Re: [ESS] Need help installing ess using M-x package-install-file

Hello Naresh, On Saturday, 10 Dec 2022 at 08:46, Naresh Gurbuxani via ESS-help wrote: > In my organization, IT security set up disables emacs package > installation from package archives (e.g. MELPA) using M-x > package-install. Therefore, I am downloading package tar files from > package

[ESS] column auto completion for data.frame

Hello, I found myself always complaining about the lack of auto-completion feature for data.frame columns. I decided try my hand at writing a backend that seems to be working, so I thought of sharing it on the mailing list. It is just a small hack that mainly relies on the

[ESS] Removing extra > when evaluating region

Hello, I would like to remove the extra > and + generated when evaluating a region, with ess-eval-visibly set to nil. I saw issue #576 on github and tried to set inferior-ess-replace-long+ to `strip` but I still get misalignement as shown in the example below. I favour the right alignment when

Re: [R] Unexpected date format coercion

Hello On Thursday, 1 Jul 2021 at 08:25, PIKAL Petr wrote: > Hm. > > Seems to me, that both your codes are wrong but printing in Linux is > different from Windows. > > With > as.Date("20-12-2020","%Y-%m-%d") > you say that 20 is year (actually year 20) and 2020 is day and only first > two values

[R] Unexpected date format coercion

Hello, I have been surprised when converting a character string to a date with the following format, in R 4.1.0 (linux debian 10) as.Date("20-12-2020","%Y-%m-%d") [1] "20-12-20" in R 4.0.5 (window 10) as.Date("20-12-2020","%Y-%m-%d") [1] "0020-12-20" Here I was expecting a blunt and sharp

Re: [R] most stable way to output text layout

tenth") > tabify(mat,mat_names) Many thanks for your suggestion, I haven't considered the horizontal spacing before. The columns names do help as well. Best regards, Jeremie > > Jim > > On Sun, Jun 13, 2021 at 2:25 AM Jeremie Juste wrote: >> >> Hello, >>

Re: [R] most stable way to output text layout

Hello, Many thanks to you all for the prompt reply. Thanks for sharing. On Saturday, 12 Jun 2021 at 09:53, Jeff Newmiller wrote: > Can't say this appeals to me, but sprintf would make a difference: > > apply( > mat,1, > function(x) { > x[is.na(x)] <-"" >

[R] most stable way to output text layout

he following command apply( mat,1, function(x) { x[is.na(x)] <-"" cat(x,"\n") }) Do you have any suggestion for how can I have better control on the print layout of the matrix so that I can fix the width of each cell? Best regards,

Re: [ESS] Style: avoid new lines in chains of square brackets [][]

Hello Vincent, > On Wed, Jun 2, 2021, at 19:01, Vincent Arel-Bundock via ESS-help wrote: >> Jeremie, >> >> This is quite embarrassing, but the behavior does NOT replicate under >> vanilla emacs. I should have done my research! I have fallen into this trap (many times) as well so rest assured

Re: [ESS] Style: avoid new lines in chains of square brackets [][]

Hello Vincent, On Wednesday, 2 Jun 2021 at 09:14, Vincent Arel-Bundock via ESS-help wrote: > Hi all, > > Thanks for your awesome work on ESS! > > I use the data.table package with chains of square brackets, and would like > to indent my code as follows: > > library(data.table) > dat =

Re: [R] setRefClass in package

Hello, Many thanks for the reply. Indeed there was no scoping issue here. I was sloppy. Best regards, Jeremie On Wednesday, 24 Mar 2021 at 11:34, Duncan Murdoch wrote: > On 24/03/2021 9:06 a.m., Jeremie Juste wrote: >> Hello, >> I was wondering how to call a function outsid

[R] setRefClass in package

Hello, I was wondering how to call a function outside a setRefClass but inside the package without export it. Let me explain by means of an example. - in the file test-package/R/test.R ##' some description ##' ##' some details ##' @title test ##' @return sideeffect ##' @author Jeremie Juste

Re: [ESS] User-space installation of ESS 18.10.2 failing

/apps/x86_64/emacs/27.1/share/emacs/site-lisp/ess in order to > install ess in .emacs.d? > > Note: I tried installation from MELPA first, but the version of ess > there insists on Emacs 25.1, and my available options are 26.1 or > 27.1. > > Thanks in advance for any tips. --

Re: [ESS] [External] Re: ESS M-x R failing in a Windows installation

kee Campus > > [[alternative HTML version deleted]] > > __ > ESS-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/ess-help > > __ > ESS-help@r-project.org

Re: [ESS] ESS M-x R failing in a Windows installation

tion on Biostatistics and Pharmaceutical Statistics > Institute for Health and Equity, Division of Biostatistics > Medical College of Wisconsin, Milwaukee Campus > > [[alternative HTML version deleted]] > > __ > ESS-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/ess-help -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

Re: [ESS] ESS M-x R failing in a Windows installation

me a way round this is to start R in a shell (in > emacs) and then ess-remote. I’ve moved on to using direnv and lorri but > that’s not an option for windows. > > Dominic Steinitz > domi...@steinitz.org > http://idontgetoutmuch.org > Twi

Re: [ESS] ESS M-x R failing in a Windows installation

roken. > > I am baffled as to why ESS is not finding R.  Any clues? > > Many thanks -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

[ESS] readline with trailing space

aded from /home/djj/.emacs.d/elpa/ess-20200825.829/) but the problem still persist in the latest version. Best regards. -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

Re: [R] readline in function call with space in prompt.

.3snapshot [elpa: 20201122.814] (loaded from c:/Users/Jeremie/AppData/Roaming/.emacs.d/elpa/ess-20201122.814/) I will report it on the ESS mailing list if need be. Many thanks again, Best regards, -- Jeremie Juste __ R-help@r-project.org ma

[R] readline in function call with space in prompt.

: ") > selection: abc[Ret] > a > "abc" It is the expected behavior or am I missing something? Best regards, Jeremie -- Jeremie Juste > R version 4.0.3 (2020-10-10) __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and mo

Re: [ESS] Error message when starting R

e. > > Strangely, I can see a ess-20210204.856 directory, but not the > "ess-20210202.836" . Should I just reinstall the package then? > > Jaime > > On Thu, Feb 4, 2021 at 2:59 PM Jeremie Juste wrote: > >> Hello Jaime, >> >> Could you check the m

Re: [ESS] Error message when starting R

___ > ESS-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/ess-help > -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

[ESS] ess-watch over tramp

be found on the remote on my local R session as.environment("ESSR") works as.environment("ESSR") Do you have any clue? Best regards, -- Jeremie Juste - ess-version: 18.10.3snapshot [elpa: 20200825.829] - emacs: GNU Emacs 28.0.50 (build 1, x86_64-pc-linux-gnu, GTK+ Version

[ESS] feature request support autocompletion of data.table colum names

with this mysterious function: ess-bounds-of-symbol. Do you have a clearer picture than me? Best regards, Jeremie -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

Re: [R] seq.Date when date is the last date of the month

length=24, by="1 month") - 1 > > See this old StackOverflow answer where I used this before: > > > https://stackoverflow.com/questions/8333838/generate-a-sequence-of-the-last-day-of-the-month-over-two-years > > Dirk -- Jeremie Juste

Re: [R] seq.Date when date is the last date of the month

Hello Jim, Many thanks for the feedback > Using "month" first advances the month without changing the day: if > this results in an invalid day of the month, it is counted forward > into the next month: see the examples. Indeed I missed the documentation of seq.Date that refers to seq.POSIXt.

[R] seq.Date when date is the last date of the month

;2012-08-31" "2012-10-01" When the same command is performed for the start of the month. I get a result I expect. > seq(as.Date("2012-08-01"),by="1 month",length=2) [1] "2012-08-01" Is there an explanation for this behavior? Best regards, -- Jeremie Juste __

Re: [ESS] Running R over tramp

ss, > R and (local) Ubuntu. It does not occur when I have run R via tramp on > other remote systems. I believe it is a problem particular to this > remote system, and am seeking a workaround. > > Chris > > On Fri, 2020-12-18 at 22:42 +0100, Jeremie Juste wrote: >> Hello

Re: [ESS] Running R over tramp

ror: internal error >> Error: unexpected '}' in " }" >> > > > > . + > > Error in .ess_keep(funs_exported, is.function) : > could not find function ".ess_keep" >> Error in .ess_keep(funs_pkg, is_first_arg, "pkg") : > could not find function ".ess_keep" >> Error in sort(names(funs_pkg)) : object 'funs_pkg' not found >> > Error: object 'funs_names' not found >> Error: unexpected '}' in "}" >> Error: unexpected '}' in "}" >> Error in .ess.command(options(STERM = "iESS", str.dendrogram.last = > "'", : > object 'withVisib' not found >> > >> > > __ > ESS-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/ess-help > -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

Re: [R] Help with connection issue for R (just joined, leading R for our agency)

Hello Alejandra, || On Tuesday, 8 Dec 2020 at 10:48, Alejandra Barrio Gorski wrote: Welcome to the mailing list. > Greetings, I am new to this list. I joined because I am pioneering the use > of R for the agency I work for. I essentially work alone and would like to > reach out for help on an

Re: [ESS] how to change default emacs behavior, upon running R code, from 2 side-by-by side frames to top-and-bottom frames?

Hello, > When I execute a line of R code, the R buffer opens up as expected, but > it opens in a frame adjacent to the frame containing my source buffer. I > would like it to open the R buffer as a frame below my source code, > rather than adjacent to it. This section of the documentation

Re: [ESS] Start R process from project root

Hello Pavel, A simple way to achieve that would be to use bookmarks or file registers. (info "(emacs) Registers") For instance you can set a file register like the following in your init.el|.emacs (set-register ?r '(file . "favourite-project/")) Notice that the file register works fine for

Re: [R] Aide pour finaliser ce code

the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Best regards, Jeremie Juste On Friday, 9 Oct 2020 at 13:31, Ablaye Ngalaba wrote: > Hello. > Here is my R code. I used the functional data . Now I need

Re: [R] Question about the package "MatchIt"

u are facing. PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Best regards, -- Jeremie Juste __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and mor

Re: [R] exiting mclapply early on error

Hello Giovanni, I don't know if my workflow would suit you but I tend to want the opposite when I launch a parallel process. I tend to want to keep the processes alive as long as they can. If the computation time is long I would not want to lose everything. lapply..8 <- function(X,FUN,...){

Re: [ESS] Best Practice for building R packages

SS. Shall we? We could / should > just start with a wiki and hash out, say, half a dozen high-level topics and > then take turns. Deal? This sounds interesting. I'm in. -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.c

Re: [ESS] Best Practice for building R packages

lines) .. ##' ##' .. content for \details{} .. ##' @title $1 ##' @param $2 ##' @return ##' @author Jeremie Juste $1 <- function($2){ $0 } So typing fn[tab] would expand the snippet and force me to write some documentation. I used to naively include the documentation in the functi

Re: [ESS] Best Practice for building R packages

o ESS than I know and it would be great if we could pool our resources to improve further. For my part `ess-describe-object-at-point` really improved by workflow as it can be customized to include any function. Best regards, -- Jeremie Juste __ ESS-help@r-pr

[ESS] Best Practice for building R packages

nd will not be overwritten. And the file helloRoxygen-package.Rd is not updated. I'll appreciate any lead on this. Best Regards, -- Jeremie Juste __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

Re: [R] help with nesting if else statements

ssigning to type 'logical' (column 6 named 'PHENO') > > Please advise, > Ana > > On Wed, Sep 23, 2020 at 2:48 PM Jeremie Juste wrote: >> >> >> Hello Ana Marija, >> >> I cannot reproduce your error, >> >> with a$PHENO=ifelse(a$PLASER==2 |a$R

Re: [R] help with nesting if else statements

Hello Ana Marija, I cannot reproduce your error, with a$PHENO=ifelse(a$PLASER==2 |a$RTNPTHY==2, 2, ifelse(a$CURRELIG==1 | a$RTNPTHY==1,1,NA)) For instance I have the expected PHENO=2 > FID IID CURRELIG PLASER RTNPTHY PHENO > 39: fam5706 G57061 1 2 2 In

Re: [ESS] How to tame a jumpy iESS buffer?

Hello Shreyas, Thanks for your input. On my side, ess-switch-to-end-of-proc-buffer is set to t by default. So I am not sure it is the issue. Feel free to chip in if you think I'm wrong. Best regards, Jermeie Shreyas Ragavan via ESS-help writes: > I was wondering if this could be related to

Re: [ESS] How to tame a jumpy iESS buffer?

ini-buffer line. When the > minibuffer expands to 2+ lines, the comint buffer jumps. > > Maybe you can try enabling this and see if it causes comint jumpiness. > > FWIW I'm using Emacs 26.3, and the latest ESS on Melpa. > > Thanks. > > -John > > On 9/12/20 4:13 PM, J

Re: [ESS] How to tame a jumpy iESS buffer?

Hello John, Unfortunately, I cannot reproduce your error. We can try to figure out how is Ess working with emacs -Q though. - $ emacs -Q - then load ess-site. If you installed it with melpa then - (package-initialize) - (ess-site) - Do you have the same issue when using IESS? Could

Re: [ESS] how to deal with underscore in ggplot2 etc

I considered leaning towards a more lispy way `test-fun` <- function(s) print(s) but it would not have been very popular. I now think [2] Camelcase is the way to go. [1]: http://irreal.org/blog/?p=344 [2] https://jef.works/R-style-guide/ Hope this helps, Jeremie Juste ___

Re: [ESS] [External] Re: Function to copy command to script?

Hello, > Is there a function to copy an inferior-buffer R command back to the R > script and insert it at point? For a while I have considered doing just that but I ended exploring other options. * First option Have you considered using directly a script buffer for prototyping? This might be a

Re: [R] dir and pattern = ".r"

Hello, you need > dir(pattern="\\.r$",ignore.case=TRUE) remember that the pattern is a regular expression. so ".r" is [any single character]r. So basically it will give you any file that contains r (but not that starts with r) so you got what you expected with > dir(pattern=".txt") just by

Re: [ESS] Feature idea: insert expression before <- at point

Hello I can buy you this feature for a one liner data[ data[,"columnB"] > 123 ,"columnA"] <- gsub("xxx", "yyy",_POINT_ ,fixed=TRUE) To do this you can use the function r/copy-left-of-assign-r-fun-end but you will have to load the function r/get-begin-of-line-point as well (see below) I have

Re: [R] (no subject)

Hello, Can you provide more information? What is your operating system? What is your database management system (sqlite, mySQL,...) What package do you use to import the data in R from the database? What is the default language on your computer? Are the variables not in farsi fine? My guess is

Re: [R] High dimensional optimization in R

Hello, Genetic algorithm can prove handy as well here. see for instance https://cran.r-project.org/web/packages/GA/vignettes/GA.html with non-convex objective functions I usually try a genetic algorithm for a few rounds then finish using nlminb Best regards, Jeremie Marc Girondot via R-help

Re: [R] source() fails in same directory as script: cannot find file

Hello, I suspect the error is in the file input-summerize.R. I creating a new file input-summerize2.R with only print("hello") for instance and check if > setwd("~/documents/white-papers/geochemistry/willamette-river-mercury/scripts") > source("input-summerize2.R") works Hope it helps,

Re: [R] (no subject)

,1] [,2] [,3] > [1,]    2    4    7 > [2,]    3    6    8 > > Le samedi 20 octobre 2018 à 15:21:53 UTC+2, Jeremie Juste > a écrit : > > malika yassa via R-help writes: > > Hello, > > Can you specify what you mean by deleting exactly? > Do you want to have

Re: [R] (no subject)

malika yassa via R-help writes: Hello, Can you specify what you mean by deleting exactly? Do you want to have zero in the diagonal or do you want to extract the non-diagonal part? Besides your matrix is not a square matrix. Do you really want to extract the non-diagonal part of a non square

Re: [ESS] Error starting R

Hello, Can you specify the ess version you are using? I would suggest disabling global-font-lock-mode (M-x global-font-lock-mode) before launching R to see if it works. It is not a fix but just a way to investingate where the problem might be. Best regards, Jeremie Neil Shephard via

Re: [ESS] Error starting R

Hello, Glad you could sort it out. I think version controling the .emacs file and the .emacs.d directory could help solve these issues faster. You could easily go back to a previous working version. This might be helpful if you are in a situation where you really need things to work. I'm

Re: [ESS] Error starting R

uot;) ;; mine (add-to-list 'load-path "/home/djj/.emacs.d/elpa/ess-20181003.755/") (require 'ess-site) I got some errors from julia mode but R works fine. Hope it helps Jeremie Neil Shephard writes: > Hi, > > Thanks for taking the time to reply. > > On Wed, 3 O

Re: [ESS] Stopping "Save workspace image?" prompt

Hello, Have a look at the variable inferior-R-args. (C-h v inferior-R-args). You can customize it to include --no-save. in principle putting (setq inferior-R-args "--no-save") in your .emacs file should do it. Best regards, Jeremie > Hi everyone, > > Does know of a way to stop the "Save

[R] modify the supposed return value of a function during evaluation?

Hello, I'm wondering it is possible and if yes would it be desirable to modify the return value of functions during evaluation. I supposed this would be very useful during debugging myfun <- function(x) {res <- x+3 ; browser() ; res} let say I run the following function myfun(3) and drop

Re: [R] ddply (or other suitable solution) question

Andras Farkas via R-help writes: Hello, set.seed(123.456) df <-data.frame(ID=c(1,1,2,2,2,3,3,3,3,4,4,5,5), read=c(1,1,0,1,1,1,0,0,0,1,0,0,0), int=c(1,1,0,0,0,1,1,0,0,1,1,1,1), z=rnorm(13,1,5), y=rnorm(13,1,5)) May this will suffice? lapply(unique(df$ID),function(x) df[df$ID==x,])

Re: [R] Multiple counters in a single for loop

Duncan Murdoch writes: >> for ( i in 1:length(var1)){ > > This is generally a bad idea: if length(var1) == 0, it does the wrong > thing, since 1:0 is c(1L, 0L). Better to use > > for ( i in seq_along(var1) ) { > granted. One should check the validity of their variables before using them but

Re: [R] Saving objects in RData file in different name

Christofer Bogaso writes: Hello In case you have conflicting data issue when you load data, you can also do it the other way around. Indeed you never know when a possible conflict might occur in the future. The following line load the data in a new environment e first then get it back to

Re: [R] how to locate specific line?

Hello, If you need to go through R the function fread of data.table can speed up the data import. If not and you work on a gnu/linux distro may be awk might help https://stackoverflow.com/questions/5536018/how-to-print-matched-regex-pattern-using-awk HTH, Jeremie

Re: [R] [bug] spdep package?

owosad.github.io/drat/', type='source')) > >> loadedNamespaces() > [1] "compiler" "graphics" "utils" "grDevices" "stats" "datasets" > [7] "methods" "spData""base" > > ## Now,

Re: [R] [FORGED] [bug] spdep package?

Hello, >This is *very* unlikely to be a bug. People should always exercise a >great deal of caution about conjecturing bugs when they encounter a >phenomenon that they don't understand. Ok, I over reacted and I should let the package maintainers qualify what is a bug or not. My point is

Re: [R] [bug] spdep package?

Helllo, Thanks for the info. I still think these variables should not be loaded when library(spdep) is called. But I'll handle it following your suggestion. Thanks, Jeremie > It turns out that that 'x' comes from the spData package and lives > inside that package (part of its

[R] [bug] spdep package?

Hello, I found a dangerous issue in the library spdep. I get variables x and y that cannot be removed by rm() and I don't don't how they show up. Can anyone reproduce this? ~$ R --vanilla > rm(list=ls()) > library(spdep) > x [1] 0 30 60 90 120 150 180 210 240 270 300 330 360 390 420 450

[R] running Rmpi with SGE on a cluster

Hello, I would like to know how to use Rmpi on a cluster but usually the workflow of the cluster uses sun grid engine to launch jobs. I found this reference on the web http://borisv.lk.net/howtos/grid-mpi-r-howto.html. But I could not even reproduce that example some errors with > n.cores <-

Re: [R] Calculate focal values for neighboring cells that are located at the raster edge from the function "focal" in the R package "raster"

Hello, >> I am using the function "focal" in the R package "raster" but I don’t >> understand how the function calculates values for neighboring cells that >> are located at the raster edge. Here is an example reproducible: focal is a method for the S4 object RasterLayer. You can have access

Re: [R] sum multiple csv files

Alejandra Lopez-Galan writes: Hello, I'm not sure to fully answer you question but I'll give it a try. I'll use the library "data.table" as I forgot how to do it in base R. If you don't have it you will have to install it by doing > install.packages(data.table,repos

Re: [R] [FORGED] Re: R vs PYTHON vs SAS vs SPSS?

Rolf Turner writes: > On 01/12/17 20:33, Hasan Diwan wrote: > >> Yes. > > Very true. But some *thinking* is required; that often proves to be a > formidable stumbling block. Or one of the best decision you'll ever take. You cannot master SAS without expensive

[R] Problems installing mice package

Hello, I tried intalling mice package and got the following error: * installing *source* package ‘mice’ ... ** package ‘mice’ successfully unpacked and MD5 sums checked ** libs g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include"

[R] making-a-lisp implementation of R

Hello, I was trying to make my R implementation of making-a-lisp https://github.com/kanaka/mal/tree/master/ And to my surprise I got stuck in the starting blocks. There is already a mal implementation of R here https://github.com/kanaka/mal/tree/master/r but it uses rdyncall package which is

[R] Matrix logical operator

Hello, I have some trouble understanding why !b & is TRUE. Do you have an idea? > b <- matrix(c(0,1,1,0,1,0),2) > !b [,1] [,2] [,3] [1,] TRUE FALSE FALSE [2,] FALSE TRUE TRUE > !b & [1] TRUE Best regards, Jeremie __

[R] How to source a local R file to a remote session.

Hello, I don't know exactly where to turn to. I'm using Emacs speak statistics and I can execute a codes on my local computer to a remote session seemlessly. But I've always wondered how to source a file on local computer to the remote session? Till now I have copied the files to the remote

Re: [R] copula package error when gumbel parameter is close to bound.

Hello > Berwin A Turlach writes: > That you don't have the package Rmpfr installed? And it seems to be > needed for the higher dimension. On my machine it works: > Thanks for the lead, Best regards, Jeremie __