[R] quantmod's addTA plotting functions

2011-05-05 Thread Russ Abbott
Hi, I'm having trouble with quantmod's addTA plotting functions. They seem to work fine when run from the command line. But when run inside a function, only the last one run is visible. Here's an example. test.addTA - function(from = 2010-06-01) { getSymbols(^GSPC, from = from)

[R] R - problem with my loops which operate on raster data

2011-05-05 Thread mateokkk
library(rgdal) my_asc=dir(~/Pulpit/dods/karol/TVDI 113_121,pattern=.asc,recursive=T,full.names=T) for (i in 1:length(my_asc)) { r - readGDAL(my_asc[i]) z - as.matrix(r) vectordata[i] - mean(z) vectordatamax[i] - max(z) vectordatamin[i] - min(z) vectordev[i] - sd(z,na.rm=True) hist(z)

[R] memory and bootstrapping

2011-05-05 Thread E Hofstadler
hello, the following questions will without doubt reveal some fundamental ignorance, but hopefully you can still help me out. I'd like to bootstrap a coefficient gained on the basis of the coefficients in a logistic regression model (the mean differences in the predicted probabilities between

[R] lapply, if statement and concatenating to a list

2011-05-05 Thread Lorenzo Cattarino
Hi R users I was wondering on how to use lapply co when the applied function has a conditional statement and the output is a 'growing' object. See example below: list1 - list('A','B','C') list2 - c() myfun - function(x,list2) { one_elem - x cat('one_elem= ', one_elem, '\n') random -

[R] Extraction of columns from two matrices

2011-05-05 Thread nisha chandran
Hi, I have two matrices with 4885 cols and 36 cols respectively . I would like to extract these 36 columns from the bigger matrix, the column values are different but the column names would be the same.Hence based on the names I would like to perform my operation. So is there any way of

[R] combine lattice plot and standard R plot

2011-05-05 Thread Lucia Cañas
Thank you very much for your help and for your quick answers. Lucía Cañás Ferreiro Instituto Español de Oceanografía Centro Oceanográfico de A coruña Paseo Marítimo Alcalde Francisco Vázquez, 10 15001 - A Coruña, Spain Tel: +34 981 218151 Fax: +34 981 229077 lucia.ca...@co.ieo.es

Re: [R] Panels order in lattice graphs

2011-05-05 Thread Mark Difford
May 04, 2011; 5:50pm Cristina Silva wrote: In lattice graphs, panels are drawn from left to right and bottom to top. The flag as.table=TRUE changes to left to right and top to bottom. Is there any way to change to first top to bottom and then left to right? didn´t find anything neither in

[R] R: join tables in R

2011-05-05 Thread Roccato Alfredo (UniCredit)
Thanks a lot to Steve Lianoglou and Peter Savicky for their help! Alfredo -Messaggio originale- Da: Steve Lianoglou [mailto:mailinglist.honey...@gmail.com] I'd to match-merge 2 tables in such a manner that I keep all the rows in table 1, but not the rows that are in both table 1 and

Re: [R] lapply, if statement and concatenating to a list

2011-05-05 Thread Kenn Konstabel
Hi Lorenzo, On Thu, May 5, 2011 at 8:38 AM, Lorenzo Cattarino l.cattar...@uq.edu.au wrote: Hi R users I was wondering on how to use lapply co when the applied function has a conditional statement and the output is a 'growing' object. See example below: list1 - list('A','B','C') list2 -

Re: [R] memory and bootstrapping

2011-05-05 Thread Prof Brian Ripley
The only reason the boot package will take more memory for 2000 replications than 10 is that it needs to store the results. That is not to say that on a 32-bit OS the fragmentation will not get worse, but that is unlikely to be a significant factor. As for the methodology: 'boot' is support

Re: [R] Str info. Thanks for helping

2011-05-05 Thread Ivan Calandra
Hi William! So... many things to say First, your first steps are completely unnecessary. Just do this: data1 - read.csv(file.choose(), header=TRUE) data1$IND - factor(data1$IND) M - manova(as.matrix(data1[,-1])~data1$IND, data=data1) Though I don't understand why this doesn't work: M -

[R] Options for print()

2011-05-05 Thread Dan Abner
Hello everyone, I have a few questions about the print() fn: 1) I have the following code that does not center the character string: print(The TITLE,quote=FALSE,justify=center) 2) How can I get R to not print the leading [1], etc. when using print()? (Sorry, I don't know what the leading [1]

Re: [R] combine lattice plot and standard R plot

2011-05-05 Thread Mark Difford
On May 04, 2011 at 8:26pm Lucia Cañas wrote: I would like to combine lattice plot (xyplot) and standard R plot (plot and plotCI) in an unique figure. Hi Lucia, Combining the two systems can be done. See: Paul Murrell. Integrating grid graphics output with base graphics output. R News,

Re: [R] Options for print()

2011-05-05 Thread baptiste auguie
Hi, Try this, cat(format(The TITLE, width=80, justify=centre)) HTH, baptiste On 5 May 2011 19:28, Dan Abner dan.abne...@gmail.com wrote: Hello everyone, I have a few questions about the print() fn: 1) I have the following code that does not center the character string: print(The

[R] Remove all whitespaces

2011-05-05 Thread Joel
Hi I got a string that looks something like this 1 2 3 4 5 6 7 8 9 ... and I want it to be 123456789... So I want to remove all spaces (or whitespaces) from my string. Anyone know a good way of doing this? //Joel -- View this message in context:

Re: [R] R - problem with my loops which operate on raster data

2011-05-05 Thread Michael Sumner
Stackoverflow users have attempted to help you improve your question - please don't ignore advice this with an undeclared cross-post here: http://stackoverflow.com/questions/5892548/problem-with-loops-in-r For this list PLEASE do read the posting guide

Re: [R] Simple General Statistics and R question (with 3 line example) - get z value from pairwise.wilcox.test

2011-05-05 Thread JP
On 4 May 2011 15:32, peter dalgaard pda...@gmail.com wrote: On May 4, 2011, at 15:11 , JP wrote: Peter thanks for the fantastically simple and understandable explanation... To sum it up... to find the z values of a number of pairwise wilcox tests do the following: # pairwise tests with

Re: [R] Remove all whitespaces

2011-05-05 Thread Ivan Calandra
Hi Joel, Try this: x - 1 2 3 4 5 6 7 8 9 gsub( , , x) Ivan Le 5/5/2011 10:50, Joel a écrit : Hi I got a string that looks something like this 1 2 3 4 5 6 7 8 9 ... and I want it to be 123456789... So I want to remove all spaces (or whitespaces) from my string. Anyone know a good way

Re: [R] Options for print()

2011-05-05 Thread Andreas Borg
Also take a look at sprintf, which offers everything the C-equivalent has. sprintf returns a string which can be sent to the console via cat. Andreas baptiste auguie schrieb: Hi, Try this, cat(format(The TITLE, width=80, justify=centre)) HTH, baptiste On 5 May 2011 19:28, Dan Abner

[R] Ruby Koans an amazing platform for teaching programming. Would this work with R?

2011-05-05 Thread Pat Schmitz
For those not familiar Ruby Koans is a fantastic platform for teaching many of the basics of programming in the Ruby language. It uses unit tests written for methods each of which describe a component of the Ruby programming language. http://rubykoans.com/ The koans platform has become popular

Re: [R] nls problem with R

2011-05-05 Thread sterlesser
the dataset's form is changed after my post so I repost it here t 0 0.3403 0.4181 0.4986 0.7451 1.0069 1.5535 1.8049 2.4979 6.4903 13.5049 27.5049 41.5049 V(t) 6.053078443 5.56937391 5.45484486 5.193124598 4.31386722 3.645422269 3.587710965 3.740362689 3.699837726 2.908485019 1.888179494

Re: [R] nls problem with R

2011-05-05 Thread sterlesser
ID1 ID2 t V(t) 1 1 0 6.053078443 2 1 0.3403 5.56937391 3 1 0.4181 5.45484486 4 1 0.4986 5.193124598 5 1 0.7451 4.31386722 6 1 1.0069 3.645422269 7 1 1.5535 3.587710965 8

Re: [R] Remove all whitespaces

2011-05-05 Thread Tom Osborn
sed? 1,$s/ //g - Original Message - From: Joel To: r-help@r-project.org Sent: Thursday, May 05, 2011 6:50 PM Subject: [R] Remove all whitespaces Hi I got a string that looks something like this 1 2 3 4 5 6 7 8 9 ... and I want it to be 123456789... So I want

Re: [R] issue with strange characters (readHTMLTable)

2011-05-05 Thread R.T.A.J.Leenders
Thank you. The line of code you give certainly resolves several of the issues. I didn't realize that font support is such a tough matter to realize. Let me express my gratitude to those who provide this for us in R. On 04-05-11, Prof Brian Ripley rip...@stats.ox.ac.uk wrote:

Re: [R] Panels order in lattice graphs

2011-05-05 Thread Deepayan Sarkar
On Wed, May 4, 2011 at 9:20 PM, Cristina Silva csi...@ipimar.pt wrote: Hi all, In lattice graphs, panels are drawn from left to right and bottom to top. The flag as.table=TRUE changes to left to right and top to bottom. Is there any way to change to first top to bottom and then left to right?

Re: [R] Extraction of columns from two matrices

2011-05-05 Thread Dennis Murphy
Hi: Is this what you have in mind? m1 - matrix(rpois(100, 10), nrow = 10, dimnames = list(NULL, paste('V', 1:10, sep = ''))) m2 - matrix(rpois(40, 10), nrow = 10, dimnames = list(NULL, paste('V', c(2, 5, 7, 10), sep = ''))) colnames(m1) colnames(m2) m1[, colnames(m2)] HTH, Dennis On Wed, May

Re: [R] Remove all whitespaces

2011-05-05 Thread Janko Thyson
If your whitespace does not only contain regular spaces, this might also be useful: x.1 - \t1 2 \n3 4 write(x.1, test.txt) x.2 - readLines(test.txt) x.3 - gsub([[:space:]], , x.2) x - paste(x.3, collapse=) See ?regex for details on regular expressions in R. HTH, Janko On 05.05.2011 11:02,

Re: [R] Extraction of columns from two matrices

2011-05-05 Thread nisha chandran
Yea it did... Thanks :) On Thu, May 5, 2011 at 3:07 PM, Dennis Murphy djmu...@gmail.com wrote: Hi: Is this what you have in mind? m1 - matrix(rpois(100, 10), nrow = 10, dimnames = list(NULL, paste('V', 1:10, sep = ''))) m2 - matrix(rpois(40, 10), nrow = 10, dimnames = list(NULL,

[R] Using functions/loops for repetitive commands

2011-05-05 Thread dereksloan
I still need to do some repetitive statistical analysis on some outcomes from a dataset. Take the following as an example; id sex hiv age famsize bmi resprate 1 M Pos 23 2 16 15 2 F Neg 24 5 18

Re: [R] nls problem with R

2011-05-05 Thread Andrew Robinson
Apologies, but I don't see a question here ... am I missing something obvious? Andrew On Thu, May 05, 2011 at 01:20:33AM -0700, sterlesser wrote: ID1 ID2 t V(t) 1 1 0 6.053078443 2 1 0.3403 5.56937391 3 1 0.4181 5.45484486 4

Re: [R] quantmod's addTA plotting functions

2011-05-05 Thread P Ehlers
On 2011-05-05 0:47, Russ Abbott wrote: Hi, I'm having trouble with quantmod's addTA plotting functions. They seem to work fine when run from the command line. But when run inside a function, only the last one run is visible. Here's an example. test.addTA- function(from = 2010-06-01) {

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread Gerrit Eichner
Hello, Derek, see below. On Thu, 5 May 2011, dereksloan wrote: I still need to do some repetitive statistical analysis on some outcomes from a dataset. Take the following as an example; id sex hiv age famsize bmi resprate 1 M Pos 23 2

Re: [R] Panels order in lattice graphs

2011-05-05 Thread Cristina Silva
Thank you very much. Cristina On 05/05/2011 10:44, Deepayan Sarkar wrote: On Wed, May 4, 2011 at 9:20 PM, Cristina Silvacsi...@ipimar.pt wrote: Hi all, In lattice graphs, panels are drawn from left to right and bottom to top. The flag as.table=TRUE changes to left to right and top to

[R] Alter a line in a file.

2011-05-05 Thread Joel
Hi all R users Ive got a file that contains diffrent settings in the manor of: setting1=value1 setting2=value2 setting3=value3 setting4=value4 . . . What I want to do is open the file and change the value of a specific setting like wanna change setting4=value4 - setting4=value5 and then save

Re: [R] Draw a nomogram after glm

2011-05-05 Thread Frank Harrell
Please read the documentation for the rms package, particularly the datadist function. Note that in your subject line glm should be lrm. Frank Komine wrote: Hi all R users I did a logistic regression with my binary variable Y (0/1) and 2 explanatory variables. Now I try to draw my

Re: [R] Alter a line in a file.

2011-05-05 Thread jim holtman
try this: a - readLines(textConnection('setting1=value1 setting2=value2 setting3=value3 setting4=value4')) closeAllConnections() # change values ac - sub('setting4=value4', 'setting4=value5', a) writeLines(ac, con='myFile.txt') On Thu, May 5, 2011 at 8:16 AM, Joel joda2...@student.uu.se wrote:

[R] Odp: Alter a line in a file.

2011-05-05 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 05.05.2011 14:16:04: Joel joda2...@student.uu.se Odeslal: r-help-boun...@r-project.org 05.05.2011 14:16 Hi all R users Ive got a file that contains diffrent settings in the manor of: What file, what is its structure, is it some R object

Re: [R] Outlier removal by Principal Component Analysis : error message

2011-05-05 Thread Claudia Beleites
Dear Boule, thank you for your interest in hyperSpec. In order to look into your *problem* I need some more information. I suggest that we solve the error off-list. Please note also that hyperSpec has its own help mailing list: hyperspec-h...@lists.r-forge.r-project.org (due to the amount of

Re: [R] Alter a line in a file.

2011-05-05 Thread Jannis
Well your question is quite general the solution would involve several steps. Probably the easiest solution would be to read the data in as a dataframe (using read.table()) and using the '=' as the separator of the columns. Then change the desired values in the dataframe and save it back as a

Re: [R] Alter a line in a file.

2011-05-05 Thread Joel
jholtman wrote: a - readLines(textConnection('setting1=value1 setting2=value2 setting3=value3 setting4=value4')) closeAllConnections() # change values ac - sub('setting4=value4', 'setting4=value5', a) writeLines(ac, con='myFile.txt') Problem is that I dont know the value on all the

Re: [R] Alter a line in a file.

2011-05-05 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 05.05.2011 15:13:34: Joel joda2...@student.uu.se Odeslal: r-help-boun...@r-project.org 05.05.2011 15:13 jholtman wrote: a - readLines(textConnection('setting1=value1 setting2=value2 setting3=value3 setting4=value4'))

Re: [R] Simple General Statistics and R question (with 3 line example) - get z value from pairwise.wilcox.test

2011-05-05 Thread peter dalgaard
On May 5, 2011, at 10:58 , JP wrote: On 4 May 2011 15:32, peter dalgaard pda...@gmail.com wrote: On May 4, 2011, at 15:11 , JP wrote: Peter thanks for the fantastically simple and understandable explanation... To sum it up... to find the z values of a number of pairwise wilcox tests

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread dereksloan
Your code may be untested but it works - also helping me slowly to start understanding how to write functions. Thank you. However I still have difficulty. I also have some categorical variables to analyse by age hiv status - i.e. my dataset expands to (for example); id sex hiv age

Re: [R] Simple General Statistics and R question (with 3 line example) - get z value from pairwise.wilcox.test

2011-05-05 Thread JP
Thanks once again Peter, I understand your points -- I fiddled and googled and read some more and found an eas(ier) route: library(coin) t - wilcoxsign_test(a ~ b, alternative = two.sided, distribution = exact()) # This is equivalent to paired wilcox.test pval - pvalue(t) sweet.zscore -

Re: [R] Question about error of non-numeric argument to binary operator

2011-05-05 Thread David Winsemius
On May 5, 2011, at 1:31 AM, Maximo Polanco wrote: I have been trying to do a nls model and gives me the error of a nonnumeric argument This is my data set TT FFT V C table(file=c:/tt2.txt,header=T) fit.model - nls(TT~60*(1+alpha*(v/c)^beta),data=tt2, start=list(alpha=1,

Re: [R] nls problem with R

2011-05-05 Thread Mike Marchywka
Date: Thu, 5 May 2011 01:20:33 -0700 From: sterles...@hotmail.com To: r-help@r-project.org Subject: Re: [R] nls problem with R ID1 ID2 t V(t) 1 1 0 6.053078443 2 1 0.3403 5.56937391 3 1 0.4181 5.45484486 4 1 0.4986 5.193124598 5 1 0.7451

[R] Draw a nomogram after glm

2011-05-05 Thread Komine
Hi all R users I did a logistic regression with my binary variable Y (0/1) and 2 explanatory variables. Now I try to draw my nomogram with predictive value. I visited the help of R but I have problem to understand well the example. When I use glm fonction, I have a problem, thus I use lrm. My

Re: [R] Convert a presence/ absence matrix to a list of presence only

2011-05-05 Thread antu
Thank you, it perfectly worked, except I had to modify some codes on the rep(, maxLen - length(sp)) because it gave me some error, thanks -- View this message in context: http://r.789695.n4.nabble.com/Convert-a-presence-absence-matrix-to-a-list-of-presence-only-tp3468479p3498116.html Sent from

[R] Using error in histograms

2011-05-05 Thread Kristof Ostir
Hello! I am trying to produce a histogram of measurement data (orientation of archaeological structures) that are a subject to measurement error. The normal histogram just computes frequencies, but does not take into account that a particular value is spread over a range of values (in my case the

[R] Insert values to histogram

2011-05-05 Thread matibie
I'm trying to add the exact value on top of each column of an Histogram, i have been trying with the text function but it doesn't work. The problem is that the program it self decides the exact value to give to each column, and ther is not like in a bar-plot that I know exactly which values are

[R] lm weight adj r-sq

2011-05-05 Thread agent dunham
Dear all, First of all apologies, I'm pretty newbie, and secondly I know this is not a question for the forum but I'd be very grateful if you'd help me. I had problems with normality assumptions, and I tried with weights in the linear regression this way: modelw

Re: [R] heatmap.3

2011-05-05 Thread elodie
I am intesrested by your heatmap function (allowing matrix in ColSideColors option). Can you give your complete code of your function? thanks -- View this message in context: http://r.789695.n4.nabble.com/heatmap-3-tp1566584p3498156.html Sent from the R help mailing list archive at Nabble.com.

[R] distance matrix

2011-05-05 Thread antu
Hello all, I am wondering if there is anyway to create distance matrix for replicated data for example, I have a data like sample pop id var1var2var3var4 1.1 1 a 1 1 0 1 1.2 1 a 0 0 1 0 1.3 1

[R] Null

2011-05-05 Thread pcc
This is probably a very simple question but I am completely stumped!I am trying to do shapiro.wilk(x) test on a relatively small dataset(75) and each time my variable and keeps coming out as 'NULL', and shapiro.test(fcv) Error in complete.cases(x) : no input has determined the number of cases

Re: [R] How to fit a random data into Beta distribution?

2011-05-05 Thread Shekhar
Hi, @Steven: Since Beta distribution is a generic distribution by which i mean that by varying the parameter of alpha and beta we can fit any distribution. So to check this i generated a random data from Normal distribution like x.norm-rnorm(n=100,mean=10,sd=10); Now i want to estimate the

Re: [R] Remove all whitespaces

2011-05-05 Thread Shekhar
A more elegant way would be: myString-1 2 3 4 5 myString-paste(unlist(strsplit(myString, )),collapse=) The output will be 12345 Regards, Som Shekhar __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the

[R] functions pandit and treebase in the package apTreeshape

2011-05-05 Thread Arnau Mir
Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau.

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread Shekhar
Hi Derek, You can accomplish your loop jobs by following means: (a) use for loop (b) use while loop (c) use lapply, tapply, or sapply. (i feel lapply is the elegant way ) ---For Loop- for loops are pretty simple to use and is almost similar to any other

[R] Confidence interval for difference in Harrell's c statistics (or equivalently Somers' D statistics)

2011-05-05 Thread Laura Bonnett
Dear All, I am trying to calculate a 95% confidence interval for the difference in two c statistics (or equivalently D statistics). In Stata I gather that this can be done using the lincom command. Is there anything similar in R? As you can see below I have two datasets (that are actually two

[R] RV: R question

2011-05-05 Thread Pamela Santelices Elgueta
which is the maximum large of digits that R has?, because SQL work with 50 digits I think. and I need a software that work with a lot of digits. Thanks. Pamela Santelices Elgueta Estadístico Instituto Nacional de Estadísticas Fono: (56-2) 7962491 Paseo Bulnes 209 oficina 82 Santiago

Re: [R] two-way group mean prediction in survreg with three factors

2011-05-05 Thread Pang Du
Oops, I hope not too. Don't know why I had the brackets around B+C. My model is actually A*B+C. And I'm not sure how to obtain the two-way prediction of AB with C marginalized. Thanks. Pang -Original Message- From: Andrew Robinson [mailto:a.robin...@ms.unimelb.edu.au] Sent:

Re: [R] How to fit a random data into Beta distribution?

2011-05-05 Thread Ravi Varadhan
Beta is not as general as you think. Its support is limited to [0,1], but you are trying to fit data that lies outside of its support. Please read about the beta distribution from a basic stats/prob book. Ravi. From: r-help-boun...@r-project.org

[R] Conditional distribution plot using Model-based Recursive Partitioning

2011-05-05 Thread Alan Fernihough
Hello, I am using the party module to estimate the relationship between the probability of being a student and number of siblings (alive). However, I need to include a number of relevant covariates. My code is below: fm3 - mob(Student ~ age + alive + sex2 + cwa + cha + cym | Religion+Servant +

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread David Winsemius
On May 5, 2011, at 10:01 AM, dereksloan wrote: Your code may be untested but it works - also helping me slowly to start understanding how to write functions. Thank you. However I still have difficulty. I also have some categorical variables to analyse by age hiv status - i.e. my dataset

Re: [R] Confidence interval for difference in Harrell's c statistics (or equivalently Somers' D statistics)

2011-05-05 Thread David Winsemius
On May 5, 2011, at 8:20 AM, Laura Bonnett wrote: Dear All, I am trying to calculate a 95% confidence interval for the difference in two c statistics (or equivalently D statistics). In Stata I gather that this can be done using the lincom command. Is there anything similar in R? Have

Re: [R] distance matrix

2011-05-05 Thread csrabak
Em 5/5/2011 07:34, antu escreveu: Hello all, I am wondering if there is anyway to create distance matrix for replicated data for example, I have a data like sample pop id var1var2var3var4 1.1 1 a 1 1 0 1 1.2 1 a 0

[R] Tone in mailing lists (was issue with strange characters (readHTMLTable))

2011-05-05 Thread Janko Thyson
I did read How To Ask Questions The Smart Way http://www.catb.org/%7Eesr/faqs/smart-questions.html and I don't have a problem with calling me stupid and/or a winer for posting this... What's the purpose of an R Mailing list (especially r-help), after all? IMHO it should be about R users being

[R] Boxplot in order

2011-05-05 Thread Silvano
Hi, I need construct box plot graph, but I want keep Groups order karla = data.frame( Groups = factor(rep(c('CPre','SPre','C7','S7','C14','S14','C21','S21'), 11)), Time = rep(c(0,7,14,21), 11), Resp = valor ) boxplot(Resp~Groups, order=T) doesn't work. How do this?

[R] cross-correlation table with subscript or superscript to indicate significant differences

2011-05-05 Thread yoav baranan
Hi, I wonder whether the following is possible with R, and whether anyone has done that and can share his/her code with me. I have a correlation matrix, and I want to create a correlation table that I can copy to Microsoft Word with a superscript above each correlation, indicating significant

Re: [R] Null

2011-05-05 Thread Yuta Tamberg
There were no problems when I repeated the test with data provided. I simply created a vector

[R] Vermunt's LEM in R

2011-05-05 Thread David Joubert
Hello- Does anyone know of packages that could emulate what J. Vermunt's LEM does ? What is the closest relative in R ? I use both R and LEM but have trouble transforming my multiway tables in R into a .dat file compatible with LEM. Thanks, David Joubert

[R] Compiling a FORTRAN program under Windows 7

2011-05-05 Thread Mikael Anderson
Hi, I am trying to compile a FORTRAN program to call from R under Windows 7 but I am having problem in the compiling step. To demonstrate this is the program testit.f: -- subroutine TESTIT(x,n,m) dimension x(n) do 10 i=1,n 10

Re: [R] Confidence interval for difference in Harrell's c statistics (or equivalently Somers' D statistics)

2011-05-05 Thread Laura Bonnett
Dear David, Thank you for your reply. I have come across rcorrp.cens before. However, I'm not sure it does quite what I want it to. It seems to compare whether one predictor is more concordant than another within the same survival function. I want to see whether one predictor is more

[R] perspective plot

2011-05-05 Thread Mauro
Hello, I`m tryint to plot some variable over x and y coordinate, but can`t figure out hot to do it ( I could do a simple scatterplot3d, but there I can`t change the viewing angle). My dataset looks something like this (dataframe): X Y Q95 21 2628711 1104437 0.7723994 22

Re: [R] cross-correlation table with subscript or superscript to indicate significant differences

2011-05-05 Thread David Winsemius
On May 5, 2011, at 10:48 AM, yoav baranan wrote: Hi, I wonder whether the following is possible with R, and whether anyone has done that and can share his/her code with me. I have a correlation matrix, and I want to create a correlation table that I can copy to Microsoft Word with a

[R] simulate AR(1) process

2011-05-05 Thread Alemtsehai Abate
Dear R users, May any of you tell me how to simulate data on: y_t = a+b*y_{t-1} + u_t where u_t~N(0,sigma^2), b1, and for some constant a. Many thanks Tsegaye tseg...@exeter.ac.uk [[alternative HTML version deleted]] __ R-help@r-project.org

Re: [R] Compiling a FORTRAN program under Windows 7

2011-05-05 Thread Clint Bowman
You are compiling a subroutine not a program and you compile line should read: gfortran testit.f -c testit.o You then reference that object code testit.o in your final loading stage after compiling other routiens and the main program. -- Clint BowmanINTERNET:

Re: [R] simulate AR(1) process

2011-05-05 Thread Phil Spector
?arima.sim - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley

Re: [R] Null

2011-05-05 Thread Thomas Levine
Maybe you were doing something like fcv - read.csv('fcv.csv') instead of fcv - read.csv('fcv.csv')[1] (I haven't tested this.) Tom On Thu, May 5, 2011 at 8:48 AM, pcc polly...@hotmail.com wrote: This is probably a very simple question but I am completely stumped!I am trying to do

Re: [R] Using error in histograms

2011-05-05 Thread Greg Snow
The logspline package does density estimation in a different way than KDE, but it does allow for interval censored data (I know this value is between a and b, but not where in that range) using the oldlogspline function. This may be what you are looking for. -- Gregory (Greg) L. Snow Ph.D.

Re: [R] quantmod's addTA plotting functions

2011-05-05 Thread Russ Abbott
Thanks. You're right. I didn't see that. I read the ?addTA help page, which (annoyingly) didn't mention that feature, but I didn't read the ?TA page. (That page was mentioned as a see also, but not as a must see.) I don't know what it means to wrap these calls in a plot call. I tried to put the

Re: [R] Compiling a FORTRAN program under Windows 7

2011-05-05 Thread Berend Hasselman
Mikael Anderson wrote: Hi, I am trying to compile a FORTRAN program to call from R under Windows 7 but I am having problem in the compiling step. To demonstrate this is the program testit.f: -- subroutine TESTIT(x,n,m) dimension

Re: [R] Null

2011-05-05 Thread Clint Bowman
with(fcv,shapiro.test(case)) -- Clint BowmanINTERNET: cl...@ecy.wa.gov Air Quality Modeler INTERNET: cl...@math.utah.edu Department of Ecology VOICE: (360) 407-6815 PO Box 47600FAX:(360) 407-7534

Re: [R] Insert values to histogram

2011-05-05 Thread Greg Snow
Are you really sure that you want to do that? Read the discussion starting with this post: http://tolstoy.newcastle.edu.au/R/e2/help/07/08/22858.html for reasons why you probably don't (yes, the question is about bar plots not histograms, but much of it will still apply). Near the end of the

Re: [R] quantmod's addTA plotting functions

2011-05-05 Thread Jeff Ryan
There is a struggle in documentation that revolves around being too brief to be useful and too verbose which then is often ignored. In general, R proper is far less verbose than quantmod docs - so if you have trouble with quantmod... from ?addTA Value: ‘addTA’ will invisibly return an S4

Re: [R] Boxplot in order

2011-05-05 Thread Dennis Murphy
Hi: Try this: karla = data.frame( Groups = factor(rep(c('CPre','SPre','C7','S7','C14','S14','C21','S21'), 11), levels = c('CPre','SPre','C7','S7','C14','S14','C21','S21')), Time = rep(c(0,7,14,21), 11), Resp = rnorm(88) ) boxplot(Resp~Groups, data = karla) Since you didn't

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread dereksloan
Thanks David, I did notice that and I got his code to work using wilcox.test for the continuous variables. The problem is that when I tried to alter the code to do chisq.test on my categorical variables there is something wrong with the syntax and I don't know what. Derek -- View this message

Re: [R] perspective plot

2011-05-05 Thread Greg Snow
The persp function expects z to be a matrix, so you could reshape your data so that z is a matrix (the reshape function or package may help). Or the wireframe function in the lattice package expects data more like what you show, that may be the easiest solution. -- Gregory (Greg) L. Snow

Re: [R] quantmod's addTA plotting functions

2011-05-05 Thread P Ehlers
Russ, All you have to do is replace addTA(GSPC.EMA.3, on = 1, col = #ff) with plot(addTA(GSPC.EMA.3, on = 1, col = #ff)) etc. I can sympathize with the documentation frustration, but I think that much of the documentation in R and in many R packages is actually very good. I

Re: [R] quantmod's addTA plotting functions

2011-05-05 Thread Jeff Ryan
Sorry, I forgot to give you a quick example of 'wrapping in plot' plot(addTA(...)) The objects returned by most of the charting functions in quantmod results from the desire for the functions to be syntactically identical whether called from inside of chartSeries (e.g. TA=addMACD() ) as they are

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread David Winsemius
On May 5, 2011, at 1:08 PM, dereksloan wrote: Thanks David, I did notice that and I got his code to work using wilcox.test for the continuous variables. The problem is that when I tried to alter the code to do chisq.test on my categorical variables there is something wrong with the syntax

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread dereksloan
Thanks a lot, I understand what you say but I'm having problems - maybe with the syntax or the specific command. You are right - I have a dataframe to store the data and want to automate the analysis. i.e. I want do a chisq.test with to know if alcohol intake (Y/N) differs between sexes, then

Re: [R] distance matrix

2011-05-05 Thread antu
I don't know whether I understood your question, but 1.1, 1.2 , 1.3 all are subsample of 1 , so, rather than comparing 1000 subsample, comparison of 20 pop level makes more sense in my case. thanks for query - Ananta Acharya Graduate Student -- View this message in context:

Re: [R] cross-correlation table with subscript or superscript to indicate significant differences

2011-05-05 Thread David Winsemius
On May 5, 2011, at 12:40 PM, yoav baranan wrote: Here is an example for my earlier question. Say you have a 3x3 correlation matrix: corrs - matrix(c(0.25,0.32,0.66,0.14,0.24,0.34,0.44,0.34,0.11), nrow=3, ncol=3, dimnames = list(c('varA','varB', 'varC'), c('varA','varB', 'varC'))) And

[R] Using $ accessor in GAM formula

2011-05-05 Thread Gene Leynes
This is not mission critical, but it's bothering me. I'm getting inconsistent results when I use the $ accessor in the gam formula *In window #1:* library(mgcv) dat=data.frame(x=1:100,y=sin(1:100/50)+rnorm(100,0,.05)) str(dat) gam(dat$y~s(dat$x)) Error in eval(expr, envir, enclos) : object

Re: [R] cross-correlation table with subscript or superscript to indicate significant differences

2011-05-05 Thread yoav baranan
Here is an example for my earlier question. Say you have a 3x3 correlation matrix:corrs - matrix(c(0.25,0.32,0.66,0.14,0.24,0.34,0.44,0.34,0.11), nrow=3, ncol=3, dimnames = list(c('varA','varB', 'varC'), c('varA','varB', 'varC')))And another matrix for the sample size of each

Re: [R] Using functions/loops for repetitive commands

2011-05-05 Thread David Winsemius
On May 5, 2011, at 1:45 PM, dereksloan wrote: Thanks a lot, I understand what you say but I'm having problems - maybe with the syntax or the specific command. You are right - I have a dataframe to store the data and want to automate the analysis. i.e. I want do a chisq.test with to

Re: [R] Using $ accessor in GAM formula

2011-05-05 Thread David Winsemius
On May 5, 2011, at 1:08 PM, Gene Leynes wrote: This is not mission critical, but it's bothering me. I'm getting inconsistent results when I use the $ accessor in the gam formula *In window #1:* library(mgcv) dat=data.frame(x=1:100,y=sin(1:100/50)+rnorm(100,0,.05)) str(dat)

[R] R CMD check warning

2011-05-05 Thread swaraj basu
Dear All, I am trying to build a package for a set of functions. I am able to build the package and its working fine. When I check it with R CMD check I get a following warning : no visible global function definition for ‘biocLite’ I have

[R] ANOVA

2011-05-05 Thread Asan Ramzan
Hello R-Help How can i exctact and store the within group mean squared difference from an anova summary table into a varible. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

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