PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
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Project Scientist
JAMSTEC
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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JAMSTEC
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[[alternative HTML version deleted
...@gmail.com [skalp.oet...@gmail.com] on behalf of
Pascal Oettli [kri...@ymail.com]
*Sent:* Wednesday, September 18, 2013 8:20 PM
*To:* wacguy
*Cc:* r-help
*Subject:* Re: [R] cov2cor exp
Hello,
I am just wondering why to reinvent the wheel?
Regards,
Pascal
2013/9/19 wacguy g
Hello,
Please have a look at:
http://cran.r-project.org/doc/manuals/R-lang.html#Constants
Hope this helps,
Pascal
2013/9/18 Pascal Oettli kri...@ymail.com
Hello,
Apologies. findFn('cov2cor') did not find it...
Regards,
Pascal
2013/9/18 Pascal Oettli kri...@ymail.com
Hello
') ?
Regards,
Kenn
On Wed, Sep 18, 2013 at 8:19 AM, Pascal Oettli kri...@ymail.com wrote:
Hello,
Apologies. findFn('cov2cor') did not find it...
Regards,
Pascal
2013/9/18 Pascal Oettli kri...@ymail.com
Hello,
From where this function comes?
Regards,
Pascal
2013/9/18
/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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PLEASE do read the posting guide
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and provide commented, minimal, self-contained, reproducible code.
--
Pascal Oettli
Project Scientist
JAMSTEC
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list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Pascal Oettli
Project Scientist
JAMSTEC
Yokohama, Japan
[[alternative HTML version
, reproducible code.
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Hello,
Apologies. findFn('cov2cor') did not find it...
Regards,
Pascal
2013/9/18 Pascal Oettli kri...@ymail.com
Hello,
From where this function comes?
Regards,
Pascal
2013/9/18 Guy Wachsman guy.wachsm...@duke.edu
Hi there,
Can anyone explain this function, I have the function
join the points (xx, yy) with stair steps (as
type = s)
plot(xx, yy, type=n)
lines(xx, yy, type =s)
but I want to change the color according to the value of zz (exemple :
col = 1 if zz =3 ; col =2 if zz= 4 ; col =3 if zz= 5 ; col =4 if zz= 6)
Thank you for your help
--
Pascal Oettli
Project
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read the posting guide
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and provide commented, minimal, self-contained, reproducible code.
--
Pascal Oettli
Project Scientist
JAMSTEC
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[[alternative HTML version deleted]]
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Hello,
Did you load it?
require(Hmisc)
Regards,
Pascal
2013/9/9 Rhode Early CHARLES rhodeea...@yahoo.fr
Hi,
I was trying to install.packages(Hmisc). I followed all the steps but
nothing appears to have changed on my R.
my labels still don't appear.
Rhode
--A Dieu soit la
Hello,
Please stop to use R help for the subject of your mail. You already used
it several times.
You have been asked to stop to send e-mail in HTML.
You also have been asked to use dput() when you want to submit data to this
list.
For the current problem, there is no reproducible code, as it
Hello,
Using a web search engine, I found, for example:
http://www.unt.edu/benchmarks/archives/2003/february03/rss.htm
http://sas-and-r.blogspot.jp/2012_09_01_archive.html
Hope this helps,
Pascal
2013/9/5 Dustin Fife df...@ou.edu
I've been working on a way to visualize a spearman
On Wed, Sep 4, 2013 at 12:54 AM, Pascal Oettli kri...@ymail.com wrote:
Hello,
Your example worked for me.
R sessionInfo()
R version 3.0.1 Patched (2013-09-02 r63805)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME
Hello,
Your example worked for me.
R sessionInfo()
R version 3.0.1 Patched (2013-09-02 r63805)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8
Hello,
Could you at least provide error messages? I just broke my crystal ball.
Regards,
Pascal
2013/8/31 prakashdevkumar prakash.dev-ku...@hp.com
I have an Ubuntu Quantal 12.10 Server 64-bit instance. Trying to install R
libraries. Facing issue in installing library(qdap)
library(openNLP)
Hello,
Check the result of
min(c(1,2,3,4,NA,6))
And read
?min
Hope this helps,
Pascal
2013/8/31 Casey Zhang casey1...@gmail.com
Hi,
I'm just starting to learn how to use R and I'm trying to create a
histogram with 7 breaks. This is my code so far:
Hello,
Here is the R-help mailing list. For Rstudio-sever support, please see
http://support.rstudio.org/help/discussions
Regards,
Pascal
2013/8/31 qiulin qiulin.w...@gmail.com
I appreciate your time, thank you in advance :)
I'd like to start 2 rstudio-server in one Linux machine, one
Hello,
In the absence of a commented, minimal, self-contained, reproducible code
(as kindly requested), it is hard to help you.
Regards,
Pascal
2013/8/29 Wildgruber, Christoph U. wildgrube...@ornl.gov
Hi,
I started evaluating the 'Peaks' package a couple of months ago and found
it to be
Hello,
If you can, you probably should upgrade for R version 3.0.1.
Regards,
Pascal
2013/8/27 Peter Maclean pmaclean2...@yahoo.com
I would like to store a big spatial weight matrix in R memory to do more
calculation. I know there are memory issue for 32 bit computer and I have
tried
all your help, thank you.
Igor.
On Mon, Aug 26, 2013 at 9:44 PM, Pascal Oettli kri...@ymail.com wrote:
Hello,
That is why I changed 2 lines in the code. Because points are misplaced
if you keep points with the lines.
Regards,
Pascal
2013/8/27 Igor Ribeiro igor...@gmail.com
Because
Hello,
graph is a Bioconductor package.
Regards,
Pascal
2013/8/28 Lianne Schroeder lsch...@uic.edu
I have tried to find pkg graph and R reports back that it doesn't exist for
R 3.0.1, so how do I get ggm to work with out that? Or is there something
that has replaced graph and ggm needs to
Hello,
Use zoo instead.
Regards,
Pascal
2013/8/28 Sudheer Joseph sjo.in...@gmail.com
Also, if that was the case, in below specification it should take the
timeseries properly which so not takesplace.
1825/365
[1] 5
ts(ru, start = c(2003, 1, 1), end = c(2007, 12, 30), frequency = 365)
, Pascal Oettli kri...@ymail.com wrote:
Hello,
In labcurve, use keys=c(19,5). It is said in examples provided in the
help page.
Regards,
Pascal
2013/8/23 Igor Ribeiro igor...@gmail.com
Dear all,
I have a plot with two lines and I'm using labcurbe (package Hmisc) to
show
the legend
... Just draw the legend the
way I need.
On Aug 26, 2013 8:35 PM, Pascal Oettli kri...@ymail.com wrote:
Hello,
Please keep the r-list included when you reply.
Why do you want to add points to lines only in the legend? If so, the
legend would be incorrect.
Regards,
Pascal
2013/8/26 Igor
Hello,
In labcurve, use keys=c(19,5). It is said in examples provided in the
help page.
You should also modify the following lines:
lines(timeseries,dataseries1,col=red,type=l)
lines(timeseries,dataseries2,col=blue,type=l)
Regards,
Pascal
2013/8/23 Igor Ribeiro igor...@gmail.com
Dear all,
Hello,
You may find hints in the following thread:
https://stat.ethz.ch/pipermail/r-help/2011-June/281493.html
Regards,
Pascal
2013/8/21 Beaulieu, Jake beaulieu.j...@epa.gov
Hi,
I would like to include the greek letter mu, in italics, in an axis title.
The following gets close, but the
Hello,
Before asking, did you search on Internet using a web search engine?
Regards,
Pascal
2013/8/20 Sebastian Kruk residuo.so...@gmail.com
Dear R-users,
I have a shape file (.shp, sbx, .sbn, .shx and .dbf).
Can I create the Spatial Weights inside R?
Thanks,
Sebastián.
packages:
[1] grImport_0.8-4 XML_3.98-1.1
Andy
On 14 August 2013 12:50, Pascal Oettli kri...@ymail.com wrote:
Hello,
What is the result of sessionInfo()?
Regards,
Pascal
2013/8/14 Andrew Halford andrew.half...@gmail.com
Hi Listers
I have been trying to import a .ps graphic
Hello,
Maybe this link might help:
http://www.stats.uwo.ca/faculty/yu/Rmpi/install.htm
Regards,
Pascal
2013/8/13 Patrick Connolly p_conno...@slingshot.co.nz
With R-3.0.1
Loading required package: Rmpi
Failed with error: package Rmpi was built before R 3.0.0: please
re-install it
Hello,
r1$df and r2$df don't exist.
Regards,
Pascal
2013/8/13 Ingo Wardinski i...@gfz-potsdam.de
G'day
I try do compute some F-statistics of a singular spectrum analysis of a
timeseries sv
I run:
require(Rssa)
s - ssa(sv)
summary(sv)
Min. 1st Qu. MedianMean 3rd Qu.Max.
Hello,
What is the result of sessionInfo()?
Regards,
Pascal
2013/8/14 Andrew Halford andrew.half...@gmail.com
Hi Listers
I have been trying to import a .ps graphic file into R using the grImport
package but I keep getting the following error message
Error in PostScriptTrace(fish.ps) :
Hello,
According to the list of available packages, there is no EMMIX package.
You probably should use a web search engine to find where you can download
a EMMIX version for R.
Regards,
Pascal
2013/8/1 Tjun Kiat Teo teotj...@gmail.com
Is the R package EMMIX available ? I tried installing it
Hello,
Once again, the matrix EWMA has not the correct size.
Did you carefully read the answer by Thomas Stewart?
https://stat.ethz.ch/pipermail/r-help/attachments/20130724/c454b0f7/attachment.pl
Extract of his reply: When you expand the example to 5 stocks,
there will be 15 elements (5
Hello,
Is there any reason for you to install an almost 3-year-old version of R?
Regards,
Pascal
2013/7/25 Arnab Chakrabarti chakrabarti.ar...@gmail.com
Hi all. I am new to R. I have just installed R2.10.1 for my Windows 7
computer. When I go to Packages Install Packages on the drop-down
Hello,
Please use dput() to provide useful dataset and avoid the use of HTML when
sending a e-mail to this list.
Regards,
Pascal
2013/7/23 Stefano Sofia stefano.so...@regione.marche.it
Dear R-users,
given the following data frame called hospital_2004
gender d_birth m_birth y_birth
Hello,
I would avoid the use of vector files for presentation, as Powerpoint will
display a rasterized version off the vectorized image (if I am not
mistaken). I always directly use raster files, as png.
For eps, I use the following command in R.
postscript(file='file.eps', onefile=FALSE,
Hello,
?zoo
Regards,
Pascal
2013/7/23 shanxiao shanx...@umail.iu.edu
Dear all,
I have a vector of observations through day, and based on it, I try to
construct a daily time series with the R function ts(), but it seems that
it
only enables to construct a weekly, monthly, quarterly and
and covariance*
*for* (i *in* 2:T){*# loop though the sample*
S = lambda * S + (1-lambda) * *t*(y[i]) %*% y[i]
EWMA[i,] = *c*(S)[*c*(1,4,2)] *# convert matrix to vector *
}
On Thu, Jul 18, 2013 at 5:54 AM, Pascal Oettli kri...@ymail.com wrote:
Hello,
1
Hello,
1) In the provided example, you have 2 stock returns and
EWMA = matrix(nrow=T, ncol=3)
See the number of columns (2+1)
Please modify the number of columns according to the number of stock
returns.
2) As you have 5 stock returns, the following cannot work
EWMA[1,] = c(S)[c(1,4,2)]
Hello,
require(sos)
findFn(median and smoothing)
Regards,
Pascal
2013/7/18 Rui Barradas ruipbarra...@sapo.pt
Hello,
Maybe ?stats::smooth
Hope this helps,
Rui Barradas
Em 17-07-2013 22:47, Witold E Wolski escreveu:
Looking for robust smoothing methods available in R... a robust
Hello,
in is a reserved word.
?Reserved
Hope this clarifies,
Pascal
2013/7/11 jpm miao miao...@gmail.com
Hi,
I have a matrix whose columns are named as in and out. Then I coerce
it to be a data.frame. However the system seems to forbid me from using the
name in, but I am not aware
as
syntactic names (see make.names). They are allowed as non-syntactic names,
e.g. inside backtick quotes.
You should prefer the use of [ rather than $.
Regards,
Pascal
2013/7/11 jpm miao miao...@gmail.com
Just wonder why R does not remind me so when I use it as a dimname...
2013/7/11 Pascal Oettli
Hello,
Maybe the reason why:
http://www.cran.r-project.org/doc/manuals/R-admin.html#Compilation-flags
Regards,
Pascal
2013/7/11 Mark Dalphin mark.dalp...@pacificedge.co.nz
I have found a solution to the repeated seg-faults below.
If I set environment variables:
setenv CFLAGS -O2
Hello,
You should read the following first:
http://www.cran.r-project.org/doc/manuals/R-admin.html#Installing-R-under-Unix_002dalikes
http://www.cran.r-project.org/doc/manuals/R-admin.html#Essential-and-useful-other-programs-under-a-Unix_002dalike
Hello,
I'm not sure whether it is dur to the HTML version or not, but there is a
problem with quotation marks in your first line.
Regards,
Pascal
2013/7/5 RODRIGUEZ MORENO VICTOR MANUEL rodriguez.vic...@inifap.gob.mx
Hi, I have to run almost 120 stations files of temperatura (mx and min),
Hi,
testUnique - unique(testData[!is.na(testData)])
or
testUnique - unique(na.omit(testData))
And probably some other solutions.
Regards,
Pascal
2013/7/5 Pancho Mulongeni p.mulong...@namibia.pharmaccess.org
Hi,
I am trying to remove duplicate Patient numbers in a clinical record, I
used
at 8:26 AM, Pascal Oettli kri...@ymail.com wrote:
Hi,
Did you load bdsmatrix?
Regards,
Pascal
2013/6/21 Tjun Kiat Teo teotj...@gmail.com
What are the possible options I have for Generalized choleksy Inverse in
R. I tried to use the package bdsmatrix and and was given the error
message
H
ello,
Did you read ?data.frame and ?expand.grid.
data.frame(x=1:2, y=1:2)
x y
1 1 1
2 2 2
expand.grid(x=1:2, y=1:2)
x y
1 1 1
2 2 1
3 1 2
4 2 2
There is a small difference, isn't it?
Regards,
Pascal
2013/6/28 Zhaoran Zhou zhaoran1...@gmail.com
Hello everyone,
i found that both of
Hello,
You need to install python-devel.
Regards,
Pascal
On 27/06/2013 12:24, Kaptue Tchuente, Armel wrote:
Hello everyone,
I try without success to install the package rPython
I get the message
---
* installing *source*
Hi,
A 5-second search on Internet brought me here:
http://en.wikibooks.org/wiki/Data_Mining_Algorithms_In_R/Clustering/K-Means
Regards,
Pascal
On 20/06/13 15:57, Safiye Celik wrote:
Hi,
Does anybody know the difference between the Lloyd and Forgy algorithms
specified for R's kmeans
Hi,
Did you run R CMD build test1pkg in a command prompt window?
Regards,
Pascal
On 20/06/13 17:01, jpm miao wrote:
Hi,
Following your advice, I install R tools from
http://cran.r-project.org/bin/windows/Rtools/
Rtools215.exe http://cran.r-project.org/bin/windows/Rtools/Rtools215.exe
Hi,
What is the error message? You don't provide it.
Regards,
Pascal
2013/6/20 Jannis bt_jan...@yahoo.de
Dear R users,
i am trying to get the line number of the code where an error is produced.
With the options:
options(keep.source = TRUE, show.error.locations = TRUE, keep.source.pkgs
Hi,
Did you load bdsmatrix?
Regards,
Pascal
2013/6/21 Tjun Kiat Teo teotj...@gmail.com
What are the possible options I have for Generalized choleksy Inverse in
R. I tried to use the package bdsmatrix and and was given the error message
function solve.gchol does not exist. Thanks
Tjun
Hello,
What did you try to do by yourself before to ask?
Regards,
Pascal
On 20/06/13 13:56, Suparna Mitra wrote:
Hello R experts,
I want to add some extra words to number to existing column header. Can
anybody tell me how to do that.
e.g. if I have a data.frame
Height.1 Height.2
in
forum, but couldn't find the exact what I mean.
May be my search terms are not perfect.
Thanks,
Mitra
On 20 June 2013 13:04, Pascal Oettli kri...@ymail.com
mailto:kri...@ymail.com wrote:
Hello,
What did you try to do by yourself before to ask?
Regards,
Pascal
On 20/06/13 13
Hello,
I was able to install the nloptr package by editing the src/Makevars file.
I added the line
mv .libs lib; \
between
make install; \
ls | grep -v ^include$$ | grep -v ^lib$$ | xargs rm -rf; \
for NLopt compilation.
You probably should contact the package
Hello,
?grep
grep('ARUN', MyDat$NAME)
[1] 2
Regards,
Pascal
On 13/06/13 16:08, R_Antony wrote:
Hi
Here i have a dataframe called MyDat.
MyDat- data.frame(NAME = c(ANTONY001, ARUN002, AKBAR003,
JONATHAN004, PETER005, AVATAR006, YULIJIE007, RAM008,
DESILVA009),
COL_A = c(0, 0, 0, 1, 0, 1,
Hello,
If you carefully check the error message, it is clearly written:
RS-PostgreSQL.h:23:26: fatal error: libpq-fe.h: No such file or directory
Some header files are missing.
Here is the result of a quick search on the web: libpq-dev for Ubuntu.
If I may suggest, you should upgrade the
Hello,
Already asked and answered here:
http://stackoverflow.com/questions/4034436/extract-the-gradient-from-the-deriv-command
Regards,
Pascal
2013/6/11 jpm miao miao...@gmail.com
Hi,
I have a structure, which is the result of a function
How can I access the elements in the gradient?
Hello,
I am not sure whether it helps you, but I was able to install it.
OpenSUSE 12.3
R version 3.0.1 Patched (2013-06-09 r62918)
pbdMPI version 0.1-6
gcc version 4.7.2
OpenMPI version 1.6.3
I didn't try with the most recent version of ompi (1.6.4).
Regards,
Pascal
On 07/06/13 21:42,
Hi,
library(forecast)
?Arima
And if you don't know what ar and ma are, you probably should read
some book before to go further.
Regards,
Pascal
On 10/06/13 14:03, Aakanksha Dahiya01 wrote:
It would be great help if someone just tell me what does ar1,ma1 and ma2
signify here.. how do I
Hello,
You also can use the package sos
findFn('non-parametric multivariate
ANOVA')
Regards,
Pascal
2013/6/7 Mikhail Umorin mike...@gmail.com
Hello,
I am comparing treatments by comparing within group to between group
distances like
described in
MJ Anderson. 2001. A new method for
Hi,
I am not sure what you are looking for. Here are some examples:
foo - function(a,b,x) a + b*x
foo
function(a,b,x) a + b*x
a - 2
b - 3
x - 0:10
foo(a,b,x)
[1] 2 5 8 11 14 17 20 23 26 29 32
Or
library(polynom)
p1 - polynomial(c(a,b))
p1
2 + 3*x
f1 - as.function(p1)
f1(x)
[1]
Hello,
?plotmath - See Also
demo(plotmath)
Regards,
Pascal
On 05/06/13 15:00, Santosh wrote:
Thanks so much!!
Would be it be better if in vignette of plotmath, x %~% y and x~~y;
likewise, other operations (.e.g.,
x %*% y, x * y) may be grouped, so that are not missed by a layman like
me! -
Hello,
1) It is always nice to say something as Hello,
2) What do you want us to do with that script, without the required commented,
minimal, self-contained, reproducible code?
3) The lastest version of R is 3.0.1.
Regards,
Pascal
2013/6/5 Scott Raynaud scott.rayn...@yahoo.com
This
Hello,
cast is in reshape library. Is it loaded?
Regards,
Pascal
2013/6/5 Neotropical bat risk assessments neotropical.b...@gmail.com
Hi all,
I am revisiting using reshape2 to aggregate critter (bats) occurrences
by time blocks and have the final output for each row sum a percentage
such
Hi,
There is a problem with xlim and ylim.
map(worldHires,Antarctica,xlim=c(-180,180),ylim=c(-90,-60),col=gray90,fill=TRUE)
You also might have a look at ggplot2
library(ggplot2)
world - map_data(world)
worldmap - ggplot(world, aes(x=long, y=lat, group=group)) +
geom_path() +
Hello,
Example not reproducible:
exc - list(units=list( c(m^2)) ,vars= list(c('asb')), ,label=
list(c('abs surf body')))
Error: object 'm' not found
Regards,
Pascal
On 05/06/13 11:39, Santosh wrote:
Dear Rxperts,
How do I overcome the anomaly as in the second case of examples below?
Hi,
On possibility is:
par(mfrow=c(2,1), mar=c(5.1,5.1,4.1,2.1))
plot(1,1, ylab=expression(a.s.b.~(m^2)))
plot(1,1, ylab=expression(abs~surf~body~(m^2)))
Regards,
Pascal
On 05/06/13 11:39, Santosh wrote:
Dear Rxperts,
How do I overcome the anomaly as in the second case of examples below?
My mistake,
Regards,
Pascal
On 06/03/2013 04:37 PM, Uwe Ligges wrote:
On 03.06.2013 07:19, Pascal Oettli wrote:
Hi,
How did you upgraded your version of R? From source or from a Linux
package?
Actually the new R installation is just broken. It simply has to be
reinstalled carefully
Hi,
How did you upgraded your version of R? From source or from a Linux package?
Regards,
Pascal
On 05/31/2013 11:33 AM, Christoph Knapp wrote:
Hi,
I recently updated to R 3.0.1. I'm running linux ubuntu 12.04. I
realized that I have to update all the installed packages so I run
Hi,
Did you read the help page?
?write.table
Arguments
quote
a logical value (TRUE or FALSE) or a numeric vector. If TRUE, any
character or factor columns will be surrounded by double quotes. If a
numeric vector, its elements are taken as the indices of columns to
quote. In both cases,
Check out the CRAN task view on Robust Statistical Methods:
http://cran.r-project.org/web/views/Robust.html
and on Multivariate Statistics:
http://cran.r-project.org/web/views/Multivariate.html
Regards,
Pascal
On 05/30/2013 05:07 PM, nafiseh hagiaghamohammadi wrote:
Hi
my data has four
Hi,
I do not use R for Windows. But I would say that you have to run
'Rscript.exe' in a CMD prompt, if I am not mistaken. Not in 'Rgui'.
In 'Rgui', use 'source'.
Hope this helps,
Pascal
On 05/29/2013 03:07 AM, Mark Russell wrote:
Greetings,
I have just downloaded R onto a 64bit PC
Hello,
I would say:
1. Which R version?
2. Which OS?
3. Where is the requested commented, minimal, self-contained,
reproducible code?
Regards,
Pascal
On 05/29/2013 10:05 AM, alex mutuku wrote:
hallo,i have a problem with running some code in R2Winbugs am getting the
following error.Error
Hi,
It is a Windows problem.
CMD.exe does not support having a UNC path as the current directory.
Regards,
Pascal
On 05/29/2013 07:39 PM, Jose Iparraguirre wrote:
Dear all,
I have been experiencing difficulties in running the x12 package. I'm
encountering the following error message which
Hi,
The combination read.table (and its arguments) + stdin also can be
used, directly in R.
read.table(stdin(), ...)
Regards,
Pascal
On 29/05/2013 21:35, Jim Lemon wrote:
On 05/29/2013 02:02 AM, jcrosbie wrote:
Hi, I'm trying to download data from:
http://www.ngx.com/settlehistory.html
Hello,
Yes, I do. I just copy and paste smallest blocks, easiest to debug.
Regards,
Pascal
On 28/05/2013 15:54, Mark Breman wrote:
Hello List,
When i paste a large block of R code from an editor to the R command line
the execution of the code will often fail at some point because it is not
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