On Thu, Mar 08, 2018 at 03:29:14PM +, Sparapani, Rodney wrote:
> Hi Ross:
> I agree with Rich and Vitalie. This just works out of the box: no .emacs
> fiddling.
> Perhaps, you are tripping over the recent tightening of the interface. The
> last bullet point
> in the New features section of
On Thu, Mar 08, 2018 at 04:22:04PM +0100, Vitalie Spinu wrote:
>
>
> >> On Wed, Mar 07 2018 18:29, Ross Boylan wrote:
>
> > The file I opened initially, the one that sources all the others, is above
> > the
> > package directory. It sources files
On Wed, Mar 07, 2018 at 09:55:51PM -0500, Richard M. Heiberger wrote:
> My guess is that starting from outside the package misled ESS.
> Try this sequence.
>
> library(mypackage)
> ## then open the R source in directory mypackage/R/
> ## modify the R files and C-c C-c revised functions. They
On Wed, Mar 07, 2018 at 08:52:39PM -0500, Richard M. Heiberger wrote:
> normally, it just works. Do you have a recent ESS?
git tip as of yesterday.
> Try turning off
> your .emacs and see if that helps.
>
My .emacs file loads ESS. I suppose I could try an .emacs file that
only does that.
On Tue, Mar 06, 2018 at 10:18:13AM -0800, Ross Boylan wrote:
...
> have -no-init-file). So I renamed it and tried again in the cloned ESS3.
> Results attached. Lots of warnings, but again it seems to get through
> the ess-sas stuff that was a problem, only to fail with
> ess-r-xref.e
On Tue, Mar 06, 2018 at 02:48:27PM +, Sparapani, Rodney wrote:
> Hi Ross:
>
> I can’t reproduce your problem here. From your make
> error below, it seems that ess-sas-a.el might be tampered.
> Could you refresh that file from
> git and rebuild to check?
>
> > [ess-sas-d:] require 'ess-sas-l
Attempting to follow the installation instructions I tried to run
make. It failed because EMACS=t when running a shell inside emacs
24.4.1.
The Makeconf file included by the Makefile in the lisp directory
includes the line
EMACS ?= emacs
which set EMACS = emacs unless it is already set (which it
on which to base a
long-run sell decision.
Ross Boylan
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and provide commented, minimal, self
curious how
the single core performance of the different compiler compare.
Sometimes it's desirable to keep code to a single core, e.g., if you
have assigned n jobs to n cores you don't want each job trying to grab
more cores.
Ross Boylan
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want to display them in other forms, and so
am trying to shift to returning a summary object.
Thanks.
Ross Boylan
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r1 - totalEffect.all(dsim, simjob)
Error: attempt to apply non-function
traceback()
1: totalEffect.all(dsim, simjob)
class(totalEffect.all)
[1] function
How can I find out where in totalEffect.all the error is arising?
My only theory for the lack of line number was that totaEffect.all was
On Thu, 2014-04-24 at 19:29 -0400, Duncan Murdoch wrote:
On 24/04/2014, 6:40 PM, Ross Boylan wrote:
r1 - totalEffect.all(dsim, simjob)
Error: attempt to apply non-function
traceback()
1: totalEffect.all(dsim, simjob)
class(totalEffect.all)
[1] function
How can I find
/14 16:00, Ross Boylan wrote:
I am trying to ensure that a directory is searched first, but it gets
stuck at the end of LD_LIBRARY_PATH:
$ export LD_LIBRARY_PATH=~/install/lib
$ R
R version 3.0.2 (2013-09-25) -- Frisbee Sailing
Copyright (C) 2013 The R Foundation for Statistical
.
Ross Boylan
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and provide commented, minimal, self-contained, reproducible code.
The R Inferno advises that if you are building up results in pieces it's
best to pre-allocate the result object and fill it in. In some testing,
I see a benefit with this strategy for regular variables. However, when
the results are held by a class, the opposite seems to be the case.
Comments?
On Fri, 2014-02-14 at 17:47 -0800, David Winsemius wrote:
On Feb 13, 2014, at 11:36 AM, Ross Boylan wrote:
If R changes from 3.0.1 to 3.0.2, or more generally from m.n.p to m.n.q,
is it necessary to refresh libraries to match the version, e.g., with
update.packages(checkBuilt=TRUE, ask
(f=function(x) 2*x))
a$f(10)
[1] 30
b - foo()
b$f(10)
[1] 20
Ross Boylan
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide
. But I'm not sure.
I'm interested in Unix as well as Windows.
Thanks.
Ross Boylan
[[alternative HTML version deleted]]
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PLEASE do read the posting guide http
, Martin Morgan wrote:
Hi Ross --
On 01/23/2014 05:53 PM, Ross Boylan wrote:
[Apologies if a duplicate; we are having mail problems.]
I am trying to understand the circumstances under which R makes a copy
of an object, as opposed to simply referring to it. I'm talking about
what goes
)))
!+ bar(x=acoef)})
gc()
used (Mb) gc trigger(Mb) max used(Mb)
Ncells 2652191 141.74170209 222.84170209 222.8
Vcells 839752699 6406.9 1711485496 13057.6 1711485493 13057.6
# + 305 Mb
Thanks.
Ross Boylan
P.S. I also tried posting this from
S4
1 656044195 708 738 23935
# by eye, the only change is raw, from 735 to 738.
R 3.0.1 running on Debian GNU/Linux squeeze.
Ross Boylan
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On Fri, 2013-12-27 at 16:47 -0600, Hadley Wickham wrote:
For your original case, you may find it more useful to do memory +
line profiling (e.g. as visualised by
https://github.com/hadley/lineprof) to figure out what's going on.
Hadley
I've been trying memory and line profiling, but
On Thu, 2013-12-19 at 20:37 -0500, Duncan Murdoch wrote:
On 13-12-19 6:37 PM, Ross Boylan wrote:
My code seems to be spending most of its time in assignment statements,
in some cases simple assignment of a model frame or model matrix.
Can anyone provide any insights into what's going
than a vanilla data frame?
I thought assignment, given R's lazy copying behavior, was essentially
resetting a pointer, and so should be fast.
Or maybe the time is going to garbage collecting the previous contents
of the slots?
Ross Boylan
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Can anyone recommend a good way to add tables?
Ideally I would like
t1 - table(x1)
t2 - table(x2)
t1+t2
It t1 and t2 have the same levels this works fine, but I need something
that will work even if they differ, e.g.,
t1
1 2 4 5
2 1 1 1
t2 - table(c(10, 11, 12, 13))
t1+t2 # apparently
Answering myself...
On Mon, 2013-12-09 at 15:59 -0800, Ross Boylan wrote:
Can anyone recommend a good way to add tables?
For count data, which were my main concern, it looks as if tabulate with
nbins will work. I'm not sure how this works with a cross-classifying
factor, which I will also need
9, 2013, at 4:09 PM, Ross Boylan r...@biostat.ucsf.edu wrote:
Answering myself...
On Mon, 2013-12-09 at 15:59 -0800, Ross Boylan wrote:
Can anyone recommend a good way to add tables?
For count data, which were my main concern, it looks as if tabulate with
nbins will work. I'm not sure
On Mon, 2013-12-09 at 16:09 -0800, Ross Boylan wrote:
Answering myself...
On Mon, 2013-12-09 at 15:59 -0800, Ross Boylan wrote:
Can anyone recommend a good way to add tables?
For count data, which were my main concern, it looks as if tabulate with
nbins will work. I'm not sure how
Suppressing the intercept and contr.sum coding are not quite working as
I expect:
mf - data.frame(A=C(factor(c(a, b, c)), contr.sum))
mm - model.matrix(~0+A, data=mf)
mm
Aa Ab Ac
1 1 0 0
2 0 1 0
3 0 0 1
What I expect (and want) is
A1 A2
1 10
2 01
3 11
When I do
On Tue, 2013-09-17 at 12:06 -0700, Ross Boylan wrote:
Saving and loading data is roughly doubling memory use. I'm trying to
understand and correct the problem.
Apparently I had the process memories mixed up: R1 below was the one
with 4G and R2 with 2G. So there's less of a mystery. However
solution?
If I did myboth - list(r4, sflist) and
save(myboth, file=myfile)
would that be enough to keep the objects together? Judging from the
size of the file, it seems not.
Even if the myboth trick worked it seems like a kludge.
Ross Boylan
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On Tue, 2013-09-17 at 14:39 -0500, luke-tier...@uiowa.edu wrote:
At this point R's serialization format only preserves sharing of
environments; any other sharing is lost. Changing this will require an
extensive rewrite of serialization. It would be useful to have this,
especially as we are
(DESCRIPTION isn't the only one) have also caused trouble for
git
(even on Windows 7), since it thinks they are binary.
Any advice about what to do?
I'm reluctant to change the format of the files because it's not my
package.
Ross Boylan
__
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, will survive email; I stripped them out of the subject line.
The files (DESCRIPTION isn't the only one) have also caused trouble for git
(even on Windows 7), since it thinks they are binary.
Any advice about what to do?
I'm reluctant to change the format of the files because it's not my package.
Ross
of the term.labels match the order of columns for
factors in a terms object? The documentation says the model.matrix
assign attribute uses the ordering of terms.labels.
If anyone can tell me if this approach is reliable, or of one that is, I would
appreciate it.
Ross Boylan
Proposed function
On 4/17/2013 5:18 AM, Kevin Wright wrote:
On Tue, Apr 16, 2013 at 4:33 PM, Jim Lemon j...@bitwrit.com.au wrote:
On 04/17/2013 03:25 AM, Sarah Goslee wrote:
The final point does relate to Excel and any application that hides what is
going on to the casual observer. I will treasure this URL to
The problem was that my formula had 2 ~ in it. It also had a lot of
duplicate terms, but by themselves they don't cause trouble.
Ross
On 4/4/2013 5:30 PM, Ross Boylan wrote:
Over a decade ago there was a problem with model.frame when the
variable names were long:
https://stat.ethz.ch
.
However, changing these within the program might be workable.
Ross Boylan
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] 9.094947e-13
# historyN has a temp of N
BTW the values of the objective function have their sign reversed to
make it a maximization problem.
Ross Boylan
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PLEASE do read
glmmPQL (in MASS)
lme4
gee
I think lme4 is what I want, despite the title and the Social
Science task page.
Ross Boylan
P.S. Zero inflated models would be nice too.
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, the candidates include at least
nlme
glmmPQL (in MASS)
lme4
gee
I think lme4 is what I want, despite the title and the Social Science
task page.
Ross Boylan
P.S. Zero inflated models would be nice too.
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https
I am tweaking an R package for which I have the source; the relevant code
is in R not C. I'm making changes to the package code.
What is the best workflow for doing this? I recall the advice used to be
to remove the NAMESPACE during development, but I don't think this is
possible anymore.
For
On Mon, 2013-01-14 at 13:08 -0800, Ross Boylan wrote:
Is there an easy way to identify all the functions called as a result of
invoking a function? Getting the calling hierarchy too would be nice,
but is definitely not essential.
I'm trying to understand someone else's package, which
is not active.
Thanks.
Ross Boylan
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R 2.15.2 installed as a regular user on Windows 7.
Three issues:
1. There is a start menu item for R 2.15.2 Help that opens a local web
page. If I click on packages, then base, then abbreviate I get
Firefox can't find the file at
Thanks to Duncan for all his help. I have one tip to pass on.
On 1/11/2013 10:34 AM, Duncan Murdoch wrote:
On 11/01/2013 12:49 PM, Ross Boylan wrote:
R 2.15.2 installed as a regular user on Windows 7.
Three issues:
1. There is a start menu item for R 2.15.2 Help that opens a local web
page
R CMD check tells me
* checking R code for possible problems ... NOTE
agexact.fit.rds: ... may be used in an incorrect context: ‘optim(init,
agfitfn, ...)’
Warning: anonymous: ... may be used in an incorrect context: ‘optim(init,
agfitfn, ...)’
Can anyone tell me what this message means? My
agfitfn() is a function of beta only, just lose the ...
argument, and your worries
will vanish.
cheers,
Rolf Turner
On 19/07/11 12:48, Ross Boylan wrote:
R CMD check tells me
* checking R code for possible problems ... NOTE
agexact.fit.rds: ... may be used
Now available on CRAN.
Package: mspath
Title: Multi-state Path-Dependent Models in Discrete Time
Description: Functions for fitting path-dependent (non-Markov)
multi-state models to categorical processes observed at arbitrary
times, optionally with misclassified responses, and covariates on
I just installed 2.10 on XP; ESS is my primary interface.
I seem to be able to access all the help files; under 2.8.1 I was having
seemingly random problems accessing some help topics (including one day
I could and a few days later I couldn't, and vice-versa). That's good.
I noticed a few
On Wed, 2009-10-28 at 19:03 -0400, Duncan Murdoch wrote:
Second, install.packages(intervals) produced the usual line about
selecting a mirror, but no selection list popped up. It just sat
there
until I interrupted the session and reentered the command with a
pre-specified repos. I
On Sat, 2009-10-24 at 18:47 +0200, Uwe Ligges wrote:
Ross Boylan wrote:
I notice that the intervals package indicates a dependence on R =
2.9.0. Is there some feature of R 2.9 that intervals depends on, or
might it work with R 2.7.1, which I am running?
Don't know, but you could try
I notice that the intervals package indicates a dependence on R =
2.9.0. Is there some feature of R 2.9 that intervals depends on, or
might it work with R 2.7.1, which I am running?
Thanks.
Ross Boylan
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https
:
python-rpy1.0.3-2
Python 2.5.2
R 2.7.1
rpy2 is not available in Lenny, though it is in development versions of
Debian.
Ross Boylan
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PLEASE do read
boundary.
This was on Debian Lenny:
python-rpy1.0.3-2
Python 2.5.2
R 2.7.1
rpy2 is not available in Lenny, though it is in development
versions of
Debian.
Ross Boylan
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, if not money, even if
users are motivated.
Ross Boylan
On Thu, 2009-07-16 at 17:40 -0400, Kel Lam wrote:
My institute has been heavily dependent on SAS for the past while, and
SAS is starting to charge us a very deep amount for license renewal.
Since we are a non-profit organization that is definitely
8
[3,]309
Is there a better way?
Ross Boylan
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for any help.
Ross Boylan
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On Wed, 2008-02-13 at 11:18 +0100, Peter Dalgaard wrote:
Berwin A Turlach wrote:
G'day Peter,
On Wed, 13 Feb 2008 08:03:07 +0100
Peter Dalgaard [EMAIL PROTECTED] wrote:
Ross Boylan wrote:
In the following example, the inner evaluation pulls in the global
value
In the following example, the inner evaluation pulls in the global value
of subset (a function) rather than the one I thought I was passing in (a
vector). Can anyone help me understand what's going on, and what I need
to do to fix the problem?
f0 - function(formula, data,
On Sat, 2007-11-17 at 09:51 -0800, Ben Bolker wrote:
Ross Boylan wrote:
I have a data frame reading that includes a logical variable OLT
along with response variable Reading and predictor True (BOTH are
numeric variables; it's True as in the true value).
When I suppress
FALSE
R 2.5.1-2 on Debian GNU/Linux, running inside ESS.
--
Ross Boylan wk: (415) 514-8146
185 Berry St #5700 [EMAIL PROTECTED]
Dept of Epidemiology and Biostatistics fax: (415) 514-8150
University of California, San
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