[R] help on proportions

2013-01-31 Thread Srinivas Iyyer
Hi: Apologies for asking the following question. As this may sound very basic and stupid for this forum , I honestly do not know how to solve it and I do not have a teacher who can help me understand.   I have list of genes (200) that are involved in a particular process and I call this as a 

[R] re-arranging rows in data frame

2012-03-26 Thread Srinivas Iyyer
Hi: sorry for asking simple question (not simple for me though). I have a data frame something like this: ExpName Identifier value MM1-x1 GSK 0.02 MM1-x1 GSK2 0.001 MM1-x1 GSK3 0.04 MM1-x1 GSK4 0.1 MM1-X2 GSK 0.4 MM1-X2 GSK2 0.1 MM1-X2 GSK4 0.002 MMX-X3 GSK 0.4 MMX-X3 GSK2 0.23 I am

[R] help with loops

2011-08-11 Thread Srinivas Iyyer
hi I need help with list object. I have a list object a - c('apple','orange','grape') b - c('car','truck','jeep') c - list(a,b) names(c) - c('fruit','vehicle') c $fruit [1] apple orange grape $vehicle [1] car truck jeep I want to write all the elements of this list in one object

Re: [R] help with loops

2011-08-11 Thread Srinivas Iyyer
Thank you. that was very easy. -srini --- On Thu, 8/11/11, R. Michael Weylandt michael.weyla...@gmail.com wrote: From: R. Michael Weylandt michael.weyla...@gmail.com Subject: Re: [R] help with loops To: Srinivas Iyyer srini_iyyer_...@yahoo.com Cc: r-help@r-project.org Date: Thursday, August 11

[R] finding unique and max value from a data.frame

2008-10-23 Thread Srinivas Iyyer
Hi group, How can I identify an element with max value among duplicated elements all in a data frame Example: x1 x1 x2 1 a 4 2 b 3 3 c 2 4 a 1 5 c 2 6 f 3 7 g 4 8 f 5 I want to be able to get a data frame with all unique(x1) with max value x1 x2 1 a 4 2 b 3 3 c 2

Re: [R] finding unique and max value from a data.frame

2008-10-23 Thread Srinivas Iyyer
a 4 2 b 3 3 c 2 4 a 1 5 c 2 6 f 3 7 g 4 8 f 5 aggregate(x$x2, list(x$x1), max) Group.1 x 1 a 4 2 b 3 3 c 2 4 f 5 5 g 4 On Thu, Oct 23, 2008 at 8:30 PM, Srinivas Iyyer [EMAIL PROTECTED] wrote: Hi group, How can I identify

[R] merging data frames

2008-05-16 Thread Srinivas Iyyer
Dear group, I have 3 different data frames. I want to merge all 3 data frames for which there is intersection. Say DF 1 and DF2 has 100 common elements in Column 1. DF3 does not have many intersection either with DF1 or with DF2. For names in column 1 not present in DF3 I want to introduce

[R] creating a list of lists from a data frame

2008-03-27 Thread Srinivas Iyyer
Dear group, I have a dataframe (x). (4 rows, 3 columns for example) I want to create a master list (my_list) from data frame. I want each row of x to be a list. I tried 3 different ways: writing a loop, using apply, and going through each row. Going through each row works for me. since I

[R] Converting a data frame with values into a matrix/

2008-03-12 Thread Srinivas Iyyer
Dear Group, I have a data frame like the following: x - c(Mike,A,0.01) x1 - c(Carl,A,0.2) x2 - c(Gene,C,0.3) x3 - c(James,A,-0.3) x4 - c(Dough,B,0) xx - rbind(x,x1,x2,x3,x4) colnames(xx)-c(Name,Class,NES) xx -as.data.frame(xx) xx Name Class NES x Mike A 0.01 x1 Carl A 0.2 x2

Re: [R] Converting a data frame with values into a matrix/

2008-03-12 Thread Srinivas Iyyer
--- Henrique Dallazuanna [EMAIL PROTECTED] wrote: Perhaps in this case: noquote(with(xx, tapply(NES, list(Class, Name), paste))) On 12/03/2008, Srinivas Iyyer [EMAIL PROTECTED] wrote: Dear Group, I have a data frame like the following: x - c(Mike,A,0.01) x1 - c(Carl,A,0.2

Re: [R] subset list based on logical within element flag

2008-03-12 Thread Srinivas Iyyer
Hi I have the smililar question. I have a list: my_list - list(name=Fred, wife=Mary, no.children=3, child.ages=c(4,7,9)) my_list $name [1] Fred $wife [1] Mary $no.children [1] 3 $child.ages [1] 4 7 9 Now I want to search Fred and get attribute of that value which is 'name'. how do I

[R] Filling data frame data into a matrix - please help

2008-01-24 Thread Srinivas Iyyer
Dear group, I have a data.frame (d1) with various elements and a matrix (m1) created with NA (or 1s). I want to read each row,column in d1 and fill its numeric value in m1. Could some one help me because I have 130K rows and 500 column data.frame object and I was told that a for loop will take a

Re: [R] Filling data frame data into a matrix - please help

2008-01-24 Thread Srinivas Iyyer
Dallazuanna [EMAIL PROTECTED] wrote: Try this: d1 - data.frame(d1) d1$V3 - as.numeric(as.character(d1$V3)) xtabs(V3 ~ r1+c1, data=d1) You can substitute 0 with NA: d1.tb - xtabs(V3 ~ r1+c1, data=d1) d1.tb[d1.tb==0] - NA On 24/01/2008, Srinivas Iyyer [EMAIL PROTECTED] wrote

[R] List operations in R

2007-11-29 Thread Srinivas Iyyer
hello: I am very confused when it comes to list operations in R. I seek help in the following problem. I have two different vectors myIDs - a character vector with no names to their elements x2 - another character vector derived from unlisting a list where an element has both a name and