[R] GAM using penalized regression splines with 4 degress o.f.

2014-02-19 Thread Katharina Mersmann
Dear R-Users, I am fairly new to R and got in trouble by understanding how to run a GAM using penalized regression splines with 4 degress of freedom (even by reading the R Documentation). I tried the following: gamreg1.2-gam(num_FCRlong ~ s(GDP,df=4)+s(cupol_GDPpCapita,df=4) +

[R] R multiplot problem

2014-02-19 Thread catalin roibu
Dear R users, I have a problem in R plot. I want to plot a multipanel chart (eg 4 subplots like in the following code), but I want to remove the line of the first 3 x axis, without break the multipanel box. Is there a possibility to succeed? Thank you very much! #Generate the data for the four

Re: [R] R multiplot problem

2014-02-19 Thread S Ellison
-Original Message- I have a problem in R plot. I want to plot a multipanel chart (eg 4 subplots like in the following code), but I want to remove the line of the first 3 x axis, without break the multipanel box. Is there a possibility to succeed? You could specify axes=FALSE (see

[R] how should the program looks like?

2014-02-19 Thread Ragia Ibrahim
Hi, I used to write C++ code. write what i want in a function ..pass pointers if i want to change the object real value... here i want to ask in R, igraphshould i write the script as lines without functions..to change graph attributes or edges attributes or some values of the

[R] i need a help users

2014-02-19 Thread Amaleswara Rao
what is randomForest Model and package Discription plz. Regards, Amaleswara Rao.Rajulapati ___ Amaleswara Rao.Rajulapati Analyst Nuevora Outthink. Outperform www.nuevora.com [[alternative HTML version deleted]]

Re: [R] GAM using penalized regression splines with 4 degress o.f.

2014-02-19 Thread Collin Lynch
Hi Katharina, what gam package are you using? With mgcv you can inspect the results of the output variables to check whether the fixed field is true which would indicate whether the df is fixed or floating. I'm not sure if this is applicable to what you want. My rough translation of your German

[R] princomp/prcomp packages not available for 3.0.2

2014-02-19 Thread Rich Shepard
Running 3.0.2 on Slackware here. Tried to install.packages() for both princomp and prcomp (Principal Components Analysis) but R responded by telling me neither is available for this version of R. Has anyone an idea when either (but especially prcomp) might be available? TIA, Rich --

[R] multiplot contour

2014-02-19 Thread catalin roibu
Dear R users, I have a multiplot graph in R (in the following code), but I don't know how to make (draw ) a contour line for entire multipanel. Please help me to solve this problem. Thank you very much! #Generate the data for the four graphs x - seq(1, 50, 1) y1 - 10*rnorm(50) y2 -

Re: [R] interaction.plot for continuous variables

2014-02-19 Thread Greg Snow
The Predict.Plot function in the TeachingDemos package (and the related TkPredict function in the same package) are one option for creating plots to show interactions and non-linear relationships with continuous (and mix of continuous and factor variables). On Sun, Feb 16, 2014 at 6:34 AM, carol

Re: [R] princomp/prcomp packages not available for 3.0.2

2014-02-19 Thread ONKELINX, Thierry
Both are functions (not packages) and available in the stats package. ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie Kwaliteitszorg / team Biometrics Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium + 32 2 525 02

Re: [R] princomp/prcomp packages not available for 3.0.2

2014-02-19 Thread David Carlson
Both functions (not packages) are included in package stats which is part of the standard R installation. Have you tried? ?prcomp ?princomp - David L Carlson Department of Anthropology Texas AM University College Station, TX 77840-4352 -Original

Re: [R] princomp/prcomp packages not available for 3.0.2 [RESOLVED]

2014-02-19 Thread Rich Shepard
On Wed, 19 Feb 2014, ONKELINX, Thierry wrote: Both are functions (not packages) and available in the stats package. Thierry, Thank you. I saw it referenced as a package in my Web search. Rich -- Richard B. Shepard, Ph.D. | Have knowledge, will travel. Applied Ecosystem

Re: [R] interaction.plot for continuous variables

2014-02-19 Thread Scherber, Christoph
you can also use equal.count() from lattice to split up your continuous variables, then enter them as conditioning variables eg in xyplot() Von: r-help-boun...@r-project.org [r-help-boun...@r-project.org]quot; im Auftrag von quot;Greg Snow

Re: [R] association of multiple variables

2014-02-19 Thread Michael Friendly
Below is a somewhat more general version of David's function, which allows a choice of the association statistic from vcd::assocstats(). Of course, only Cramer's V is calculated on a scale of 0-1 for an absolute-value measure of strength of association, but this could be accommodated by scaling

Re: [R] Subset for plot in R

2014-02-19 Thread Greg Snow
So are the names of the columns in the dataset x, y, and z? or are they area, concentration, and year? you seem to be mixing these together? If you provide a minimal reproducible example (provide some data with dput, or the commands to generate random data, or use a built in dataset) then it

[R] Generalizing a regex for retrieving numbers with and without scientific notation

2014-02-19 Thread Morway, Eric
I'm trying to extract all of the values from edm in the example below. However, the first attempt only retrieves the final number in the sequence since it is recorded using scientific notation. The second attempt retrieves all of the numbers, but omits the scientific notation component of the

Re: [R] Generalizing a regex for retrieving numbers with and without scientific notation

2014-02-19 Thread Marc Schwartz
On Feb 19, 2014, at 12:26 PM, Morway, Eric emor...@usgs.gov wrote: I'm trying to extract all of the values from edm in the example below. However, the first attempt only retrieves the final number in the sequence since it is recorded using scientific notation. The second attempt retrieves

[R] Change data format query

2014-02-19 Thread drruddy gmail
# Data manipulation problem # Please my Git repo at https://github.com/markruddy/RAD.git Running RStudio 0.97.248 The dataset RYA13Report_transect_AB.csv is in a sort of 'longform' at the moment. Which I would like to change so that: 1. Each Pack_Name is a column 2. Each BH_Name is a row 3.

Re: [R] princomp/prcomp packages not available for 3.0.2

2014-02-19 Thread Keith Jewell
On 19/02/2014 15:47, Rich Shepard wrote: Running 3.0.2 on Slackware here. Tried to install.packages() for both princomp and prcomp (Principal Components Analysis) but R responded by telling me neither is available for this version of R. Has anyone an idea when either (but especially

Re: [R] Change data format query

2014-02-19 Thread Bert Gunter
Just wanted to suggest that you check out the reshape2 package. A lot of folks have complained that R's base reshape() command is rather opaque, and Hadley Wickham wrote his package to facilitate this sort of thing. Cheers, Bert Bert Gunter Genentech Nonclinical Biostatistics (650) 467-7374

[R] dependent column(s) in data frame

2014-02-19 Thread PQuery
Dear all, I have a data frame with a status column and some condition columns. (a dput of part of it is listed below). I would like to know if: 1) There are more chances to have a status of 1 when more than one conditions have the value of 1 ? 2) The status column is depending on any one or

Re: [R] Change data format query

2014-02-19 Thread drruddy gmail
Hi Bert, yes I have reshape2. Apols for not being more precise. Spent over an hour with reshape2 and web examples but I'm stuck. cheers Mark On 19 February 2014 at 19:19:22, Bert Gunter (gunter.ber...@gene.com) wrote: Just wanted to suggest that you check out the reshape2 package. A lot of

Re: [R] scatterplot of two y's

2014-02-19 Thread MacQueen, Don
The quickest way, using the example data, would be matplot( df$x, df[,-1]) Obviously doesn't have the nice ggplot style, but it does do what was requested. And depending on the context and ultimate goal, may be sufficient. Simple improvements are easy: matplot( df$x, df[,-1],

Re: [R] Change data format query

2014-02-19 Thread Hadley Wickham
You might want to try reading http://vita.had.co.nz/papers/tidy-data.html, which lays out the principles by which you might want to organise your data, matching each task with the appropriate reshape2 function. Hadley On Wed, Feb 19, 2014 at 9:18 AM, drruddy gmail drmarkru...@gmail.com wrote:

Re: [R] Change data format query

2014-02-19 Thread drruddy gmail
Thanks for the link Hadley.  On 19 February 2014 at 19:53:31, Hadley Wickham (h.wick...@gmail.com) wrote: You might want to try reading http://vita.had.co.nz/papers/tidy-data.html, which lays out the principles by which you might want to organise your data, matching each task with the

[R] Package development: overriding a function from one package with a function from another?

2014-02-19 Thread Tal Galili
Dear R users, I am currently working on developing two packages, below is a simplified version of my problem: In package A I have some functions (say sum_twice), and I it calls to another function inside the package (say slow_sum). However, in package B, I wrote another function (say fast_sum),

Re: [R] Change data format query

2014-02-19 Thread Law, Jason
library(reshape2) data.melt - melt(data, id.vars = c('BH_ID', 'BH_Name', 'Pack_Name')) dcast(dm, BH_Name ~ Pack_Name) -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of drruddy gmail Sent: Wednesday, February 19, 2014 7:18 AM To:

[R] ISwR Plotting Issue

2014-02-19 Thread Rich Shepard
I'm trying to replicate the linear regression plot on pages 112-113 in Peter Dalgaard's Introductory Statistics with R and getting the error that plot.new has not been called yet. A Web search on that error offered suggestions to run plot.new() or x11(), but all those do is put up an empty

Re: [R] ISwR Plotting Issue [RESOLVED]

2014-02-19 Thread Rich Shepard
On Wed, 19 Feb 2014, Rich Shepard wrote: What have I missed here? Answer: keeping the plot window open when issuing the abline() command. Rich __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the

Re: [R] ISwR Plotting Issue

2014-02-19 Thread Daniel Nordlund
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Rich Shepard Sent: Wednesday, February 19, 2014 4:05 PM To: r-help@r-project.org Subject: [R] ISwR Plotting Issue I'm trying to replicate the linear regression plot on pages

Re: [R] Mapping two data files

2014-02-19 Thread arun
Hi Farnoosh, Try: library(plyr) res - join(`DATA-A`,`DATA-B`,by=Var1,type=right)[,c(3,1:2,4)]  head(res) #  ID   Var1   Var2 var3 #1  1 AETNA CARDINAL CARE TIER 2   NA   10 #2  2  AETNA EPO Group1  110 #3  3 BLUE CARD INTE Group1    2 #4  4 

Re: [R] i need a help users

2014-02-19 Thread David Winsemius
On Feb 19, 2014, at 4:03 AM, Amaleswara Rao wrote: what is randomForest Model and package Discription plz. You done what sort of searching, plz Regards, Amaleswara Rao.Rajulapati ___ Amaleswara Rao.Rajulapati Analyst Nuevora

[R] data

2014-02-19 Thread IZHAK shabsogh
please, how can i generate ten different estimated parameter with multiple y, response from the following response. true.slope-5 true.err.var-3.7 n.iter-100 s.sample-10 estimates-matrix(NA,nrow=n.iter,ncol=2)    list-list() s.sample-10 x-10*runif(s.sample)    for(i in 1:n.iter) { +