Re: [R] error while plotting

-Original Message- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: Tuesday, September 29, 2009 4:52 AM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] error while plotting Nair, Murlidharan T wrote: -Original Message- From: Uwe Ligges

Re: [R] 3D to 2D projection

Thank you for this info. I think this has what I need. Cheers../murli -Original Message- From: hadley wickham [mailto:h.wick...@gmail.com] Sent: Monday, September 28, 2009 2:27 PM To: Nair, Murlidharan T Cc: David Winsemius; r-h...@stat.math.ethz.ch Subject: Re: [R] 3D to 2D projection

Re: [R] 3D to 2D projection

[mailto:dwinsem...@comcast.net] Sent: Monday, September 28, 2009 2:57 PM To: Nair, Murlidharan T Cc: r-h...@stat.math.ethz.ch Subject: Re: [R] 3D to 2D projection On Sep 28, 2009, at 1:41 PM, Nair, Murlidharan T wrote: David, Have you used persp or trans3d before? Yes, both. persp requires an x-y

Re: [R] error while plotting

, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] error while plotting Nair, Murlidharan T wrote: I am getting the following errors when I am trying to plot the data below. I cannot figure out the error. Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1

Re: [R] 3D to 2D projection

[mailto:dwinsem...@comcast.net] Sent: Saturday, September 26, 2009 10:49 PM To: Nair, Murlidharan T Cc: r-h...@stat.math.ethz.ch Subject: Re: [R] 3D to 2D projection On Sep 26, 2009, at 10:07 PM, Nair, Murlidharan T wrote: Is there a method that I can use to convert 3D coordinates into 2D? Yes. I

Re: [R] error while plotting

-Original Message- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: Sunday, September 27, 2009 1:17 PM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] error while plotting Nair, Murlidharan T wrote: I am getting the following errors when I am trying

[R] 3D to 2D projection

Is there a method that I can use to convert 3D coordinates into 2D? I was looking at persp and trans3d. Are those the ones I should be looking at ? Thanks ../Murli __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

Re: [R] multicomp plotting

From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf Of Nair, Murlidharan T [mn...@iusb.edu] Sent: Thursday, September 24, 2009 2:06 PM To: r-help@r-project.org Subject: [R] multicomp plotting I am trying to plot my multiple comparison

[R] error while plotting

I am getting the following errors when I am trying to plot the data below. I cannot figure out the error. Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1: In min(x) : no non-missing arguments to min; returning Inf 2: In max(x) : no non-missing arguments to

Re: [R] dotchart to barplots

-project.org] On Behalf Of Nair, Murlidharan T [mn...@iusb.edu] Sent: Wednesday, September 23, 2009 5:11 PM To: Greg Snow; Henrique Dallazuanna Cc: r-help@r-project.org Subject: Re: [R] dotchart to barplots Thanks Greg. I was also thinking about it after I saw my plots. Cheers../Murli -Original

[R] multicomp plotting

I am trying to plot my multiple comparison data. Can anyone give me some input of the error I am getting. The data and code is appended below. Thanks ../Murli library(multcomp) sig.data-structure(list(X = 1:63, Cell.lines = structure(c(1L, 6L, 13L, 25L, 33L, 42L, 2L, 7L, 14L, 26L, 34L,

Re: [R] dotchart to barplots

: Henrique Dallazuanna [mailto:www...@gmail.com] Sent: Wednesday, September 23, 2009 3:09 PM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] dotchart to barplots Try this: barplot(t(as.matrix(intersect.data[,2:5])), beside = T, horiz = T, names.arg

Re: [R] dotchart to barplots

- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Nair, Murlidharan T Sent: Wednesday, September 23, 2009 3:21 PM To: Henrique Dallazuanna Cc: r-help@r-project.org Subject: Re: [R] dotchart to barplots I had tried names.arg=c(intersect.data[,1]) so

Re: [R] dotchart to barplots

], cex.axis = 0.7, cex.names = 0.7, las=2) On Wed, Sep 23, 2009 at 4:26 PM, Nair, Murlidharan T mn...@iusb.edu wrote: Ok, I could make it perpendicular by specifying las=2 barplot(t(as.matrix(intersect.data[,2:5])),          beside = T, horiz = T,          names.arg = intersect.data[,1], cex.axis

Re: [R] dotchart to barplots

The journal wants black and white only :) -Original Message- From: Henrique Dallazuanna [mailto:www...@gmail.com] Sent: Wednesday, September 23, 2009 3:41 PM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] dotchart to barplots Perhaps a white border: barplot(t

Re: [R] dotchart to barplots

Thanks Peter. Where did you find that option? It's really cool Cheers../Murli -Original Message- From: Peter Ehlers [mailto:ehl...@ucalgary.ca] Sent: Wednesday, September 23, 2009 3:56 PM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] dotchart to barplots Murli

Re: [R] dotchart to barplots

Guess, I miss the argument when I ?barplot. Cheers../Murli -Original Message- From: Peter Ehlers [mailto:ehl...@ucalgary.ca] Sent: Wednesday, September 23, 2009 3:56 PM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] dotchart to barplots Murli, Two points: 1. I

Re: [R] dotchart to barplots

Thanks Greg. I was also thinking about it after I saw my plots. Cheers../Murli -Original Message- From: Greg Snow [mailto:greg.s...@imail.org] Sent: Wednesday, September 23, 2009 3:49 PM To: Nair, Murlidharan T; Henrique Dallazuanna Cc: r-help@r-project.org Subject: RE: [R] dotchart

Re: [R] joining two points in rgl

),c(1,0,0))), col=red) Thanks for adj. The rgl package is absolutely wonderful. It is extremely useful to me. Cheers../Murli From: Duncan Murdoch [murd...@stats.uwo.ca] Sent: Wednesday, August 19, 2009 9:02 PM To: Nair, Murlidharan T Cc: r-help@r

Re: [R] joining two points in rgl

-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Nair, Murlidharan T Sent: Friday, August 14, 2009 4:14 PM To: Duncan Murdoch Cc: r-help@r-project.org Subject: Re: [R] joining two points in rgl Thanks, for lwd. I could not find rgl 0.85

Re: [R] joining two points in rgl

: Thursday, August 13, 2009 8:24 PM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] joining two points in rgl Nair, Murlidharan T wrote: Hi!! I need to draw a cylinder/tube joining two points. I am trying to make something presentable, I have been able to do it using lines3d

[R] some help with plotting a beautiful structure using rgl

Hi!! I need some help in using the correct required symbol when plotting my DNA structure using rgl. I need to plot one strand using empty circles and the other using filled circles and if possible have sequence in the center. I tried using pch and lty but have not been able to get it to do

Re: [R] some help with plotting a beautiful structure using rgl

Ok, I was able to figure out one part by using rgl.spheres. I am still trying to insert text using rgl.texts. Does any one have a simple example? -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Nair, Murlidharan T Sent: Thursday

[R] joining two points in rgl

Hi!! I need to draw a cylinder/tube joining two points. I am trying to make something presentable, I have been able to do it using lines3d. But is it possible to increase the thickness of the lines? The size parameter does not work. Does any one have any suggestions? Thanks ../Murli

Re: [R] probability on a barplot

Kindly, post the solution to the problem, so that it will benefit others. An example could would be great. Cheers../Murli -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Erin Hodgess Sent: Monday, July 27, 2009 1:33 PM To: R

Re: [R] computing the radius of an arc

[mailto:greg.s...@imail.org] Sent: Friday, July 24, 2009 12:41 PM To: Nair, Murlidharan T; Hans W Borchers; r-h...@stat.math.ethz.ch; Bert Gunter; 'Gabor Grothendieck' Subject: RE: [R] computing the radius of an arc There is a function rsaga.local.morphometry in the RSAGA package that says it computes

Re: [R] computing the radius of an arc

) -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Hans W Borchers Sent: Friday, July 24, 2009 5:41 AM To: r-h...@stat.math.ethz.ch Subject: Re: [R] computing the radius of an arc Nair, Murlidharan T mnair at iusb.edu writes: Hi!! I

[R] computing the radius of an arc

Hi!! I am interesting in computing the radius of an arc that best approximates a curve. Is there an R function that I can use to draw an arc? Nothing useful came up when I searched help.search. Does anyone have any suggestion to do this? Thanks ../Murli

Re: [R] Matrix multiplication precision

-Original Message- From: dmba...@gmail.com [mailto:dmba...@gmail.com] On Behalf Of Douglas Bates Sent: Wednesday, July 15, 2009 7:29 AM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] Matrix multiplication precision On Wed, Jul 15, 2009 at 3:42 AM, Nair, Murlidharan Tmn

[R] Trig functions strange results

I am trying to calculate coordinate transformations and in the process of debugging my code using debug I found the following Browse[1] direction[i] [1] -1.570796 Browse[1] cos(direction[i]) [1] 6.123032e-17 Browse[1] cos(-1.570796) [1] 3.267949e-07 Browse[1] direction[i] [1] -1.570796 Browse[1]

Re: [R] Trig functions strange results

To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] Trig functions strange results FAQ 7.31 This is what happens with floating point number and you are only printing out 7 digits of precision; look at the results cos(-1.570796) [1] 0.003267949 cos(-1.5707961) # just

[R] Matrix multiplication precision

Hi!! I am trying to multiply 5 matrices and then using the inverse of that matrix for further computation. I read about precision problems from the archives and the suggestion was to use as.numeric while computing the products. I am still having problems with the results. Here is how I am

[R] strsplit

I am trying split a string and use one part of it to label graphs. I am using strsplit for that. While I am able to split it, how do I access the separated parts. filName-chrI_2223 part- strsplit(filName,\\_) part [[1]] [1] chrI 2223 part[1] [[1]] [1] chrI 2223 I looked up the help archive

Re: [R] scatterplot3d

-Original Message- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: Thursday, May 14, 2009 4:44 AM To: Nair, Murlidharan T Cc: r-help@r-project.org Subject: Re: [R] scatterplot3d Nair, Murlidharan T wrote: Does anyone have any suggestion on this? I tried par(new=T

[R] scatterplot3d

Hi!! I am interested in plotting 3 different (x,y,z) coordinate sets on the same plot. How do I achieve using scatterplot3d? Is there an easy method to call to change the projection or rotate the figure along a particular axis? The following is the code that plots if one at a time. Any help

Re: [R] scatterplot3d

Does anyone have any suggestion on this? I tried par(new=T) It does not seem to work with scatterplot3d. Any suggestion is appreciated. Cheers../Murli -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Nair, Murlidharan T Sent

[R] boxplot labelling levels

I want the levels to appear in the boxplot instead of 1 and 2. What do I need to do for that? Here is the dummy code. x-runif(100,50,80) x1-runif(100,70,80) True.positives-c(x,x1) splice-factor(c(rep(Human.AA.200,100),rep(Human.AA.100,100)))

Re: [R] how to draw a vertical line from points to x-axis

Anny, You can also do the following plot(0:10, 0:10, pch=16, type=h) Cheers../Murli -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Peter Alspach Sent: Sunday, September 07, 2008 5:10 PM To: Anny Huang; r-help@r-project.org Subject: Re: [R] how to draw

[R] data frame question

I have a data frame containing sequences and I am interested in changing a few sequences in a window and the swapping the original sequence back after I have completed my analysis. My temporary data frame that I am creating seq.in.window does not like the way I am making me assignment. The

[R] Error in .local(object, ...) : test vector does not match model !

I am getting a really strange error when I am using predict on an ksvm model. The error is Error in .local(object, ...) : test vector does not match model !. I do understand that this happens when the test vectors do not match the Model. But in this case it is not so. I am attaching a portion

Re: [R] Text

Dani, You can put text on your graphs using the locator function. Here is an example hist(rnorm(1000,0,1) #plots a histogram for you xy.cord-locator(1) #Once you give this click on the graph to get the coordinates text(xy.cord, Text you want to write) Hope this helps. Cheers../Murli

Re: [R] heatmap

PROTECTED] On Behalf Of Nair, Murlidharan T [EMAIL PROTECTED] Sent: Wednesday, July 02, 2008 2:02 PM To: r-help@r-project.org Subject: [R] heatmap I am interested in plotting a matrix of data using heatmap to reflect frequency of positional occurrence of certain strings. I am not interested

Re: [R] stringdot

Gb. Is my usage wrong ?. I am running this under linux serve 6850 which has about 8Gb memory Any would be appreciated. Cheers../Murli From: [EMAIL PROTECTED] [EMAIL PROTECTED] On Behalf Of Nair, Murlidharan T [EMAIL PROTECTED] Sent: Wednesday, June 25

[R] dotchart

I am trying to plot the following data using dotchart intersect.data-structure(list(X = structure(c(1L, 3L, 8L, 9L, 10L, 11L, 12L, 13L, 14L, 15L, 2L, 4L, 5L, 6L, 7L), .Label = c(1-100, 1001-1100, 101-200, 1101-1200, 1201-1300, 1301-1400, 1401-1500, 201-300, 301-400, 401-500, 501-600, 601-700,

Re: [R] dotchart

Thanks! I put the labels as follows dotchart(as.matrix(intersect.data[-1]), labels=intersect.data[,1], cex=0.8) Murli From: Henrique Dallazuanna [EMAIL PROTECTED] Sent: Wednesday, June 04, 2008 1:49 PM To: Nair, Murlidharan T Cc: r-help@r-project.org

[R] for loop step

How do I define the incremental step in a for loop? for (j in 1:10){ cat(j, \n) } In the above example, if I want to increment j by 2 where do I specify that? Thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing

[R] listing components of an object

Is there a method to list the components of an object, instead of looking at the help for that method? Let me be more clear with an example data(iris) ## tune `svm' for classification with RBF-kernel (default in svm), ## using one split for training/validation set obj - tune(svm,

[R] Non-independent paired measures

I am interested in generating simulated data for demonstrating sampling distribution of the mean difference between non-independent paired measures. Is there an elegant way do generate non-independent data sets? Thanks ../Murli [[alternative HTML version deleted]]

Re: [R] multicomp plotting

or does it have to do with attributes typeof? I would appreciate if you could clarify this for me. Thanks. Cheers../Murli -Original Message- From: Richard M. Heiberger [mailto:[EMAIL PROTECTED] Sent: Wednesday, October 24, 2007 12:34 AM To: Nair, Murlidharan T; r-help@r-project.org

[R] multicomp plotting

I am trying to plot a large set of multiple comparison data from a csv file. I used to do in the following manner, but its giving me an error now, and I am not sure what correct. I have put the data in the code using the output from dput for completeness. Can anyone help me with my mistakes?

Re: [R] combining vectors on unequal length

Thanks to all for their suggestions!! Cheers../Murli -Original Message- From: Gabor Grothendieck [mailto:[EMAIL PROTECTED] Sent: Thursday, October 04, 2007 3:30 PM To: Nair, Murlidharan T Cc: [EMAIL PROTECTED] Subject: Re: [R] combining vectors on unequal length Assuming