[R] Predicting Smooths of Vectors in MGCV

2015-01-21 Thread Nick Jacobson
Hi everyone, I am trying to obtain predictions from a smooth of vectors. I have successfully modeled the smooth vectors, using the following: test=gam(outcome~s(matb,by=mat,k=4)) summary(test) plot(test) Both matb and mat are matrices, each containing 7 columns. I am unsure of how to set up

Re: [R] Need help with BIG Data

2015-01-21 Thread Greg Snow
There is a section in the High-Performance Computing (HPC) CRAN Task View on Large memory and out-of-memory data ( http://cran.r-project.org/web/views/HighPerformanceComputing.html) that should probably be the first place to start. On Wed, Jan 21, 2015 at 8:18 AM, Paromita Guha parog...@gmail.com

[R] Error in MCMCpack in fitting a 2PL-IRT-model with independent priors on the item-parameters

2015-01-21 Thread Tobias Konitzer
I am trying to run a simple one-dimensional Bayesian IRT-model on a 9 (respondents)*43(items) dataset, but I want to specify separate normal priors for my item-parameters. With sample data, I run data(SupremeCourt) priors-matrix(NA,ncol=43,nrow=2) priors[1,]-0 priors[2,]-seq(1,43,1) posterior3 -

[R] Error in data.frame

2015-01-21 Thread John Wasige
Hi, Kindly help me out on this error from running SPI package. I am trying to run SPI package with 30 years rainfall data but I get this error: Error in data.frame(dates = dates, spi.plot[, 1:ncolumn]) : arguments imply differing number of rows: 30, 52559 script require(raster)

Re: [R] Neural Network

2015-01-21 Thread Charles Determan Jr
Javad, You question is a little too broad to be answered definitively. Also, this is not a code writing service. You should make a meaningful attempt and we are here to help when you get stuck. 1. If you want to know if you can do neural nets, the answer is yes. The three packages most

[R] [help] reduce the bit depth of a png file

2015-01-21 Thread Vera Thiemig
Dear all, I would like to reduce the bit depth of a png file from originally 24 to 8 (with the main intention to decrease the file size). With the ordinary png(.) command it seems to be not possible. So, I created first the png file and then re-wrote it with writePNG of the png package

[R] Need help with BIG Data

2015-01-21 Thread Paromita Guha
Hi all, I have a dataset with more than 16800 rows and 2000 columns. I have been trying to run some econometric estimation and regressions as well as some statistical procedures on the dataset and R keeps giving me errors. I tried attaching the data and I was unable to do so. Could anyone

[R] Error in data.frame

2015-01-21 Thread John Wasige
Hi, Kindly help me out on this error from running SPI package. I am trying to run SPI package with 30 years rainfall data but I get this error: Error in data.frame(dates = dates, spi.plot[, 1:ncolumn]) : arguments imply differing number of rows: 30, 52559 script require(raster)

[R] Correction: Regression Modeling Strategies 4-Day Short Course March 2015

2015-01-21 Thread Frank Harrell
*RMS Short Course 2015* Frank E. Harrell, Jr., Ph.D., Professor and Chair Department of Biostatistics, Vanderbilt University School of Medicine *March 3, 4, 5 6, 2015* With Optional R Workshop March 2 9:00am - 4:00pm Student Life Center Board of Trust Room Vanderbilt University Nashville

[R] need help with excel data

2015-01-21 Thread Dr Polanski
Hi all! Sorry to bother you, I am trying to learn some R via coursera courses and other internet sources yet haven’t managed to go far And now I need to do some, I hope, not too difficult things, which I think R can do, yet have no idea how to make it do so I have a big set of data

Re: [R] Need help with BIG Data

2015-01-21 Thread Nordlund, Dan (DSHS/RDA)
-Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Paromita Guha Sent: Wednesday, January 21, 2015 7:19 AM To: r-help@r-project.org Subject: [R] Need help with BIG Data Hi all, I have a dataset with more than 16800 rows and 2000 columns. I have

Re: [R] [help] reduce the bit depth of a png file

2015-01-21 Thread Sarah Goslee
Does it have to be pure R? Imagemagick provides command-line tools to do that, and can be called from within R using system(). Sarah On Wednesday, January 21, 2015, Vera Thiemig vera.thie...@ext.jrc.ec.europa.eu wrote: Dear all, I would like to reduce the bit depth of a png file from

Re: [R] need help with excel data

2015-01-21 Thread Collin Lynch
Dr. Polanski, I would recommend something else. Given the messy nature of your data I would suggest using a language like Python or Perl to extract it to an appropriate format. Python has good regular expression support and unicode support. If you can save your data as a csv file or even text

Re: [R] Need help with BIG Data

2015-01-21 Thread Duncan Murdoch
On 21/01/2015 10:18 AM, Paromita Guha wrote: Hi all, I have a dataset with more than 16800 rows and 2000 columns. I have been trying to run some econometric estimation and regressions as well as some statistical procedures on the dataset and R keeps giving me errors. That's only 33 million

[R] Re-order levels of a categorical (factor) variable

2015-01-21 Thread Ravi Varadhan
Hi, I have a fairly elementary problem that I am unable to figure out. I have a continuous variable, Y, repeatedly measured at multiple times, T. The variable T is however is coded as a factor variable having these levels: c(Presurgery, Day 30, Day 60, Day 180, Day 365). When I plot the

Re: [R] need help with excel data

2015-01-21 Thread Jeff Newmiller
I think R is quite capable of doing this. You would have to learn a comparable number of fiddly bits to accomplish this in R, Python or Perl. That is not to say that learning Perl or Python is a bad idea... but in terms of shortest path I think they are of comparable complexity. All three

Re: [R] Re-order levels of a categorical (factor) variable

2015-01-21 Thread William Dunlap
Are you sure the factors of T are in the order you think they are? (Are you sure you are using the expected version of T.) Use print(levels(T)) to make sure. I tried timeCats - c(Presurgery, Day 30, Day 60, Day 180, Day 365) d - data.frame(T = factor(rep(timeCats, 11:15),

Re: [R] need help with excel data

2015-01-21 Thread Matthew
Try asap utilities (Home and Student edition), http://www.asap-utilities.com/index.php. When installed it will look like this in Excel, Select Columns Rows and then #18. If that is not helpful, then DigDB, http://www.digdb.com/, but this one requires a subscription. It will also split

Re: [R] Error in data.frame

2015-01-21 Thread MacQueen, Don
Since neither of the objects named in the error message, dates and spi.plot, show up in your script, it's pretty much impossible to guess. You will probably find that if you do length(dates) nrow(spi.plot) you will get different numbers. Perhaps 30 for one of them and 52559 for the other.

Re: [R] wilcox.test - difference between p-values of R and online calculators

2015-01-21 Thread W Bradley Knox
David and Peter, I want to give a *very* belated thanks for your responses. They were enlightening. I ultimately used the wilcox_test function from the coin library. Cheers, Brad W. Bradley Knox, PhD http://bradknox.net bradk...@mit.edu On Wed, Sep 3, 2014 at 4:20 PM, peter

Re: [R] need help with excel data

2015-01-21 Thread Sean Porter
Hi Dr Polanski, I would recommend you do this in excel seeing as you know how to work with excel. You can use excel to put different parts of a cell into another cell. For example if cell A1 is 12*23 34*45 And you want 12 in a separate cell (say cell A2) go to cell A2 and type: =LEFT(A1,2)

Re: [R] need help with excel data

2015-01-21 Thread Collin Lynch
It is good to know R is up to the task and I have to agree with Ista and Jeff that if you are more comfortable in R use it. By way of comparison the python code would look something like what is below. You would need to tweak the regular rexpression (re.match(...) to fit your needs but if you

Re: [R] Re-order levels of a categorical (factor) variable

2015-01-21 Thread Bert Gunter
Bill/Ravi: I believe the problem is that the factor is automatically created when a data frame is created by read.table(). By default, the levels are lexicographically ordered. The following reproduces the problem and gives a solution. library(lattice) z - data.frame(y = 1:9, x = rep(c(pre,

Re: [R] need help with excel data

2015-01-21 Thread Ista Zahn
I agree, R will be fine for this. Not being as expert with regex as Jeff I would tend to do this in a few steps, something like library(XLConnect) DF - readWorksheetFromFile( exampX.xlsx, sheet=examp ) library(stringi) ## insert a marker between the text and the numbers txt -

Re: [R] Assign value to a row in dataframe

2015-01-21 Thread PIKAL Petr
Hi I am not sure if I catch it correctly but from your example state has preference over state new except in the case where state is 0. I would change state_bef 0 to NA and use na.locf function from zoo package. test$state_bef[test$state_bef==0] - NA test$state_bef - na.locf(test$state_bef,

Re: [R] Assign value to a row in dataframe

2015-01-21 Thread zuzana zajkova
Hi Petr, your solution works also perfectly, thanks a lot! Again, I have learned new things :) (Sorry for problems with the dput...) Best wishes, Zuzana zuzanazajk...@ub.edu On 21 January 2015 at 11:57, PIKAL Petr petr.pi...@precheza.cz wrote: Hi I am not sure if I catch it correctly

Re: [R] Assign value to a row in dataframe

2015-01-21 Thread zuzana zajkova
Hi Jim, your code works just perfectly, it is exactly what I was looking for, thank you very much!!! I'm glad to learn something new, I haven't seen the use of drow in 1:(dim(all)[1]) before. I made the code a bit shorter, excluding the use of stat_bef column, which I created just for my intents

Re: [R] “Could not find function observeEvent” in shiny

2015-01-21 Thread Pascal Oettli
Cross-posted here: http://stackoverflow.com/questions/28039426/could-not-find-function-observeevent-in-shiny Cross-posting is considered to be impolite. Regards, Pascal On Wed, Jan 21, 2015 at 1:20 PM, Ramkishore Swaminathan ramkishor...@gmail.com wrote: Hi fellow R community users, I am

Re: [R] New to R

2015-01-21 Thread Lalitha Kristipati
Thanks Regards, Lalitha K. Associate Software Engineer 917411291011 From: Jeff Newmiller jdnew...@dcn.davis.ca.us Sent: 21 January 2015 21:34 To: Lalitha Kristipati; R-help@r-project.org Subject: Re: [R] New to R This is not really a question about