the leftmost axis, and have all other labels

Re: [R] Multibyte characters in (row) names

2010-08-03 Thread Richard R. Liu
David, Thanks.  It turns out that, once you've set up your locales properly, it's almost impossible to create an example for the problem. I'm working with scientific text which contains a fair amount of symbols:  degrees, plus-or-minus, etc.  When I read the text in, I specified UTF-8.  My

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread David Winsemius
On Aug 3, 2010, at 9:51 AM, haenl...@gmail.com wrote: I'm sorry -- I think I chose a bad example. Let me start over again: I want to estimate a moderated regression model of the following form: y = a*x1 + b*x2 + c*x1*x2 + e Based on my understanding, including an interaction term (x1*x2)

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Nikhil Kaza
My usual strategy of dealing with multicollinearity is to drop the offending variable or transform one them. I would also check vif functions in car and Design. I think you are looking for lm.ridge in MASS package. Nikhil Kaza Asst. Professor, City and Regional Planning University of North

[R] Help on Full Factorial Design

2010-08-03 Thread TobiasT
Hi Everyone, I found the doe.base package and the FrF2 package to do nice experimental planning and I'm very happy about this tool I was looking for such a long time. But I still try to find out how to add center points to a full factorial design. The FrF2-package has a center point option but

[R] Need help on upper.tri()

2010-08-03 Thread Ron Michael
HI, I am really messing up to make a symmetrical matrix using upper.tri() lower.tri() function. Here is my code:   set.seed(1) mat = matrix(rnorm(25), 5, 5) mat    [,1]   [,2]   [,3]    [,4]    [,5] [1,] -0.6264538 -0.8204684  1.5117812 -0.04493361  0.91897737 [2,] 

Re: [R] Kruskal Walllis test

2010-08-03 Thread Tal Galili
I would suggest to you the following: 1) Run the same thing, but with a loop instead of apply 2) add the to loop a printing that shows you on what cycle of the loop the function breaks 3) see if that vector has any Inf or NA values (although in general I think you are using a numeric instead of a

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Michael Haenlein
Thanks very much -- it seems that Ridge Regression can do what I'm looking for! Best, Michael -Original Message- From: Nikhil Kaza [mailto:nikhil.l...@gmail.com] Sent: Tuesday, August 03, 2010 16:21 To: haenl...@gmail.com Cc: r-help@r-project.org (r-help@R-project.org) Subject: Re: [R]

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Liaw, Andy
If the collinearity you're seeing arose from the addition of a product (interaction) term, I do not think penalization is the best answer. What is the goal of your analysis? If it's prediction, then I wouldn't worry about this type of collinearity. If you're interested in inference, I'd try some

[R] multiple R sessions from one working directory using GNU screen

2010-08-03 Thread Olga Lyashevska
Dear all, I am using GNU screen to run multiple R sessions from one working directory in order to split task, however I noticed that dataset is not synchronized e.g. if I have two sessions R1 and R2, and I remove an object from R1, R2 doesn't change as expected or change at random. I have tried

[R] how to read/save .zip compressed files from R?

2010-08-03 Thread J . delasHeras
Dear list, is there a way to open a .zip folder so that one can extract and modify files inside and then save teh .zip folder again? thanks! Jose -- Dr. Jose I. de las Heras Email: j.delashe...@ed.ac.uk The Wellcome Trust Centre for Cell BiologyPhone: +44 (0)131

Re: [R] Problems with normality req. for ANOVA

2010-08-03 Thread peter dalgaard
On Aug 3, 2010, at 2:41 PM, Liaw, Andy wrote: As a matter of fact, I would say both Bert and I encounter designed experiments a lot more than observational studies, yet we speak from experience that those things that Bert mentioned happen on a daily basis. When you talk to experimenters,

Re: [R] Kruskal Walllis test

2010-08-03 Thread Wu Gong
The apply function coerces the factor results to a character array apply(g,2,class) # gives character The kruskal.test function doesn't take character vector as the group argument. kruskal.test(as.character(plant.height) ~ as.character(g[,8])) #doesn't work kruskal.test(plant.height ~

Re: [R] Problems with normality req. for ANOVA

2010-08-03 Thread Michael Dewey
At 19:31 02/08/2010, wwreith wrote: I am testing normality on the studetized residuals that are generated after performing ANOVA and yes I used Levene's test to see if the variances can be assumed equal. They infact are not, but I have found a formula for determining whether the p-value for

Re: [R] Help on Full Factorial Design

2010-08-03 Thread TobiasT
Found it out by myself: If you try FrF2(4,2, ncenter=X) you get a full factorial design. Sorry for that. Should have tried before. But maybe this will help somebody else, too. Greetings, Tobias -- View this message in context:

Re: [R] Kruskal Walllis test

2010-08-03 Thread peter dalgaard
On Aug 3, 2010, at 1:47 PM, imrib wrote: Hi all My data table (g) contains a continues data column (plant.height) and other columns (columns 8 to 57), each with number of levels of different factors. ANOVA test was done and the p-values were extracted as follos: a - function(x)

Re: [R] Need help on upper.tri()

2010-08-03 Thread David Winsemius
On Aug 3, 2010, at 7:36 AM, Ron Michael wrote: HI, I am really messing up to make a symmetrical matrix using upper.tri() lower.tri() function. Here is my code: set.seed(1) mat = matrix(rnorm(25), 5, 5) mat [,1] [,2] [,3][,4][,5] [1,] -0.6264538

[R] mixing strings and numeric doubles in an array

2010-08-03 Thread Leigh E. Lommen
I have an array called stocks which contains numeric dates, ticker symbols,prices, etc. stocks[1:3,] DATETICKER PERMNO EXCHCD TSYMBOL TRDSTAT SHROUT PRC RET 1 19950131 EWST 10001 3 EWST A 2224 -7.75000 -0.031250 2 19950228 EWST 10001

[R] How to name matrices from a list with lapply ?

2010-08-03 Thread Carlos Petti
Dear list, I have a list of matrices : i1 - matrix(1:10, nrow = 2, ncol = 5) i2 - matrix(11:20, nrow = 2, ncol = 5) j - list(i1 = i1, i2 = i2) I would like to attribute names to each dimension, for each matrix, as follows : $i1 B1 B2 B3 B4 B5 A1 1 3 5 7 9 A2 2 4 6 8 10 $i2 B1 B2 B3 B4 B5 A1

Re: [R] how to do a IF ELSE in a matrix format

2010-08-03 Thread Hey Sky
thanks everyone. I will try them. Best Wishes Nan   - Original Message From: Steven McKinney smckin...@bccrc.ca To: Hey Sky heyskywal...@yahoo.com; r-help@r-project.org r-help@r-project.org Sent: Mon, August 2, 2010 10:56:32 PM Subject: RE: [R] how to do a IF ELSE in a matrix

[R] About installing R package

2010-08-03 Thread Stephen Liu
Hi folks, CPU - AMD X4 955 Onboard RAM - 8G I'm prepared to learn R and am going to install R package on 64 bit Windows running as VM (guest) on Oracle VituralBox. Please advise 1) I have 64 bit Win7 and Win Server 2008 R2 running as VM on VirtualBox. Which version of Windows will be more

Re: [R] How to name matrices from a list with lapply ?

2010-08-03 Thread Joshua Wiley
Hi Carlos, Look at this: i1 - matrix(1:10, nrow = 2, ncol = 5) i2 - matrix(11:20, nrow = 2, ncol = 5) j - list(i1 = i1, i2 = i2) my.names - list(c(A1, A2), c(B1, B2, B3, B4, B5)) j.new - lapply(j, function (x) {dimnames(x) - my.names; return(x)}) j.new the issue was just that you have to save

[R] How to extract ICC value from irr package?

2010-08-03 Thread chen chao
Hi, all There are 62 samples in my data and I tested 3 times for each one, then I want to use ICC(intraclass correlation) from irr package to test the consistency among the tests. *combatexpdata_p[1:62] is the first text results and combatexpdata_p[63:124] * is the second one and

Re: [R] Need help on upper.tri()

2010-08-03 Thread Nikhil Kaza
try using Matrix package instead mat - Matrix(rnorm(25),5,5) forceSymmetric(mat) The reason your method does not work is because matrix is effectively a vector and the indices increase along rows within a column. Nikhil On Aug 3, 2010, at 7:36 AM, Ron Michael wrote: HI, I am really

Re: [R] How to extract ICC value from irr package?

2010-08-03 Thread Joshua Wiley
Hi Chen, From the documentation (see ?icc) $value: the intraclass correlation coefficient. As an example: set.seed(1) result - icc(matrix(rnorm(20), ncol = 2)) result$value [1] -0.3148786 HTH, Josh On Tue, Aug 3, 2010 at 8:50 AM, chen chao chench...@gmail.com wrote: Hi, all There

Re: [R] How to extract ICC value from irr package?

2010-08-03 Thread Tal Galili
And in general, you can use: str(NameOfObject) To understand it's *str*ucture, and where the value resides. Cheers. Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) |

Re: [R] How to name matrices from a list with lapply ?

2010-08-03 Thread Gabor Grothendieck
On Tue, Aug 3, 2010 at 11:42 AM, Carlos Petti carlos.pe...@gmail.com wrote: Dear list, I have a list of matrices : i1 - matrix(1:10, nrow = 2, ncol = 5) i2 - matrix(11:20, nrow = 2, ncol = 5) j - list(i1 = i1, i2 = i2) I would like to attribute names to each dimension, for each matrix,

[R] glmulti: defining which intractions between variables are to be included

2010-08-03 Thread Marino Taussig De Bodonia, Agnese
Hello, I'm using the glmulti package to run models of all the possible combinations of my variables. However, I am only interested in a few interactions between my variables. I have tried the equivalent of: mod1-lm(y~a+b+c+a:b) glmulti(mod1, level=1) mod2-lm(y~a+b+c+a:b) glmulti(mod2,

[R] launch of free R/Bioconductor Cloud Computing web-service

2010-08-03 Thread hbolouri
We are pleased to announce CRdata.org, a free open-source menu-driven file-sharing and Cloud-Computing web-service for R users. CRdata gives people without R expertise an intuitive graphical interface to R, while R experts can use CRdata to share their algorithms with non-experts, and to manage

Re: [R] Need help on upper.tri()

2010-08-03 Thread William Dunlap
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Nikhil Kaza Sent: Tuesday, August 03, 2010 8:56 AM To: Ron Michael Cc: r-help@r-project.org Subject: Re: [R] Need help on upper.tri() try using Matrix package instead

[R] FW: glmulti: defining which intractions between variables are to be included

2010-08-03 Thread Marino Taussig De Bodonia, Agnese
Hello, I'm using the glmulti package to run models of all the possible combinations of my variables. However, I am only interested in a few interactions between my variables. I have tried the equivalent of: mod1-lm(y~a+b+c+a:b) glmulti(mod1, level=1) mod2-lm(y~a+b+c+a:b) glmulti(mod2,

Re: [R] Need help on upper.tri()

2010-08-03 Thread Ravi Varadhan
There are other ways to make symmetric matrices: 1. mat + t(mat) 2. crossprod(mat) 3. tcrossprod(mat) (1) is slightly faster than (2) and (3) (difference is trivial except for very large matrices), but (2) and (3) are guranteed to give you a positive-semidefinite (PSD) matrices, whereas

[R] Plotting multiple layers(maps) on same page

2010-08-03 Thread LCOG1
Hey guys and gals, I searched through the forum and a bunch of R-mapping dedicated sites but have not found what i know is quite elementary process, mapping more than one layer on the same plot. I need to show some reference lines for the map to make sense. I know the below wont work for

Re: [R] how to do a IF ELSE in a matrix format

2010-08-03 Thread Hey Sky
question again. here is part of my original code for my research question. originally I used a loop with matrix form to do the work and it works (though looks ugly). I have tried the methods mentioned in the above posts and thought I did the same thing. but the new code does not work. the

[R] limits of a data frame size for reading into R

2010-08-03 Thread Dimitri Liakhovitski
I understand the question I am about to ask is rather vague and depends on the task and my PC memory. However, I'll give it a try: Let's assume the goal is just to read in the data frame into R and then do some simple analyses with it (e.g., multiple regression of some variables onto some - just

Re: [R] mixing strings and numeric doubles in an array

2010-08-03 Thread jim holtman
If you do an 'str' on your boject, you will probably find that TICKER is a factor. This is probably not what you want. So when you create the dataframe 'stock', use the parameter 'stringsAsFactors=FALSE' to prevent the conversion to factors. In the mean time, you can do: stocks$TICKER -

Re: [R] hi!!! guestion!!

2010-08-03 Thread Dennis Murphy
Hi: In addition to the previous replies, there is package R.Matlab and a Matlab/R reference at CRAN by David Hiebeler under Contributed Documentation. HTH, Dennis On Mon, Aug 2, 2010 at 6:57 PM, leepama butch...@hanmail.net wrote: I made some matlab codes... Is there any method to perform

Re: [R] limits of a data frame size for reading into R

2010-08-03 Thread jim holtman
You probably don't want an object that is larger than about 25% of the physical memory so that copies can be made during some processing. If you are running on a 32-bit system which will limit you to at most 3GB of memory, then your largest object should not be greater than 800MB. If you want to

Re: [R] how to read/save .zip compressed files from R?

2010-08-03 Thread Jeff Newmiller
In the way you describe it, no. A) There is no such thing as a zip folder. You are most likely being fooled by the visual presentation of zip files in Windows Explorer, which automatically simulates it as a folder, when it is really extracting bits of data as needed to display it. B) Because

Re: [R] mixing strings and numeric doubles in an array

2010-08-03 Thread Wu Gong
Another solution factor(port1[,2], labels=levels(stocks[,2])) - A R learner. -- View this message in context: http://r.789695.n4.nabble.com/mixing-strings-and-numeric-doubles-in-an-array-tp2312091p2312313.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] limits of a data frame size for reading into R

2010-08-03 Thread Duncan Murdoch
On 03/08/2010 1:10 PM, Dimitri Liakhovitski wrote: I understand the question I am about to ask is rather vague and depends on the task and my PC memory. However, I'll give it a try: Let's assume the goal is just to read in the data frame into R and then do some simple analyses with it (e.g.,

Re: [R] Using '[' as a function

2010-08-03 Thread Johann Hibschman
Duncan Murdoch murdoch.dun...@gmail.com writes: On 29/07/2010 6:18 PM, chipmaney wrote: -Why does R recognize '[' as a function? Because it is a function. More explicitly, '[' is a string. sapply then calls match.fun to look up that string to get the function named '['. -Why does it

Re: [R] About installing R package

2010-08-03 Thread Uwe Ligges
On 03.08.2010 17:48, Stephen Liu wrote: Hi folks, CPU - AMD X4 955 Onboard RAM - 8G I'm prepared to learn R and am going to install R package on 64 bit Windows running as VM (guest) on Oracle VituralBox. Please advise 1) I have 64 bit Win7 and Win Server 2008 R2 running as VM on

Re: [R] limits of a data frame size for reading into R

2010-08-03 Thread Dimitri Liakhovitski
Thanks a lot, it's very helpful! Dimitri On Tue, Aug 3, 2010 at 1:53 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 03/08/2010 1:10 PM, Dimitri Liakhovitski wrote: I understand the question I am about to ask is rather vague and depends on the task and my PC memory. However, I'll give

Re: [R] how to read/save .zip compressed files from R?

2010-08-03 Thread Prof Brian Ripley
See also Omegahat package Rcompression (a copy of which for Windows is on CRANextras). But I would do this via unzip, modify, zip On Tue, 3 Aug 2010, Jeff Newmiller wrote: In the way you describe it, no. A) There is no such thing as a zip folder. You are most likely being fooled by the

Re: [R] limits of a data frame size for reading into R

2010-08-03 Thread Dimitri Liakhovitski
And once one above the limit that Jim indicated - is there anything one can do? Thank you! Dimitri On Tue, Aug 3, 2010 at 2:12 PM, Dimitri Liakhovitski dimitri.liakhovit...@gmail.com wrote: Thanks a lot, it's very helpful! Dimitri On Tue, Aug 3, 2010 at 1:53 PM, Duncan Murdoch

Re: [R] limits of a data frame size for reading into R

2010-08-03 Thread Duncan Murdoch
On 03/08/2010 2:28 PM, Dimitri Liakhovitski wrote: And once one above the limit that Jim indicated - is there anything one can do? Yes, there are several packages for handling datasets that are too big to fit in memory: biglm, ff, etc. You need to change your code to work with them, so

Re: [R] Plotting multiple layers(maps) on same page

2010-08-03 Thread Wu Gong
Is this you want? plot((1:20)^2,1:20,type=b,lwd=4,col=blue) lines((1:20)^3,1:20,type=b,lwd=4,col=red) - A R learner. -- View this message in context: http://r.789695.n4.nabble.com/Plotting-multiple-layers-maps-on-same-page-tp2312223p2312414.html Sent from the R help mailing list archive at

Re: [R] Using '[' as a function

2010-08-03 Thread Wu Gong
I have just learned from the R Language Definiation ##Operators are special functions # Examples -(x,1:6) [(x,3) +(3,5) '-'(3,6) '/'(3,6) '*'(3,6) - A R learner. -- View this message in context: http://r.789695.n4.nabble.com/Using-as-a-function-tp2307292p2312424.html Sent from the R help

Re: [R] multiple R sessions from one working directory using GNU screen

2010-08-03 Thread Wu Gong
I don't think one session can get information from another session, except use load. I simulate you situation within one session. Hope it helps. #Simulate the first session object1 - 1:10 save(object1,file=ob1) rm(object1) object1 #Simulate the second session object2 - (1:10)*2

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Dennis Murphy
Hi: On Tue, Aug 3, 2010 at 6:51 AM, haenl...@gmail.com wrote: I'm sorry -- I think I chose a bad example. Let me start over again: I want to estimate a moderated regression model of the following form: y = a*x1 + b*x2 + c*x1*x2 + e No intercept? What's your null model, then? Based on

Re: [R] multiple R sessions from one working directory using GNU screen

2010-08-03 Thread Steven McKinney
Dear Olga An R session is conducted entirely in the RAM memory of your computer, and each invocation of R will have its own memory space, not shared with any other application, including another R session. You will have to architect a scheme to allow one R session to find out about events and

Re: [R] Fwd: Using R for Multiple Regression

2010-08-03 Thread Greg Snow
There are an infinite number of solutions for your example, so I hope you really don't want to see all of them. In theory you could work up some code to start showing them to you, but the sun will go nova and atomize you and your computer before it shows all of them. Expressing the infinite

Re: [R] Plotting multiple layers(maps) on same page

2010-08-03 Thread Nikhil Kaza
you will have a better luck with R-sig-geo. Unfortunately I could not find an easy way for polygon overlays. plot(Tazshape) lines(ugbshape) if ugbshape was a polyline instead of a polygon. Nikhil Kaza Asst. Professor, City and Regional Planning University of North Carolina

[R] concatenate values in the vector

2010-08-03 Thread phoebe kong
Hi all, Is there a function that allow me to concatenate each value in a vector to a string? x-c(a,b,c,d) output string = a+b+c+d Thanks, phoebe [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

Re: [R] concatenate values in the vector

2010-08-03 Thread Henrique Dallazuanna
Try this: paste(x, collapse = '+') On Tue, Aug 3, 2010 at 5:34 PM, phoebe kong sityeek...@gmail.com wrote: Hi all, Is there a function that allow me to concatenate each value in a vector to a string? x-c(a,b,c,d) output string = a+b+c+d Thanks, phoebe [[alternative HTML

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Bert Gunter
Absolutely right. But I think it's also worth adding that when the predictors _are_ correlated, the estimates of their coefficients depend on which are included in the model. This means that one should generally not try to interpret the individual coefficients, e.g. as a way to assess their

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Michael Haenlein
Thanks for all your comments! @Dennis: Are there any thresholds that I can use to evaluate the Variance Inflation Factor? I think I learned at some point that VIF should be less than 10, but probably that is too conservative? You mentioned in your example that a VIF of 13 is not big enough to

[R] REmove level with zero observations

2010-08-03 Thread GL
If I have a column with 2 levels, but one level has no remaining observations. Can I remove the level? Had intended to do it as listed below, but soon realized that even though there are no observations, the level is still there. For instance summary(dbs3.train.sans.influential.obs$HAC)

Re: [R] Collinearity in Moderated Multiple Regression

2010-08-03 Thread Bert Gunter
biased regression coefficients is nonsense. The coefficients are unbiased: their expectation (in the appropriate model) is the true value of the parameters (when estimated by, e.g. least squares). The problem is model selection. I suggest you consult a local statistician, as you seem confused

Re: [R] adding FORTRAN code to a package

2010-08-03 Thread Ray Brownrigg
On Wed, 04 Aug 2010, Erin Hodgess wrote: Thank you! Now, here is the code for the FORTRAN subroutine: subroutine cov1(n1,na,x,z,yy,ac) integer n1,na real x(n1),ac(na+1),z,yy do 5 j=1,(na+1) do 10 i=1,(n1-j) if(j.eq.1)ac(j)=yy

Re: [R] REmove level with zero observations

2010-08-03 Thread Erik Iverson
GL wrote: If I have a column with 2 levels, but one level has no remaining observations. Can I remove the level? What is a 'column'? An element of a data.frame? Does the following help? f1 - factor(L1, levels = c(L1, L2)) levels(f1) f1 - factor(f1) levels(f1) In absence of a

[R] nlme: constraints on fixed effects?

2010-08-03 Thread Marston, Sarah
Dear R Help, Is there a way to set constraints on the fixed effects parameters? Thank you. Sincerely, Sarah Marston [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] releveling a numeric by factor interaction in a lm

2010-08-03 Thread Christy Denckla
How can I relevel a liner model with a numeric by dummy variable interaction to extract the model estimate, std. error, and t-value for the reference factor? Thank you, Christy [[alternative HTML version deleted]] __ R-help@r-project.org

Re: [R] REmove level with zero observations

2010-08-03 Thread Bert Gunter
Actually, you probably want to remove the remaining level -- that is, remove the variable altogether, since if it has only a single value its effect is indistinguishable from the overall mean. Again, complying with the posting guide would be advisable. Bert Gunter Genentech Nonclinical

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