[R] Factored ARMA models

2013-09-20 Thread Indrajit Sengupta
I am trying to replicate ARIMA models in R from SAS. Specifically - Factored ARMA models, which I can do very easily in SAS ( http://v8doc.sas.com/sashtml/ets/chap7/sect11.htm). I would like to know if there is a way to do this in any of the R packages. Thanks in advance, Indrajit

Re: [R] Factored ARMA models

2013-09-20 Thread Pascal Oettli
Hello, Please have a look at: http://cran.r-project.org/web/views/TimeSeries.html Regards, Pascal 2013/9/20 Indrajit Sengupta indrajitsg2...@gmail.com I am trying to replicate ARIMA models in R from SAS. Specifically - Factored ARMA models, which I can do very easily in SAS (

Re: [R] R-3.0.1 g77 errors

2013-09-20 Thread Prof Brian Ripley
On 19/09/2013 15:28, Prigot, Jonathan wrote: Sadly, I am limited to the Solaris 10 system. I wish that I could use Linux, the world uses it. What does that have to do with this? The CRAN check farm uses gfortran 4.8 on a Solaris 10 system. g77 is not the native compiler there, nor is that

[R] [R-pkgs] depmixS4 version 1.3-0 on CRAN

2013-09-20 Thread Ingmar Visser
Package news (see below for general description of functionality) depmixS4 version 1.3-0 has been released on CRAN. See the NEWS file for an overview of all changes. The most important user-visible changes are: 1) more compact pretty-printing of parameters in print/summary of (dep)mix objects

Re: [R] Need help to find out the name of my columns and rows in a data file

2013-09-20 Thread PIKAL Petr
Hi -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of David Winsemius Sent: Friday, September 20, 2013 6:39 AM To: ivanc010 Cc: r-help@r-project.org Subject: Re: [R] Need help to find out the name of my columns and rows in a

Re: [R] Hope u have some time for 2 more questions

2013-09-20 Thread Simon Zehnder
Hi, as far as I know, there is no limitation on data size in regard to foreach. You should reserve though enough memory for your application on the cluster (via ulimit -s unlimited and ulimit -v unlimited). Furthermore I would check the following: Check if there are two versions of R on the

[R] Subcripting matrix

2013-09-20 Thread Christofer Bogaso
Hello again, I have one question on subscripting matrix. Let say I have following matrix: Mat - matrix(1:9, 3) colnames(Mat) - c(a, b, a) Mat a b a [1,] 1 4 7 [2,] 2 5 8 [3,] 3 6 9 Now I want to fetch data for colnames 'a'.I did following: Mat[, a] [1] 1 2 3 However it is not

Re: [R] Subcripting matrix

2013-09-20 Thread Berend Hasselman
On 20-09-2013, at 12:52, Christofer Bogaso bogaso.christo...@gmail.com wrote: Hello again, I have one question on subscripting matrix. Let say I have following matrix: Mat - matrix(1:9, 3) colnames(Mat) - c(a, b, a) Mat a b a [1,] 1 4 7 [2,] 2 5 8 [3,] 3 6 9 Now I want to

Re: [R] Subcripting matrix

2013-09-20 Thread Olivier Crouzet
Hi, it seems the following works as needed... Mat[,colnames(Mat)==a] Olivier. On Fri, 20 Sep 2013 16:22:37 +0530 Christofer Bogaso bogaso.christo...@gmail.com wrote: Hello again, I have one question on subscripting matrix. Let say I have following matrix: Mat - matrix(1:9, 3)

Re: [R] Factored ARMA models

2013-09-20 Thread Indrajit Sengupta
Can you point to any function in specific? On Fri, Sep 20, 2013 at 12:10 PM, Pascal Oettli kri...@ymail.com wrote: Hello, Please have a look at: http://cran.r-project.org/web/views/TimeSeries.html Regards, Pascal 2013/9/20 Indrajit Sengupta indrajitsg2...@gmail.com I am trying to

Re: [R] binary symmetric matrix combination

2013-09-20 Thread arun
Hi Elio, Try this: library(stringr) lines1-str_trim(gsub(\t, ,readLines(elio.txt)))  lst1-lapply(split(lines1,cumsum(lines1==)),function(x) x[x!=]) lst2- lapply(lst1[lapply(lst1,length)0],function(x) as.matrix(read.table(text=x,row.names=1))) names(lst2)- paste0(m,seq_along(lst2)) dat-

Re: [R] Averate memory usage trend

2013-09-20 Thread mohan . radhakrishnan
Replying with some code. input- readLines(textConnection( 6.2 httpd (18) 4.0 httpd (11) 4.0 httpd (11) 3.3 httpd (9) 4.2 httpd (12) 4.2httpd (12) 4.2 httpd (12) 4.2 httpd (12) 4.2 httpd (12) )) data-input[input!=] data [1] 6.2 httpd (18) 4.0

Re: [R] Averate memory usage trend

2013-09-20 Thread arun
library(stringr) read.table(text=gsub([()],,str_trim(input[input!=])),sep=,header=FALSE,stringsAsFactors=FALSE) #   V1    V2 V3 #1 6.2 httpd 18 #2 4.0 httpd 11 #3 4.0 httpd 11 #4 3.3 httpd  9 #5 4.2 httpd 12 #6 4.2 httpd 12 #7 4.2 httpd 12 #8 4.2 httpd 12 #9 4.2 httpd 12 A.K. - Original

[R] Renaming variables

2013-09-20 Thread Preetam Pal
Hi, I guess this is pretty basic. I have 25 variables in the data file (name: score), i.e. X1,X2,.,X25. I dont want to use score$X1, score$X2 everytime I use these variables. Is there a way I can rename all these variables as simply X1,X2,.X25 without writing 25 lines of code, one

Re: [R] Need help to find out the name of my columns and rows in a data file

2013-09-20 Thread Clint Bowman
You are close--think names, not titles, as in rownames or colnames (no reason to completely spell out column). Summary already gave you the column names, so type ?rownames to learn more. Clint BowmanINTERNET: cl...@ecy.wa.gov Air Quality Modeler INTERNET:

Re: [R] Renaming variables

2013-09-20 Thread Simon Zehnder
You haven't said yet, what object your 'data file' is. If you mean a data.frame I would use colnames(dataName) - c(Col1Name, col2Name, ….) Best Simon On Sep 20, 2013, at 4:10 PM, Preetam Pal lordpree...@gmail.com wrote: Hi, I guess this is pretty basic. I have 25 variables in the data

[R] Clustering of data set documentation files in package description

2013-09-20 Thread Thiem Alrik
Dear R help list, I was just wondering whether there is a way to cluster the documentation files of data sets in the package documentation index file, so that common prefixes such as dat... are not necessary. Best wishes, Alrik Dr.

Re: [R] Renaming variables

2013-09-20 Thread Aaron Mackey
On Fri, Sep 20, 2013 at 10:10 AM, Preetam Pal lordpree...@gmail.com wrote: I have 25 variables in the data file (name: score), i.e. X1,X2,.,X25. I dont want to use score$X1, score$X2 everytime I use these variables. attach(score) plot(X1, X2) # etc. etc. -Aaron [[alternative

Re: [R] Creating dummy vars with contrasts - why does the returned identity matrix contain all levels (and not n-1 levels) ?

2013-09-20 Thread David Winsemius
On Sep 13, 2013, at 11:21 PM, E Joffe wrote: Hi David, First I ordered the levels of each factor in a descending order based on frequency. Then, I used the following code to generate a matrix from the dataframe with dummy variables and subsequently run the glmnet (coxnet) ## tranform

Re: [R] Renaming variables

2013-09-20 Thread Clint Bowman
or with(score.plot(X1, X2)) Clint BowmanINTERNET: cl...@ecy.wa.gov Air Quality Modeler INTERNET: cl...@math.utah.edu Department of Ecology VOICE: (360) 407-6815 PO Box 47600FAX:(360) 407-7534 Olympia,

[R] Is there a way to change x and y axis tick mark inside plot()?

2013-09-20 Thread C W
Dear R community, I am having trouble changing the tick marks on y-axis to every 5 units? I have the following: x - c(12, 16, 6, 23, 27, 8, 5, 19, 23, 13, 16, 8) y - c(29, 29, 23, 34, 38, 24, 22, 34, 36, 27, 33, 27) plot(x, y, pch=19) Should I change ylim=c(0,40), and then use axis()? I kept

[R] Rmpfr question

2013-09-20 Thread Michel
Hello everyone, R beginner, I am confronted with the need to use Rmpf. In my first scripts I made use of X=read.table(file.choose(), header=FALSE, sep=,,dec=.) X=as.matrix(X) to load into a matrix data from file before matrix use. How can I do to load the same data in a mpfrMatrix. Is it

[R] time zones from longitude, latitude, and date

2013-09-20 Thread carlisle thacker
I have data that provide longitude, latitude, and local date and time but no information about the corresponding time zone. How to identify the time zone so they can be converted to a common date/time? Thanks, Carlisle [[alternative HTML version deleted]]

[R] Access of odfWeave function to variables that are defined inside a function

2013-09-20 Thread sahar_nokc
Hi everyone! I have now been using odfWeave() for a while in order to make some word document reports of my data. I have encountered a problem when I try to organize my program script into some functions. It seems that if I use the odfWeave() within a function, then odfWeave() is not able to

Re: [R] gam and optim

2013-09-20 Thread Greg Dropkin
please ignore this, I see the error. greg hi probably a silly mistake, but I expected gam to minimise the penalised deviance. thanks greg set.seed(1) library(mgcv) x-runif(100) lp-exp(-2*x)*sin(8*x) y-rpois(100,exp(lp)) plot(x,y) m1-gam(y~s(x),poisson)

[R] gam and optim

2013-09-20 Thread Greg Dropkin
hi probably a silly mistake, but I expected gam to minimise the penalised deviance. thanks greg set.seed(1) library(mgcv) x-runif(100) lp-exp(-2*x)*sin(8*x) y-rpois(100,exp(lp)) plot(x,y) m1-gam(y~s(x),poisson) points(x,exp(lp),pch=16,col=green3) points(x,fitted(m1),pch=16,cex=0.5,col=blue)

Re: [R] Is there a way to change x and y axis tick mark inside plot()?

2013-09-20 Thread Duncan Murdoch
On 20/09/2013 11:52 AM, C W wrote: Dear R community, I am having trouble changing the tick marks on y-axis to every 5 units? I have the following: x - c(12, 16, 6, 23, 27, 8, 5, 19, 23, 13, 16, 8) y - c(29, 29, 23, 34, 38, 24, 22, 34, 36, 27, 33, 27) plot(x, y, pch=19) Should I change

[R] Best way to specify a mixed ANCOVA in R?

2013-09-20 Thread Danielle Smith
I initially posted this question to one of the StackExchange sites, and they suggested that I repost my problem here. After using ezANOVA as my primary way of specifying mixed ANOVAs, I've hit a stumbling block when it come to adding a covariate to the model. I am using an ANCOVA in order to

[R] saving as TIFF - problem with compression

2013-09-20 Thread Anna Zakrisson Braeunlich
Hi, I am struggling to save my figures as TIFF files (yes, the yournal only accept TIFF and not any other format). I can manage to save a simple plot as TIFF at the correct dpi (I need at least 600dpi) and compression works. Only not for my own plot. Everything looks distorted. I have read

Re: [R] Compare two subsequent rows based on specific values of a string

2013-09-20 Thread arun
Hi, May be this helps: dat1- read.table(text=x1    x2    x3   x4  1 xz   ab    cd    ef 2 ab   fz    cd    ef 3 ab   cd   dy    dx,sep=,header=TRUE,stringsAsFactors=FALSE) dat1$changes_to_row_above- sapply(seq_len(nrow(dat1)),function(i) {x1-dat1[,i]%in% dat1[,i-1];if(any(x1))

[R] Comparing two GAMs using anova (mgcv)

2013-09-20 Thread Lucas Holland
Hey all, I've fitted two GAMs to some data using mgcv. The only difference between the two models is that one includes an additional smooth term (the smooth terms are s(x), s(y) and s(log(y)), the difference being that one model contains s(y) as additional term whereas the other one only

Re: [R] time zones from longitude, latitude, and date

2013-09-20 Thread Jeff Newmiller
If you make no further assumptions then this question is not solvable. For example we use standard time in our data collection systems even though legal time here applies daylight savings offset in the summer. In some cases I have seen data collected from sites in multiple time zones recorded

Re: [R] Is there a way to change x and y axis tick mark inside plot()?

2013-09-20 Thread Marc Schwartz
On Sep 20, 2013, at 11:17 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 20/09/2013 11:52 AM, C W wrote: Dear R community, I am having trouble changing the tick marks on y-axis to every 5 units? I have the following: x - c(12, 16, 6, 23, 27, 8, 5, 19, 23, 13, 16, 8) y - c(29,

Re: [R] Compare two subsequent rows based on specific values of a string

2013-09-20 Thread Michel
Thanks I'm lookin for yur example -Message d'origine- De : r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] De la part de arun Envoyé : vendredi 20 septembre 2013 18:11 À : R help Objet : Re: [R] Compare two subsequent rows based on specific values of a string Hi, May

[R] SPATIO-TEMPORAL ANALYSIS AND BIG DATA PROCESSING USING FREE AND OPEN SOURCE SW

2013-09-20 Thread Giuseppe Amatulli
HI, we are pleased to announce 2 weeks intensive training in: *SPATIO-TEMPORAL ANALYSIS AND BIG DATA PROCESSING USING FREE AND OPEN SOURCE SOFTWARE* 16-20 December 2013 20-24 January 2014 University of Twente - Enschede - The Netherlands 4 ECTS Over the few decades there has been an

Re: [R] time zones from longitude, latitude, and date

2013-09-20 Thread David Winsemius
On Sep 20, 2013, at 8:02 AM, carlisle thacker wrote: I have data that provide longitude, latitude, and local date and time but no information about the corresponding time zone. How to identify the time zone so they can be converted to a common date/time? Perhaps as an approximation you

Re: [R] saving as TIFF - problem with compression

2013-09-20 Thread Ranjan Maitra
Hi, Are you using Linux? If so, you may use ImageMagick and try your luck using convert filename.whatever.format filename.tiff There are lots of options in ImageMagick. (Read the manual.) I have done this in the past, and it has worked. However, your exact situation may be different, so

Re: [R] Is there a way to change x and y axis tick mark inside plot()?

2013-09-20 Thread C W
Thanks Duncan. I have no knowledge of SAS, though many in industry use it. I hope R would expand its usage to more at the industry level. Mike On Fri, Sep 20, 2013 at 12:17 PM, Duncan Murdoch murdoch.dun...@gmail.comwrote: On 20/09/2013 11:52 AM, C W wrote: Dear R community, I am having

[R] search species with all absence in a presence-absence matrix

2013-09-20 Thread Elaine Kuo
Dear list I have a matrix composed of islandID as rows and speciesID as columns. IslandID: Island A, B, C….O (15 islands in total) SpeciesID: D0001, D0002, D0003….D0100 (100 species in total) The cell of the matrix describes presence (1) or absence (0) of the species in an island. Now I

Re: [R] search species with all absence in a presence-absence matrix

2013-09-20 Thread John Kane
Once you learn to use dput() I am sure someone will be happy to help you. http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example John Kane Kingston ON Canada -Original Message- From: elaine.kuo...@gmail.com Sent: Sat, 21 Sep 2013 07:14:38 +0800 To:

Re: [R] Renaming variables

2013-09-20 Thread John Kane
Depending on what your doing perhaps with() could help? Or assuming a data.frame or matrix, score[ , 25] will give you Score$X25 If you would supply a bit more information (and code) about what you are doing we probably can help more. John Kane Kingston ON Canada -Original Message-

Re: [R] search species with all absence in a presence-absence matrix

2013-09-20 Thread arun
Hi, Try this:  set.seed(248)  lst1- lapply(1:1000,function(i) matrix( sample(0:1,15*100,replace=TRUE),ncol=100,dimnames=list(paste(Island,LETTERS[1:15]),   paste0(D,sprintf(%04d,1:100)  lst2-lst1[sapply(lst1,function(x) any(colSums(x)==0))] ##The above steps are just to create some matrices

[R] Grouping variables by a irregular time interval

2013-09-20 Thread Raoni Rodrigues
Hello all, I´m have a very large data frame (more than 5 million lines) as below (dput example at the end of mail): Station Antenna TagDateTime Power Events 1 1 2 999 22/07/2013 11:00:2117 1 2 1 2 999 22/07/2013 11:33:4731 1 3 1 2