Re: [R] Was there a change to R ver. 3.5.2 so that it now treats warnings during installs as errors?

lf of Duncan Murdoch" < > r-help-boun...@r-project.org on behalf of murdoch.dun...@gmail.com> wrote: > > On 19/01/2019 8:22 p.m., Peter Waltman wrote: > > I'm trying to install a devel package called gGnome ( > > https://github.com/mskilab/gGnome). One of i

[R] Was there a change to R ver. 3.5.2 so that it now treats warnings during installs as errors?

I'm trying to install a devel package called gGnome ( https://github.com/mskilab/gGnome). One of its dependencies is another package from the same group, called gTrack, which causes several warning messages to be generated because it overloads a couple of functions that are part of other packages

[R] __FILE__ object in R

directory, we can't hard-code that location if we want these to be general purpose, and would like access to that within the script, themselves, because in some cases, they need to be able to access each other. Thanks, -- Peter Waltman, Ph.D. pwalt...@ucsc.edu 617.347.1876 [[alternative

[R] How to remove/prevent trailing space after tab completion in R shell

in a trailing space after the $An.example - $An.example* *, requiring that it be deleted before the next term is specified. Any idea how to turn this off? Is this a shell integration issue? Something I'd need to do by compiling my own version? Thanks! Peter Waltman [[alternative HTML version

Re: [R] Running R under Sun Grid Engine with OpenMPI tight integration

Hi - I saw your posting on the R-help mailing list. Were you ever able to get this working? did you end up switching to use the rsge library? I'm trying to do the same, and not having very much luck getting it going. Thanks! Peter Waltman [[alternative HTML version deleted

[R] Problem with loading RMySQL under sge/qsub

Hi - I'm trying to set up a parallelized batch job that is run under rmpi and managed by sge, using qsub, but it reports that it can't load RMySQL because it can't find the libmysqlclient.so.15 file. Note, when I run R interactively, and manually load the RMySQL library, it works without a

[R] Looking for suggestions on how to debug pvm/snow proc's

Hi All - I'm running a faily long script that uses rpvm snowFT to spawn off multiple processes with the 'clusterApplyFT' function. Specifically, what happens is that the head node generates a number of seed clusters that are then spawned off to the pvm cluster (in this case, nodes on a 4

[R] Help with using 'get' function and variable scope

Hi - I'm having a really hard time w/understanding R's get function, and would appreciate any help with this. Specifically, I'm using a for loop to call a function. I'd like the function to have access to the variable being incremented in the for-loop, i.e. t.fn - function() return( get( i ) )

[R] Suggestion on how to make permanent changes to a single object in a list?

one to have direct access to the objects' memory space. Onyway, one workaround would be to pass in the whole fooStack object and the index of the elt that you want to modify to the fooModifier fn, but I'd rather not have to pass the whole thing in. Any suggestions? Thanks! Peter

Re: [R] Suggestion on how to make permanent changes to a single object in a list?

On Jan 3, 2008 4:35 PM, Peter Waltman [EMAIL PROTECTED] wrote: specifically, imagine we have: fooStack - list() for ( i in 1:5 ) fooStack[[i]] - list() and we have a function: fooModifier - function( foo ) { foo$bar - bar } then, if we invoke

Re: [R] Suggestion on how to make permanent changes to a singleobject in a list?

fooStack[[1]] - fooModifier(fooStack[[1]]) I thought of this idea as well, and may go with it, if the Gabor's environments idea doesn't work snip Peter, perhaps it would help if you gave us more context into why you wanted this done, and perhaps then someone can suggest a more natural

[R] Error with read.delim read.csv

convert the file into a comma-separated file and use read.csv. As a quick workaround I can use scan strsplit, but thought someone might want to take a look at this problem. Thanks, Peter Waltman p.s. the combination of scan strsplit I describe above was as follows: my.lines - scan

[R] how can I attach a variable stored in

on R's handling environment and scoping. Thanks, Peter Waltman __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal

Re: [R] how can I attach a variable stored in

: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Peter Waltman Sent: Thursday, September 20, 2007 1:32 PM To: r-help@r-project.org Subject: [R] how can I attach a variable stored in Hi - Any help would be greatly appreciated. I'm loading a list variable that's stored in an .RData file