Re: [R] extract worksheet names from an Excel file

2011-06-25 Thread Shi, Tao
Thanks, Gabor!  That's really helpful! ...Tao - Original Message - From: Gabor Grothendieck ggrothendi...@gmail.com To: Shi, Tao shida...@yahoo.com Cc: r-help@r-project.org r-help@r-project.org Sent: Friday, June 24, 2011 5:02 AM Subject: Re: [R] extract worksheet names from an

[R] What does class call mean? How do I make class formula into a call?

2011-06-25 Thread StellathePug
Hello R Users! I have a list called tabs that I would like to have the same structure as my list eqSystem. The two look like they have the same structure but they are different because when I look at their attributes, class(eqSystem[[1]]) is call but class(tabs[[1]]) is formula. I want to have

[R] Need help on a R script part

2011-06-25 Thread Lusk Aris
Hi all, I need all your help on this. I have the next part of code:e1=x1-mean(x1)e2=x2-mean(x2)n1=length(x1)n2=length(x2N=(n1 + n2)nu2=sum( c( ( x1 -mean(x1) )^2 , ( x2-mean(x2) )^2 ) )/Nss=c(e1,e2) b3= N*sum(ss^4)/ (sum( ss^2)^2)what do lines 6-8 (mathematical

[R] Error in qr.solve(crossprod(xsar), t(xsar)) when using SpatialFiltering

2011-06-25 Thread Aquarius
I am using the R function SpatialFiltering to my land value dataset. I compute a 500 by 500 binary spatial weight matrix (W) based on the x and y coordinates in my land value dataset. The nearest 6 neighbours were given a value of 1. By construction Wii=0. So my weight matrix look like 0 ..1 0 0

[R] a Weighted Least Square model for a binary response variable

2011-06-25 Thread Vivian Zhuang
Dear R Users, I would like to use R to fit a Weighted Least Square model for a binary response variable, say Y. The model is actually the model widely used for a binary dependent variable when the logistic model has not been invented. The weight is 1/(E(Y)(1-E(Y)). Could someone help me out?

Re: [R] Extract character from the end of a string

2011-06-25 Thread jwehr
Thank you, Joshua! I got what I was looking for using this command: as.numeric(grepl(\\*$, qb$Player)) Where the variable name is Player in dataset qb. -- View this message in context: http://r.789695.n4.nabble.com/Extract-character-from-the-end-of-a-string-tp3621732p3624124.html Sent from

[R] about partial response and partial residual

2011-06-25 Thread pigpigmeow
i use mgcv package First, what is the different between partial response and partial residual plot? actually, is it partial response is as same as partial regression? second, if I use log-link fuction, how to plot partial response and partial residual plot by R? Finally, If I want to plot

Re: [R] Fastest way of finding if any members of vector x fall in the range of the rows of matrix y

2011-06-25 Thread Dimitris Rizopoulos
yet another solution is: v - c(1, 2, 6, 5) w - matrix(c(1, 4, 3, 5, 8, 10), ncol = 2, byrow = TRUE) check - outer(w[, 1], v, -) * outer(w[, 2], v, -) v[which(check = 0, arr.ind = TRUE)[, 2]] Best, Dimitris On 6/24/2011 10:05 PM, Martin Morgan wrote: On 06/24/2011 11:12 AM, Dennis Murphy

Re: [R] On .. glibc detected home/sguha/lib64/R/bin/exec/R: realloc(): invalid next size: 0x000000000209e210 ***

2011-06-25 Thread Hugo Mildenberger
Saptarshi, if you look at the sheer number of shared libraries involved, heap corruption may have happened due to errors in any of these. Finding the reason for such problems is usually difficult, but almost impossible without a reproducible example. If you could boil it down to a minimal

[R] Access R functions from web

2011-06-25 Thread Orvalho Augusto
I need a way to send R objects and call R functions from web. Is there any project close or similar to that? I want to be able to send an HTTP rquest from an existing application with some data. And obtain a plot from R. Thanks in advance Caveman [[alternative HTML version deleted]]

Re: [R] On .. glibc detected home/sguha/lib64/R/bin/exec/R: realloc(): invalid next size: 0x000000000209e210 ***

2011-06-25 Thread Uwe Ligges
On 25.06.2011 02:12, Saptarshi Guha wrote: Hello, I'm trying to use rjson to parse a JSON object. The object can be found here http://pastebin.com/np0s5hgM (you'll probably need to add quotes around the content) fromJSON returns the error glibc detected home/sguha/lib64/R/bin/exec/R:

[R] Problems setting language in R-2.13.0 and opening RData

2011-06-25 Thread Manabu Sakamoto
Dear list, I just recently installed R-2.13.0 on my Windows7. I used to run R-2.10.0. First of all, I used to be able to install R in English (in R-2.10.0) during the installation procedure. My PC is in a Japanese environment but I want R to be in English because I won't be able to interpret any

Re: [R] Extract character from the end of a string

2011-06-25 Thread Uwe Ligges
1. Please always quote the original message when sending messages to this *mailing list*. 2. Please send your answers and comments also to the original poster who may not be aware you posted to the list. Uwe Ligges On 25.06.2011 06:55, jwehr wrote: Thank you, Joshua! I got what I was

Re: [R] Time-series analysis with treatment effects - statistical approach

2011-06-25 Thread Mike Marchywka
Date: Thu, 23 Jun 2011 15:41:25 -0700 From: jmo...@student.canterbury.ac.nz To: r-help@r-project.org Subject: Re: [R] Time-series analysis with treatment effects - statistical approach Mike Marchywka wrote: I discovered a way to do repetitive tasks that can be concisely

Re: [R] Need help on a R script part

2011-06-25 Thread Hugo Mildenberger
Lusk, if I were in your business, I would tackle such a problem with help from a little formatting ... e1=x1-mean(x1) e2=x2-mean(x2) n1=length(x1) n2=length(x2) N=(n1 + n2) nu2=sum( c( ( x1 -mean(x1) )^2 , ( x2-mean(x2) )^2 ) )/N ss=c(e1,e2) b3=N*sum(ss^4)/(sum( ss^2)^2)

Re: [R] Competing-risks nomogram

2011-06-25 Thread Firas Abdollah
Many thanks for the prompt response. However, I am afraid that it is not completely clear for me. I apologize, I am not a statistician. Sorry, may be what I will say make totally non sense, but what I understood is the following: Let's suppose that I need to predict cancer-specific survival using

Re: [R] Access R functions from web

2011-06-25 Thread Mike Marchywka
From: orvaq...@gmail.com To: r-help@r-project.org Subject: [R] Access R functions from web I need a way to send R objects and call R functions from web. Is there any project close or similar to that? I want to be able to send an HTTP rquest from an existing application with some

Re: [R] Problems setting language in R-2.13.0 and opening RData

2011-06-25 Thread Uwe Ligges
On 25.06.2011 11:48, Manabu Sakamoto wrote: Dear list, I just recently installed R-2.13.0 on my Windows7. I used to run R-2.10.0. First of all, I used to be able to install R in English (in R-2.10.0) during the installation procedure. My PC is in a Japanese environment but I want R to be in

Re: [R] try to generate graph for each element of my list

2011-06-25 Thread Uwe Ligges
On 24.06.2011 21:29, n.via...@libero.it wrote: Dear all, I have the following problem. I have a List of time series dataframe.I'm trying to produce specific graph for each element of my list. The code is: This is my list: Lista_import-lapply(Lista_import, function(x){ x2-subset(x,

Re: [R] What does class call mean? How do I make class formula into a call?

2011-06-25 Thread David Winsemius
On Jun 24, 2011, at 6:12 PM, StellathePug wrote: Hello R Users! I have a list called tabs that I would like to have the same structure as my list eqSystem. The two look like they have the same structure but they are different because when I look at their attributes, class(eqSystem[[1]])

Re: [R] Installation of bigmemory fails

2011-06-25 Thread Jay Emerson
Premal, Package authors generally welcome direct emails. We've been away from this project since the release of 2.13.0 and I only just noticed the build errors. These generally occur because of some (usually small and solvable) problem with compilers and the BOOST libraries. We'll look at it

[R] AUTO: Chalk, Alan has a new email address

2011-06-25 Thread Alan Chalk
I am out of the office until 01/05/2012. Please note that I have changed email address. You can contact me at alan.ch...@uk.rsagroup.com Note: This is an automated response to your message R-help Digest, Vol 100, Issue 26 [Virus checked] sent on 25/06/2011 11:00:11. This is the only

Re: [R] texi2dvi runs but produces no output

2011-06-25 Thread David Hewitt
Christiaan, Sorry I did not respond earlier. I have been away on vacation. With all the changes in LyX 2.x to make Sweave stuff easier, I suspect this problem should go away. I have not upgraded my system, but a couple folks that have done so reported no problems with a setup like yours. Probably

Re: [R] Need help on a R script part

2011-06-25 Thread Mike Miller
I'm curious about what would cause this (see below), if it isn't a joke. Is it possible that it didn't look ridiculous in the deleted HTML but the text looked bad? It's almost unreadable. I guess the HTML gets deleted because it is a waste of space, but I received a 14 MB message from this

[R] integration function

2011-06-25 Thread li li
Hi all, Can anyone please take a look at the following two functions. The answer does not seem to be right. Thank you very much! f1 - function(x) {integrand - function (x, mu){ dnorm(x, mean=mu, sd=1)*dnorm(mu, mean=2, sd=1) }

[R] Vector with factors inside lists/tuples

2011-06-25 Thread Håvard Wahl Kongsgård
Hi, this seems like a strange question, but in R is there a function that can handle vectors containing factors inside lists/tuples? Or is there some other approach/functions I can use? Like for example V1 {Harry,Brown) {Brown,Harry) I want to use these variables in a machine learning setting,

Re: [R] integration function

2011-06-25 Thread Peter Ehlers
On 2011-06-25 08:48, li li wrote: Hi all, Can anyone please take a look at the following two functions. The answer does not seem to be right. Thank you very much! f1- function(x) {integrand- function (x, mu){ dnorm(x, mean=mu, sd=1)*dnorm(mu, mean=2, sd=1)

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread Håvard Wahl Kongsgård
Well, when a think of it using an array would be a simple solution. But to what extent are arrays supported by other R functions? -Håvard 2011/6/25 Håvard Wahl Kongsgård haavard.kongsga...@gmail.com Hi, this seems like a strange question, but in R is there a function that can handle vectors

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread David Winsemius
On Jun 25, 2011, at 12:49 PM, Håvard Wahl Kongsgård wrote: Hi, this seems like a strange question, but in R is there a function that can handle vectors containing factors inside lists/tuples? Yes, A very strange question, indeed ... since dataframes are lists that commonly contain

[R] How to export to pdf in landscape orientation?

2011-06-25 Thread Juan Andres Hernandez
Does anybody know how to get a pdf file with landscape orientation?. pdf(file= 'my_file.pdf' ,onefile=T,paper='A4') plot(sin, -pi, 2*pi) dev.off() Thank's in advance Juan A. Hernandez Spain [[alternative HTML version deleted]] __

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread David Winsemius
On Jun 25, 2011, at 1:33 PM, Håvard Wahl Kongsgård wrote: Well, when a think of it using an array would be a simple solution. But to what extent are arrays supported by other R functions? Arrays are well supported by arithmetic, logical and accessor functions. Your questions seem very

Re: [R] How to export to pdf in landscape orientation?

2011-06-25 Thread Rainer Schuermann
Tell PDF the size of your piece of paper - here is what works for me: pdf( file = result.pdf, width = 28, height = 18 ) # numbers are cm some( stuff ) dev.off() Hope it helps, Rainer On Saturday 25 June 2011 18:46:28 Juan Andres Hernandez wrote: Does anybody know how to get a pdf

Re: [R] How to export to pdf in landscape orientation?

2011-06-25 Thread Sarah Goslee
From the help for pdf: paper: the target paper size. The choices are ‘a4’, ‘letter’, ‘legal’ (or ‘us’) and ‘executive’ (and these can be capitalized), or ‘a4r’ and ‘USr’ for rotated (‘landscape’). So I'd use paper='a4r'. You can also set the width and height

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread Håvard Wahl Kongsgård
Hi, sorry my question was not really clear  |Are you very early in efforts at learning R? No, have been a long term user of R, but only use R for the statistical stuff. The heart of the issue is that I have list of keywords that I want to analyse with a machine learning algorithm (20 000

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread David Winsemius
On Jun 25, 2011, at 2:13 PM, Håvard Wahl Kongsgård wrote: Hi, sorry my question was not really clear |Are you very early in efforts at learning R? No, have been a long term user of R, but only use R for the statistical stuff. The heart of the issue is that I have list of keywords that I

Re: [R] Problems setting language in R-2.13.0 and opening RData

2011-06-25 Thread Prof Brian Ripley
Please see the rw-FAQ. And your claims about 2.10.0 are simply not true. There only ever has been an option to choose the language of the installer: see the rw-FAQ. On Sat, 25 Jun 2011, Manabu Sakamoto wrote: Dear list, I just recently installed R-2.13.0 on my Windows7. I used to run

Re: [R] Need help on a R script part

2011-06-25 Thread Duncan Murdoch
On 11-06-25 11:33 AM, Mike Miller wrote: I'm curious about what would cause this (see below), if it isn't a joke. Is it possible that it didn't look ridiculous in the deleted HTML but the text looked bad? It's almost unreadable. I guess the HTML gets deleted because it is a waste of space, but

Re: [R] Access R functions from web

2011-06-25 Thread Tobias Verbeke
Hi Caveman, On 06/25/2011 11:18 AM, Orvalho Augusto wrote: I need a way to send R objects and call R functions from web. Is there any project close or similar to that? I want to be able to send an HTTP rquest from an existing application with some data. And obtain a plot from R. This is one

Re: [R] Competing-risks nomogram

2011-06-25 Thread Frank Harrell
Yes you use the linear predictor from your regression as the dependent variable in the rms package's ols function. You will get an R^2 of 1.0. You can depict the ols model with nomogram(). Note that there are so many statistical issues in competing risks that doing this without a statistician

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread Håvard Wahl Kongsgård
glm( V0 ~ HARRY  + KLINE + Brown + Larry) No. You are mistaken. Assuming that V0 is defined and has the same length as there are rows in that data.frame, then V1 and V2 would be the arguments in the formula and they would not be quoted. ?glm   # and work through the examples With the

Re: [R] What does class call mean? How do I make class formula into a call?

2011-06-25 Thread peter dalgaard
On Jun 25, 2011, at 15:24 , David Winsemius wrote: On Jun 24, 2011, at 6:12 PM, StellathePug wrote: Hello R Users! I have a list called tabs that I would like to have the same structure as my list eqSystem. The two look like they have the same structure but they are different because

Re: [R] Vector with factors inside lists/tuples

2011-06-25 Thread David Winsemius
On Jun 25, 2011, at 4:01 PM, Håvard Wahl Kongsgård wrote: glm( V0 ~ HARRY + KLINE + Brown + Larry) No. You are mistaken. Assuming that V0 is defined and has the same length as there are rows in that data.frame, then V1 and V2 would be the arguments in the formula and they would not be

Re: [R] How to export to pdf in landscape orientation?

2011-06-25 Thread Berry Boessenkool
Hey Juan, paper=a4r or USr for rotated (‘landscape’)) i.e. pdf(file='my_file.pdf', onefile=T, paper='A4r') plot(sin, -pi, 2*pi) ; dev.off() Greetings from Potsdam University, Germany, Berry Boessenkool From: jhernandezcabr...@gmail.com Date: Sat, 25 Jun 2011 18:46:28 +0100 To:

[R] Moving average in a data table

2011-06-25 Thread Roman Naumenko
Hi, I'm trying to figure out common approach on calculating MA on a dataset that contains column time. After digging around, I believe functions rollmean and rollaply should be used. However I don't quite understand the requirements for the underlying data. Should it be zoo object type?

Re: [R] Competing-risks nomogram

2011-06-25 Thread Firas Abdollah
Many thanks On Sat, Jun 25, 2011 at 10:00 PM, Frank Harrell [via R] ml-node+3625011-8897305-247...@n4.nabble.com wrote: Yes you use the linear predictor from your regression as the dependent variable in the rms package's ols function.  You will get an R^2 of 1.0.  You can depict the ols

[R] log-link function problem

2011-06-25 Thread pigpigmeow
y-gam(a~s(b),family=gaussian(link=log),data) y-gam(loga~s(b), family =gaussian (link=identity),data) y-gam(loga~s(b),family=gaussian(link=log),data) what are the diffent these 3 equations? -- View this message in context:

[R] Multivariate normal density in C for R

2011-06-25 Thread zerfetzen
Does anyone know of a package that uses C code to calculate a multivariate normal density? My goal is to find a faster way to calculate MVN densities and avoid R loops or apply functions, such as when X and mu are N x K matrices, as opposed to vectors, and in this particular case, speed really

[R] calling R from C

2011-06-25 Thread Desi Ap
I read R extensions on calling R within c code. I am on windows vista, cygwin and R-2.13.0.I can compile link the c code with following commands$gcc -I/cygdrive/c/Progra~1/R/R-2.13.0/include -c -ggdb Rhello.c gcc-L/cygdrive/c/Progra~1/R/R-2.13.0/bin/i386 -oRhello Rhello.o -lR However I cant run

Re: [R] ggplot2 month and year boxplot x axis order problem

2011-06-25 Thread philipharrison
Hi, Thanks, although I dont think it was the Date.Time variable that was the problem because my x variable was Month.Year. I realise now that this month variable was a factor and I changed the order of the factor using the following :

Re: [R] Moving average in a data table

2011-06-25 Thread Gabor Grothendieck
On Sat, Jun 25, 2011 at 3:15 PM, Roman Naumenko ro...@naumenko.ca wrote: Hi, I'm trying to figure out common approach on calculating MA on a dataset that contains column time. After digging around, I believe functions rollmean and rollaply should be used. However I don't quite understand

Re: [R] What does class call mean? How do I make class formula into a call?

2011-06-25 Thread David Winsemius
On Jun 25, 2011, at 4:33 PM, peter dalgaard wrote: On Jun 25, 2011, at 15:24 , David Winsemius wrote: On Jun 24, 2011, at 6:12 PM, StellathePug wrote: Hello R Users! I have a list called tabs that I would like to have the same structure as my list eqSystem. The two look like they have

Re: [R] calling R from C

2011-06-25 Thread David Winsemius
On Jun 25, 2011, at 11:18 AM, Desi Ap wrote: I read R extensions on calling R within c code. I am on windows vista, cygwin and R-2.13.0.I can compile link the c code with following commands$gcc -I/cygdrive/c/Progra~1/R/R-2.13.0/include -c - ggdb Rhello.c

Re: [R] calling R from C

2011-06-25 Thread Barry Rowlingson
On Sat, Jun 25, 2011 at 4:18 PM, Desi Ap des...@yahoo.com wrote: I read R extensions on calling R within c code. I am on windows vista, cygwin and R-2.13.0.I can compile link the c code with following commands$gcc -I/cygdrive/c/Progra~1/R/R-2.13.0/include -c -ggdb Rhello.c

Re: [R] reading data from password protected url

2011-06-25 Thread Duncan Temple Lang
Hi Steve RCurl can help you when you need to have more control over Web requests. The details vary from Web site to Web site and the different ways to specify passwords, etc. If the JSESSIONID and NCES_JSESSIONID are regular cookies and returned in the first request as cookies, then you can

Re: [R] calling R from C

2011-06-25 Thread Desi Ap
hey David:Newbie here. will avoid duplicates next time. thanks... -krishna --- On Sat, 6/25/11, David Winsemius dwinsem...@comcast.net wrote: From: David Winsemius dwinsem...@comcast.net Subject: Re: [R] calling R from C To: Desi Ap des...@yahoo.com Cc: r-help@r-project.org Date: Saturday, June