[R] Whole genome searching of 100bp D sequence

Hi, I was wondering I'm going about this in the correct way. I need to test if there are coding sequences or exons in hg19 which match a string of 100bp D i.e. [A,G or T]. However I'm getting a strange result. I get a hit on chr7, using the 100bp search however when I search with 60bp sequence of

[R] heatmap clustering dendrogram export

Hi boyang zhe, The dendrogram is stored in the object returned from heatmap.2 #e.g. x - heatmap.2(matrix(1:9,3)) dend.row - x$rowDendrogram class(dend.row) [1] dendrogram plot(tmp$rowDendrogram) Amos Folarin -- Forwarded message -- From: boyang zhe zheboy...@gmail.com

[R] Problems getting html files out of R CMD check

-- Forwarded message -- From: Duncan Murdoch murdoch.dun...@gmail.com To: Amos Folarin amosfola...@gmail.com Date: Sun, 13 Mar 2011 20:53:57 -0400 Subject: Re: [R] Problems getting html files out of R CMD check On 11-03-13 7:14 PM, Amos Folarin wrote: Hi, I'm trying to R

Re: [R] Problems getting html files out of R CMD check

On 14 March 2011 11:43, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 11-03-14 7:32 AM, Amos Folarin wrote: -- Forwarded message -- From: Duncan Murdochmurdoch.dun...@gmail.com To: Amos Folarinamosfola...@gmail.com Date: Sun, 13 Mar 2011 20:53:57 -0400 Subject: Re: [R

[R] Problems getting html files out of R CMD check

Hi, I'm trying to R CMD check a package, however I have hit a snag. There seems to be a problem with the creation of the /html files (the only file that's constructed here is the 00Index.html). I've tested each of the .Rd files independently with R CMD Rdconv, they all happily create html files

Re: [R] grep with search terms defined by a variable

You might also find match and pmatch of use here. On Aug 3, 2010, at 12:05 AM, Daniel Malter wrote: Hi, I have a good grasp of grep() and gsub() for finding and extracting character strings. However, I cannot figure out how to use a search term that is stored in a

[R] merge two data frames

is appreciated. Thank You. Amos Folarin (BSc MRes PhD) Research Associate, Bioinformatics Group * UCL Cancer Institute Paul O'Gorman Building University College London 72 Huntley Street London WC1E 6BT Direct Line: +44 (0)207 679 0764 Email