Re: [R] Memory Utilization on R

2012-03-23 Thread Kurinji Pandiyan
Yes, I am. Thank you, Kurinji On Mar 22, 2012, at 10:27 PM, R. Michael Weylandt michael.weyla...@gmail.com wrote: Use 64bit R? Michael On Thu, Mar 22, 2012 at 5:22 PM, Kurinji Pandiyan kurinji.pandi...@gmail.com wrote: Hello, I have a 32 GB RAM Mac Pro with a 2*2.4 GHz quad core

Re: [R] trouble for parsing HTML files

2012-03-23 Thread Julien Velcin
Here it is: R version 2.14.2 (2012-02-29) Platform: i386-apple-darwin9.8.0/i386 (32-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1]

[R] Odp: question

2012-03-23 Thread Petr PIKAL
How do you run a regression in R? By invoking appropriate function for regression. ??reggression Regards Petr [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

[R] R Error : DATA to MATRIX

2012-03-23 Thread ritwik_r
Dear Sir/Madam, I'm getting a problem with a R-code which converts a data frame to a matrix. It first generate a (m^(n-m) * m) matrix A and then regenerate another matrix B having less dimension than A which satisfy some condition. Now I wish to assign each row of B to a vector as individual.

Re: [R] Computing High Order Derivatives (Numerically)

2012-03-23 Thread Petr Savicky
On Fri, Mar 23, 2012 at 12:35:57AM +0100, Gildas Mazo wrote: Dear R users, Let f be a function over d variables x1,..,xd. I want to compute the k^th-order derivative with respect to x1,..,xk (k=d). I have a by hand solution (see below) using an iterating code using D. However, I expect d

Re: [R] R (Bold font) and Latex

2012-03-23 Thread Rainer Schuermann
More information (reproducible code) is needed to address your specific situation, but in general, you change the value of a variable in R and take care of the formatting in LaTeX. You may want to look at the Hmisc package's Latex() function. I have not tried it, xtable serves me well, but

Re: [R] Quicker way to apply values to a function

2012-03-23 Thread Petr Savicky
On Thu, Mar 22, 2012 at 04:17:20PM -0700, casperyc wrote: Hi all, myint=function(mu,sigma){ integrate(function(x) dnorm(x,mu,sigma)/(1+exp(-x)),-Inf,Inf)$value } mymu=seq(-3,3,length(1000)) mysigma=seq(0,1,length(500))[-1] k=1 v=c() for (j in 1:length(mymu)) { for (i in

[R] loops

2012-03-23 Thread Brockagh
Hi I'm running QDA on some data and calculating the discriminant function. qda.res - qda(type ~ npreg + glu + bp + skin + bmi + ped + age) ind_yes - c(1:N)[type == Yes] ind_no - c(1:N)[type == No] cov_yes - cov(table[ind_yes, 1:7] ) cov_no - cov(table[ind_no, 1:7] ) covar-list(cov_no,

[R] how to know perfect execution of function ? if error occurred in execution, how to report it?

2012-03-23 Thread sagarnikam123
i have one for loop,in which i am dealing with time series arima function, while iterating at some stage there is a error, like Error in arima(x, c(p, 0, q)) : non-stationary AR part from CSS i want to know at which step this error occurred print that iterating number e.g. x-c(1:10) for (i in

Re: [R] how to know perfect execution of function ? if error occurred in execution, how to report it?

2012-03-23 Thread Jim Holtman
?try Sent from my iPad On Mar 23, 2012, at 3:32, sagarnikam123 sagarnikam...@gmail.com wrote: i have one for loop,in which i am dealing with time series arima function, while iterating at some stage there is a error, like Error in arima(x, c(p, 0, q)) : non-stationary AR part from CSS

Re: [R] Randomly select elements based on criteria

2012-03-23 Thread Petr Savicky
On Thu, Mar 22, 2012 at 11:42:53AM -0700, aly wrote: Hi, I want to randomly pick 2 fish born the same day but I need those individuals to be from different families. My table includes 1787 fish distributed in 948 families. An example of a subset of fish born in one specific day would look

[R] Remove wireframe outer box but keep ticks

2012-03-23 Thread Bigelow, Seth W -FS
I would like to eliminate the outer box around a lattice wireframe graph, but the usual recommended solution, which is to assign a color of 'transparent' to the axis.line parameter, eliminates ticks if the 'arrows=F' command is used, as shown in the following example: test =

Re: [R] how to know perfect execution of function ? if error occurred in execution, how to report it?

2012-03-23 Thread Claudia Beleites
In addition, if you need to dig down why the error occurs: ?traceback ?recover HTH Claudia Am 23.03.2012 10:29, schrieb Jim Holtman: ?try Sent from my iPad On Mar 23, 2012, at 3:32, sagarnikam123 sagarnikam...@gmail.com wrote: i have one for loop,in which i am dealing with time

[R] Read File for Matrix with rownames

2012-03-23 Thread MSousa
Good morning, Good morning, I'm trying to read the file into an array, with the following code. A- as.matrix(read.csv(~/Desktop/Results/Cfile.csv, header = FALSE, sep=,)) The content of the file ,1,2,3,4 1, 484,43,67,54 2,54,35,67,34 3,69,76,78,55 4,67,86,44,34 What I needed is that

Re: [R] Randomly select elements based on criteria

2012-03-23 Thread Petr Savicky
On Fri, Mar 23, 2012 at 10:56:11AM +0100, Petr Savicky wrote: On Thu, Mar 22, 2012 at 11:42:53AM -0700, aly wrote: [...] I want to randomly select two rows but they have to be from different fam. The fist part (random selection), I got it by doing: ran - sample(nrow (fish), size=2); ran

[R] [R-pkgs] New package cloudRmpi: Cloud-based parallel proccessing for R

2012-03-23 Thread Barnet Wagman
cloudRmpi is means for doing parallel processing in R, using MPI on a cloud-based network. It currently supports the use of Amazon's EC2 cloud computer service. cloudRmpi provides a mechanism to launch and manage a cloud-based network and to access an R session on the network's master MPI

Re: [R] Read File for Matrix with rownames

2012-03-23 Thread Djordje Bajic
first problem: the blank space in first position in the first line. Try removing it, so that the file looks like this: 1,2,3,4 1,484,43,67,54 2,54,35,67,34 3,69,76,78,55 4,67,86,44,34 Second: your colnames and rownames are numeric; R recognizes it but puts an X (but it recognizes the rownames

[R] Comples Boxplots in R . Resources

2012-03-23 Thread Alaios
Dear all, I want to have a box plot for 7 datasets I have. The different here is that each of these 7 data sets has two status . The on and off. So I give a small example below with 2 data sets only List of 2  $ :List of 2   ..$ : num [1:3502, 1] 0 0 0 0 0 0 0 0 0 0 ... # On Status   ..$ : num

[R] Phylogenetics quartets distance

2012-03-23 Thread Kaustubh Raosaheb Patil
Hi all, I have a specific question about comparing phylogenies. Is there any function available to calculate quartets distance between a pair of trees? My apologies if it exists and I overlooked it. cheers __ R-help@r-project.org mailing list

Re: [R] R Error : DATA to MATRIX

2012-03-23 Thread Petr PIKAL
Hi See in text. Dear Sir/Madam, I'm getting a problem with a R-code which converts a data frame to a matrix. It first generate a (m^(n-m) * m) matrix A and then regenerate another matrix B having less dimension than A which satisfy some condition. Now I wish to assign each row of B

Re: [R] R Error : DATA to MATRIX

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 2:53 AM, ritwi...@isical.ac.in wrote: Dear Sir/Madam, I'm getting a problem with a R-code which converts a data frame to a matrix. It first generate a (m^(n-m) * m) matrix A and then regenerate another matrix B having less dimension than A which satisfy some condition.

Re: [R] Comples Boxplots in R . Resources

2012-03-23 Thread R. Michael Weylandt
Take a look at example(boxplot) and example(bxp) I think the last one for boxplot (with the guinea pig teeth!) will work for you and I believe you can manipulate the linetype the same way they do color there. Though looking at your data, it seems problematic that your values are so

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread Paul Miller
Hi Michael, Added a little more to my code (see below). It now automatically sets the name of the file. It also does a better job of spacing the text for pattern and patient x line at the top of the graph. I really like the way this looks now. I just need to figure out how to loop through the

Re: [R] trouble for parsing HTML files

2012-03-23 Thread R. Michael Weylandt
I just tried it on R. 2.14.1 and R 2.15.0 RC (r58802) and both worked with XML 3.9-4 on both 32 and 64-bit R on my Mac OS X 10.6.8 with the same locale setting so I can only guess it's one of three things: i) The website is generating different content for you than for Milan and me [wild guess]

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread R. Michael Weylandt
Inline. On Fri, Mar 23, 2012 at 9:40 AM, Paul Miller pjmiller...@yahoo.com wrote: Hi Michael, Added a little more to my code (see below). It now automatically sets the name of the file. It also does a better job of spacing the text for pattern and patient x line at the top of the graph.

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread Petr PIKAL
Hi Added a little more to my code (see below). It now automatically sets the name of the file. It also does a better job of spacing the text for pattern and patient x line at the top of the graph. I really like the way this looks now. I just need to figure out how to loop through the

Re: [R] Comples Boxplots in R . Resources

2012-03-23 Thread ONKELINX, Thierry
Dear Alex, Have a look at the ggplot2 package n - 3502 junk - list(list(matrix(rnorm(n), ncol = 1), matrix(rnorm(n, sd = 2), ncol = 1)), list(matrix(rnorm(n, mean = 1), ncol = 1), matrix(rnorm(n, mean = 1, sd = 2), ncol = 1)), list(matrix(rnorm(n, mean = 1), ncol = 1), matrix(rnorm(n, mean =

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread Paul Miller
Hi Michael and Petr, You both seem to have hit on the idea of splitting the TestData in order to do by group processing. Trouble is that ggplot2 doesn't seem to like lists very much. When I run the code: TempData - split(TestData, TestData$key_line) TempData for(temp in TempData){

Re: [R] Computing High Order Derivatives (Numerically)

2012-03-23 Thread Gildas Mazo
Dear Petr Savicky, this helped indeed. Thank you very much. Gildas - Mail original - De: Petr Savicky savi...@cs.cas.cz À: r-help@r-project.org Envoyé: Vendredi 23 Mars 2012 09:39:37 Objet: Re: [R] Computing High Order Derivatives (Numerically) On Fri, Mar 23, 2012 at 12:35:57AM

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread R. Michael Weylandt
You didn't do what I said. Once you make the list of data.frame()s TempData, each single element is a data.frame and that is what you need to pass to ggplot -- in the loop construct I set up, the individual data frame is called temp so you need to have ggplot(temp). As I said before, ## Do

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread Petr PIKAL
Hi Hi Michael and Petr, You both seem to have hit on the idea of splitting the TestData in order to do by group processing. Trouble is that ggplot2 doesn't seem to like lists very much. When I run the code: TempData - split(TestData, TestData$key_line) TempData for(temp in

[R] [slightly OT] le: will a new point shift the solution question

2012-03-23 Thread Giovanni Azua
Hello, Is there an R function that given a linear regression solution for a data set will answer in the most efficient way whether a new data point shifts the solution or not? or whether the new solution would differ by less than some error. I need this in the context of an iterative method

Re: [R] Remove wireframe outer box but keep ticks

2012-03-23 Thread ilai
See 'box.3d' in trellis.par.get() : wireframe(z ~ x*y, data = test, scales=list(arrows=F), par.settings = list(box.3d = list(col=NA))) Note you can have some finer control: wireframe(z ~ x*y, data = test, scales=list(arrows=F), par.settings = list(box.3d = list(col=c(1,2,NA,NA,3,NA,4,5,6)))

Re: [R] trouble for parsing HTML files

2012-03-23 Thread Julien Velcin
Thank you for your comments Michael, but : i) The website is generating different content for you than for Milan and me [wild guess] It'd be highly surprising. If this is the case, I don't know what I can do to fix it. ii) Something in the OS 10.5 - 10.6 difference [process of

Re: [R] trouble for parsing HTML files

2012-03-23 Thread R. Michael Weylandt
No idea at this point; perhaps get in touch with the maintainer (email given by maintainer(XML)) and see if he has any insights. Sorry I can't get this one for you: without being able to reproduce it (the odd error message with the euro sign) myself, I'm pretty stumped. If you do get to a

Re: [R] calling java from R and using java time series double precision array

2012-03-23 Thread Hurr
2012/3/23 Back again today at trying to learn R. These are the results of a run I made. I understand very little of this. sapply() helps me get the array returned from a method. Strings and doubles returned from a method don't seem to need sapply(). I want to learn how to fetch the constant

Re: [R] Order of terms in formula changes aov() results

2012-03-23 Thread Weidong Gu
Hi, It seems that you have an unbalanced anova case which can be complicated in interpretation. This question has been addressed in the list you can search of previous mails. Basically, for unbalanced data (or unorthorgonal), estimates of SS of a factor depends on other factors. Type I SS (which

[R] Nonparametric bivariate distribution estimation and sampling

2012-03-23 Thread heyi xiao
Dear all, I have a bivariate dataset from a preliminary study. I want to do two things: (1) estimate the probability density of this bivariate distribution using some nonparametric method (kernel, spline etc); (2) sample a big dataset from this bivariate distribution for a simulation study. Is

Re: [R] Nonparametric bivariate distribution estimation and sampling

2012-03-23 Thread Sarah Goslee
R can do all of that and more. But you'll need to put some work in reading about how to use R, about the statistical methods involved, and about how to use them to best effect. You might want, for instance, generalized additive models. Or not. If your question isn't more fully-formed than this,

Re: [R] Order of terms in formula changes aov() results

2012-03-23 Thread David Winsemius
On Mar 22, 2012, at 5:06 PM, Stuart Luppescu wrote: Hello, This one is very perplexing. I have teacher observation data, with factors teacher ID, observer ID, component, grade and subject. When I do this, aov(data=ratings.prin.22, rating ~ obsid.f + tid.f + subject.f + grade.f + comp.f)

[R] call for CSDA special issue

2012-03-23 Thread Achim Zeileis
Dear useRs, it may be of interest to some of you that Computational Statistics Data Analysis (CSDA) is having a special issue on statistical algorithms that are accompanied by corresponding R packages. For details see the call below. Best regards, Z

Re: [R] Nonparametric bivariate distribution estimation and sampling

2012-03-23 Thread heyi xiao
Sarah, Thanks for the response. I actually have several years of working experience with R and statistics, although may not be as good as you. that’s why I am here ;) I dug deeper into R documentations and previous R-help posts, and couldn’t found anything particular help. Again, I want to do

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread Paul Miller
Hi Michael and Petr, Apologize for my failure to grasp what you were saying. My code is up and running now. Noticed what might be a shortcoming of my ggplot code. I have some instances where a drug starts and stops and then starts and stops again. It looks like my graphs show just a single

Re: [R] Nonparametric bivariate distribution estimation and sampling

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 1:53 PM, heyi xiao wrote: Sarah, Thanks for the response. I actually have several years of working experience with R and statistics, although may not be as good as you. that’s why I am here ;) I dug deeper into R documentations and previous R-help posts, and couldn’t

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread R. Michael Weylandt
The ggplot book is quite good, but be forewarned, there have been some structural changes of late and some of the book code won't work quite as is anymore: this document describes them (the changes, not the old code) in some detail if you start hitting those sorts of things:

Re: [R] Plotting patient drug timelines using ggplot2 (or some other means) -- Help!!!

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 2:15 PM, Paul Miller wrote: Hi Michael and Petr, Apologize for my failure to grasp what you were saying. My code is up and running now. Noticed what might be a shortcoming of my ggplot code. I have some instances where a drug starts and stops and then starts and

[R] R conditional matrix operations - advanced condition

2012-03-23 Thread Lukasz Kielpinski
Hello List! I stumbled across an efficiency problem - calculation that would be probably done very fast as a matrix operation I must perform as a for-loop. My intention was to do a conditional operation in matrix depending on the information in first column (summing as many data points from

[R] fdp c

2012-03-23 Thread Heba S
Hello, I am beginner user of R. I am trying to use GeneNet package. I started by the example on this link: http://strimmerlab.org/software/genenet/download/arabidopsis-net.R However I am getting an error at this line:system(fdp -T svg -o arthdyn.svg arthdyn.dot) # SVG format sh: fdp: command

[R] how to convert digits to specified decimal vectors

2012-03-23 Thread sagarnikam123
x [1] 7 8 9 10 11 12 convert such that 7. 8. 9. 10.000 11.000 12.000 total size of 5 digits for each value -- View this message in context: http://r.789695.n4.nabble.com/how-to-convert-digits-to-specified-decimal-vectors-tp4498588p4498588.html Sent from the R help mailing list

[R] FW: fdp and Rgraphviz

2012-03-23 Thread Heba S
Hello, I am beginner user of R. I am trying to use GeneNet package. I started by the example on this link: http://strimmerlab.org/software/genenet/download/arabidopsis-net.R However I am getting an error at this line:system(fdp -T svg -o arthdyn.svg arthdyn.dot) # SVG format sh: fdp:

[R] julian() and numerical noise

2012-03-23 Thread Andreas Eckner
Hi, does anybody know if the following behavior of julian() is intentional? julian(2, 1, 2012) - julian(2 - 1e-15, 1, 2012) [1] 1 julian(2, 1, 2012) - julian(2, 1 - 1e-15, 2012) [1] 0 julian(2, 1, 2012) - julian(2, 1, 2012 - 1e-15) [1] 0 In other words, julian() is subject to

Re: [R] Help with R package forecast

2012-03-23 Thread jason
When I type library() to see what is installed the following list in RED comes up. Packages in library '/home/jason/R/i686-pc-linux-gnu-library/2.13': abind Combine multi-dimensional arrays aplpack Another Plot PACKage: stem.leaf, bagplot,

[R] a question about using function ssanova of package gss in R version 2.14.1 (2011-12-22)

2012-03-23 Thread Chris Wu
Dear all, I am trying to use ssanova of the gss package but met some error that I cannot figure out the answer for. Here is the code I am using to explain the problem. library(gss) set.seed(5732) x=(1:100)/100 y=1+3*sin(2*pi*x)+2*(x0.7)+rnorm(x) x1=rnorm(100) x2=rnorm(100) part.fit=ssanova(y~x,

[R] How to convert factors to numbers

2012-03-23 Thread sandro
Hello, I am relatively new to using R. The text file contains the date and price . I want to read and manipulate the data in R. However, when I use read.table, it treats all of the data as factors and I do not know how to treat the data as numbers:

Re: [R] How to convert factors to numbers

2012-03-23 Thread chuck.01
Using your posed data, the variable price was numeric: data.precios - read.table(http://r.789695.n4.nabble.com/file/n4498828/p_diarios.txt;, header=T) str(data.precios) 'data.frame': 1996 obs. of 2 variables: $ time : int 37988 37991 37993 37994 37995 37998 37999 38000 38001 38002 ... $

Re: [R] Rcmd build -binary -- problem

2012-03-23 Thread Stephen Eick
Nope.  I tried -- too.  I tried many other variations too. Any suggestions? RRcmd build --binary thinc Rcmd build --binary thinc Warning: unknown option '--binary' * checking for file 'thinc/DESCRIPTION' ... OK * preparing 'thinc': * checking DESCRIPTION meta-information ... OK * cleaning src *

[R] How do you scale variables which consist of tokens

2012-03-23 Thread Alekseiy Beloshitskiy
Dear All, Let's suppose there's a case when you want to make a prediction using range of variables. Some variables are represented as set of words (tokens). For example there is a training set: x1,x2,..,x7, y where y - to be predicted (despite of the model to be used for prediction), and let's

[R] how to cluster rows of words in a text file

2012-03-23 Thread mail me
Hi: I am trying to cluster the rows of a text file with kmeans: I load the data as follows file1 - read.csv(somefile.csv) and the file can be viewed having the following line of words file1 1 word1 word3 word4 word1 2 word1 word4 word3 word1 3 word4 word2 word4 word3 4 word4 word2

Re: [R] How to export hexbin tables?

2012-03-23 Thread fco.pch
Michael... It WORKS!!! Finally, the most elegant way was yours: /aux.table - sapply(.) write.table(aux.table, file=hexbin.table.ascii, sep=\t)/ Thanks! hope be useful to R-users! -- View this message in context:

Re: [R] predict () for LDA and GLM

2012-03-23 Thread Uwe Ligges
1. Not reproducible for me (gives an ERROR). 2. Please try to make examples minimal, as the psoting guide suggests. 3. Please follow my advice and provide A correct formula describing the model with separate variables with the data.frame passed to the data argument of the lda() function. That

[R] svycoxph and test statistics

2012-03-23 Thread Chirag Patel
Hello, I have been using the function 'svycoxph' in the Dr. Lumley's survey package (version 3.26) to compute coefficient estimates for Cox regression. I have noticed the p-values output are based on normal distribution (like in coxph); however in svyglm (and in other software, such as Stata or

Re: [R] FW: fdp and Rgraphviz

2012-03-23 Thread Uwe Ligges
1. Why do you ask here rather than the author of thr webpage? 2. Reading the comments suggests you are lacking a graphviz installation that includes the fdp command. Uwe Ligges On 23.03.2012 13:09, Heba S wrote: Hello, I am beginner user of R. I am trying to use GeneNet

[R] Append to files in loop

2012-03-23 Thread Luisin Galindo, PhD
Hi ReXperts, I have a file 'XFile' that I wish to append to the end of file1, file2, file3, file4, and file 5. Can't figure out how to set up the loop. Please help. Thank you, -- Luisin Galindo, PhD Director, Departamento de Medicina Matematica Centro de Estudios Avansados en Simulacion,

Re: [R] Help with R package forecast

2012-03-23 Thread Uwe Ligges
On 23.03.2012 13:47, jason wrote: When I type library() to see what is installed the following list in RED comes up. Packages in library '/home/jason/R/i686-pc-linux-gnu-library/2.13': abind Combine multi-dimensional arrays aplpack Another Plot PACKage:

Re: [R] julian() and numerical noise

2012-03-23 Thread Uwe Ligges
On 23.03.2012 15:45, Andreas Eckner wrote: Hi, does anybody know if the following behavior of julian() is intentional? julian(2, 1, 2012) - julian(2 - 1e-15, 1, 2012) [1] 1 julian(2, 1, 2012) - julian(2, 1 - 1e-15, 2012) [1] 0 julian(2, 1, 2012) - julian(2, 1, 2012 - 1e-15) [1] 0 In

Re: [R] R conditional matrix operations - advanced condition

2012-03-23 Thread Berend Hasselman
On 23-03-2012, at 17:29, Lukasz Kielpinski wrote: Hello List! I stumbled across an efficiency problem - calculation that would be probably done very fast as a matrix operation I must perform as a for-loop. My intention was to do a conditional operation in matrix depending on the

Re: [R] Rcmd build -binary -- problem

2012-03-23 Thread Uwe Ligges
On 23.03.2012 18:43, Stephen Eick wrote: Nope. I tried -- too. I tried many other variations too. Any suggestions? RRcmd build --binary thinc Rcmd build --binary thinc Warning: unknown option '--binary' * checking for file 'thinc/DESCRIPTION' ... OK * preparing 'thinc': * checking

Re: [R] How to convert factors to numbers

2012-03-23 Thread Uwe Ligges
On 23.03.2012 15:31, chuck.01 wrote: Using your posed data, the variable price was numeric: data.precios- read.table(http://r.789695.n4.nabble.com/file/n4498828/p_diarios.txt;, header=T) str(data.precios) 'data.frame': 1996 obs. of 2 variables: $ time : int 37988 37991 37993 37994

Re: [R] Rcmd build -binary -- problem

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 1:43 PM, Stephen Eick wrote: Nope. I tried -- too. I tried many other variations too. Any suggestions? RRcmd build --binary thinc Rcmd build --binary thinc Warning: unknown option '--binary' * checking for file 'thinc/DESCRIPTION' ... OK * preparing 'thinc': *

Re: [R] how to convert digits to specified decimal vectors

2012-03-23 Thread R. Michael Weylandt
format sprintf Michael On Fri, Mar 23, 2012 at 8:16 AM, sagarnikam123 sagarnikam...@gmail.com wrote: x [1] 7 8 9 10 11 12 convert such that 7. 8. 9. 10.000 11.000 12.000 total size of 5 digits for each value -- View this message in context:

Re: [R] How to convert factors to numbers

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 9:38 AM, sandro wrote: Hello, I am relatively new to using R. The text file contains the date and price . I want to read and manipulate the data in R. However, when I use read.table, it treats all of the data as factors and I do not know how to treat the data as

Re: [R] Rcmd build -binary -- problem

2012-03-23 Thread Berend Hasselman
On 23-03-2012, at 18:43, Stephen Eick wrote: . I don't understand your comment about you explicitly asked not to send HTML, as you always were... Is this in regards to using gmail?? No. It means please configure your mail client to send mail in plain text. Please do not send in html

Re: [R] trouble for parsing HTML files

2012-03-23 Thread Milan Bouchet-Valat
Le vendredi 23 mars 2012 à 08:10 +0100, Julien Velcin a écrit : Here it is: R version 2.14.2 (2012-02-29) Platform: i386-apple-darwin9.8.0/i386 (32-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 I guess the OS uses a French locale? Maybe the discrepancy

Re: [R] Append to files in loop

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 2:19 PM, Luisin Galindo, PhD wrote: Hi ReXperts, I have a file 'XFile' In your R workspace or not? Will assume this is an R dataframe. With the same number of columns as the files to be updated? Will assume that the number of columns is the same and that you also want

Re: [R] Help with R package forecast

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 8:47 AM, jason wrote: When I type library() to see what is installed the following list in RED comes up. Packages in library '/home/jason/R/i686-pc-linux-gnu-library/2.13': This suggests you are using an old copy of R. Many time the current repository will only be

[R] Memory limits for MDSplot in randomForest package

2012-03-23 Thread Sam Albers
Hello, I am struggling to produce an MDS plot using the randomForest package with a moderately large data set. My data set has one categorical response variables, 7 predictor variables and just under 19000 observations. That means my proximity matrix is approximately 133000 by 133000 which is

Re: [R] How to write and analyze data with 3 dimensions

2012-03-23 Thread Greg Snow
You could put this data into a 3 dimensional array and then use the apply function to apply a function (such as mean) over which ever variables you choose. Or you could put the data into a data frame in long format where you have your 3 variable indices in 3 columns, then the data in a 4th

Re: [R] Nonparametric bivariate distribution estimation and sampling

2012-03-23 Thread heyi xiao
David, Thanks a lot for the specific suggestions. That’s very helpful. My question 1 is fully answered now. I guess I am not clear enough for my question 2. I would like to generate a random sample using the estimated probability density (as a result of my question 1) as the reference

Re: [R] How to draw table in Latex without using xtable?

2012-03-23 Thread mlell08
I don't know xtable but you could try escaping the backslashes in your strings. cat(\\begin{table}[ht]) etc. Regards! __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] Remove wireframe outer box but keep ticks

2012-03-23 Thread Bigelow, Seth W -FS
ilai/keren: Thanks for your response. It's not the 3d bounding box that I wish to eliminate, but the box that surrounds the whole figure and is drawn automatically (I call this the outer box, in contrast to the inner, 3d bounding box). The ticks attached to the bounding box are connected, in

[R] plot a BARPLOT with sd deviation bar up and down

2012-03-23 Thread gianni lavaredo
dear Researchers, i am looking for a function to plot a barplot for each mean value and the related standard deviation, and i can close my week. This is an example of my data set. really Thanks in advance for any help or suggestions Gianni My.mean -

Re: [R] plot a BARPLOT with sd deviation bar up and down

2012-03-23 Thread mlell08
Hello, I think there's no function in R to print error bars. I once found one in a blog which I'm using. errorbar - function(x, y, upper, lower=upper, length=0.02, vert=TRUE, ...){ if(!doPlot) return() if(length(x) != length(y) | length(y) !=length(lower) | length(lower) != length(upper))

[R] source option

2012-03-23 Thread ivo welch
Dear R experts---has someone written a wrapper for the source function that opens a sink file in the same name as the .R file and closes it at the end (including when there is an error that aborts)? the first part is easy, but I am not sure how to not patch myself an empty sink() after any R

Re: [R] plot a BARPLOT with sd deviation bar up and down

2012-03-23 Thread Sarah Goslee
The discussion here is likely to be helpful: https://stat.ethz.ch/pipermail/r-help/2011-February/269185.html as is: http://www.rseek.org/?cx=010923144343702598753%3Aboaz1reyxd4q=barplot+error+barssa=Search+functions%2C+lists%2C+and+morecof=FORID%3A11siteurl=www.rseek.org%2Fref= Beyond that, it

Re: [R] Memory Utilization on R

2012-03-23 Thread R. Michael Weylandt
Taking a look at your script: there are a some potential optimizations you can do: # Fine poi - as.character(top.GSM396290) #5000 characters x.data - h1[,c(1,7:9)] # 485577 obs of 4 variables # Pre-allocate the space x - vector(list, 485577) # x - list() # Do the a stuff once outside the loop

Re: [R] How to draw table in Latex without using xtable?

2012-03-23 Thread Richard M. Heiberger
You can use xtable() or latex() and then edit the columns names in the generated .tex file. That is a much better plan than reinventing either of those functions. On Thu, Mar 22, 2012 at 3:46 AM, Manish Gupta mandecent.gu...@gmail.comwrote: Hi, I am working on table suing R and Latex. I am

Re: [R] Nonparametric bivariate distribution estimation and sampling

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 3:55 PM, heyi xiao wrote: David, Thanks a lot for the specific suggestions. That’s very helpful. My question 1 is fully answered now. I guess I am not clear enough for my question 2. I would like to generate a random sample using the estimated probability density (as

Re: [R] plot a BARPLOT with sd deviation bar up and down

2012-03-23 Thread peter dalgaard
On Mar 23, 2012, at 21:32 , Sarah Goslee wrote: The discussion here is likely to be helpful: https://stat.ethz.ch/pipermail/r-help/2011-February/269185.html as is:

Re: [R] quantmod getOptionChain Not Work

2012-03-23 Thread R. Michael Weylandt
I just got around to taking a look at this, but below is a fix. It seems like yahoo finance redesigned the page and rather than reparsing all their HTML, I'll use Duncan TL's XML package to make life happier. (I loathe HTML parsing) This isn't thoroughly tested and it'll break if yahoo

Re: [R] How to draw table in Latex without using xtable?

2012-03-23 Thread Duncan Mackay
Hi I have not been following the thread and please excuse the length and width of this - this is a large example of what you can do using xtable and a data.frame the data.frame is copied to xx in the chunck Table6H and reworked in the table itself resulting in a good presentation in a

Re: [R] quantmod getOptionChain Not Work

2012-03-23 Thread R. Michael Weylandt
Sorry about that: two small mistakes and I imagine there are a few more I've missed. This should actually work: ### library(XML) readYahooOptions - function(Symbols, Exp, ...){ parse.expiry - function(x) { if(is.null(x)) return(NULL)

Re: [R] Remove wireframe outer box but keep ticks

2012-03-23 Thread ilai
On Fri, Mar 23, 2012 at 2:07 PM, Bigelow, Seth W -FS sbige...@fs.fed.us wrote: ilai/keren: Thanks for your response. It's not the 3d bounding box that I wish to eliminate, but the box that surrounds the whole figure and is drawn automatically (I call this the outer box, in contrast to the

Re: [R] Remove wireframe outer box but keep ticks

2012-03-23 Thread Bigelow, Seth W -FS
Wow, that worked liked a charm. I will include the entire working example of how to remove the outer box without losing the ticks: test = data.frame(expand.grid(c(1:10), c(1:10))) z = test[,1] + test[,2] test = cbind(test, z) names(test) = c(x, y, z) require(lattice) wireframe(z ~ x*y, data =

[R] Vectorize (scalar) function

2012-03-23 Thread casperyc
Hi all, myint=function(mu,sigma){ integrate(function(x) dnorm(x,mu,sigma)/(1+exp(-x)),-Inf,Inf)$value } x=seq(0,50,length=3000) x=x[-1] plot(x,myint(4,x)) # not working yet I think I have to 'Vectorize' it somehow? What's a scalar function? and a primitive function? Thanks. casper

[R] GDType information

2012-03-23 Thread julio cesar oliveira
Hi, I used GDALinfo(MOD13Q1.A2001049.h13v11.005.2007002215512.250m_16_days_EVI.tif) and got the results: rows10 columns 11 bands 1 origin.x150701.4 origin.y7744897 res.x 250 res.y 250 ysign -1 oblique.x 0 oblique.y 0 driver GTiff

[R] Fwd: The StructTS method

2012-03-23 Thread Fretheim, Alexander H
To whomever it may concern, I'm a young Industrial Engineer working on Senior Design at Georgia Tech and have found the StructTS method to be excellent for the training set for my forecasting project. There's only one problem: I don't actually understand what a Structural Time Series

[R] show and produce PDF file with pdf() and dev.off( ) in function

2012-03-23 Thread casperyc
Hi all, I know how to use pdf() and dev.off() to produce and save a graph. However, when I put them in a function say myplot(x=1:20){ pdf(xplot.pdf) plot(x) dev.off() } the function work. But is there a way show the graph in R as well as saving it to the workspace? Thanks. casper

[R] Using MuMIn - error message

2012-03-23 Thread Dragonwalker
Hello, I hope that you can bare with me. I am new to models, but I think I have a pretty godd understanding of how to run them now, including how to use AICc and Anova. The issue is that I have many factors that I wish to compare so doing each one at a time would take forever. I came across the

Re: [R] How to convert factors to numbers

2012-03-23 Thread Natasha Stavros
As.numeric(as.character(factor.level.to.convert)) On Mar 23, 2012 11:40 AM, sandro sonav...@gmail.com wrote: Hello, I am relatively new to using R. The text file contains the date and price . I want to read and manipulate the data in R. However, when I use read.table, it treats all of the

[R] Please sponsor me

2012-03-23 Thread JustGiving
Hello I'm raising money for Breast Cancer Care and I'd really appreciate your support. It's easy to donate online with a credit or debit card - just go to my JustGiving page: http://www.justgiving.com/Veronica-John JustGiving sends your donation straight to Breast Cancer Care and

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