?pairs
On Thu, Jun 27, 2013 at 2:48 AM, Meesters, Aesku.Kipp Institute
meest...@aesku-kipp.com wrote:
Hi,
I would like to display inter-parameter scatter plots like those with the
corrgram package (see upper triangle here:
http://www.statmethods.net/advgraphs/images/corrgram2.png ), just
On Mon, Jun 3, 2013 at 11:37 AM, Simon Zehnder szehn...@uni-bonn.de
... [Some not minimal, self contained, reproducible code]...
Data simulation and thecreation of startpar works fine, but the parameters
in res$par are always the start parameters. If I run the same commands
directly on the
On Wed, May 29, 2013 at 7:57 AM, Stefan Lüdtke slued...@gfz-potsdam.dewrote:
x=runif(100, 1, 2)
y=runif(100, 2, 4)
z=runif(100, 1, 4)
data_xyz=as.data.frame(cbind(x, y, z, a=rep(c(1:10), 10), b=rep(c(1:2),
each=50)))
custom.panel = function(x, y, z, subscripts, ...)
{
On Tue, May 14, 2013 at 10:05 AM, Michelle Morters
mm...@hermes.cam.ac.ukwrote:
Hi -
I would like the plot ordered by intercept.
One way will be to tweak the ?intervals.lmList object
require(nlme)
fm1 - intervals(lmList(distance ~ age | Subject, Orthodont))
fm2 - fm1[order(fm1[,2,1]),,]
Also combining the code for figures 6.5, 13.8 and 13.9 in the following link
http://lmdvr.r-forge.r-project.org/figures/figures.html
gets you there.
On Fri, Apr 19, 2013 at 8:38 AM, Barry Rowlingson
b.rowling...@lancaster.ac.uk wrote:
On Fri, Apr 19, 2013 at 3:13 PM, Lorenzo Isella
Hmmm... is this a (unknown or even a) bug ? Not sure this is what OP was
getting at and I haven't gone through the lattice docs to see if this is
mentioned, but, with unequal sizes the extended formula is not producing
what one (or at least I) might expect:
require(latticeExtra)
set.seed(4321) ;
Like this ?
xyplot(4:5~4:5, groups=4:5, lex = 5 ,
par.settings = simpleTheme(cex=10, pch=21, lwd=5),
auto.key=TRUE)
On Fri, Feb 8, 2013 at 6:46 AM, Karl Ove Hufthammer k...@huftis.org wrote:
Dear list members,
I can't figure out how get 'xyplot' or 'dotplot' in the 'lattice' package
to
On Fri, Feb 8, 2013 at 10:14 AM, David Winsemius dwinsem...@comcast.netwrote:
On Feb 8, 2013, at 8:55 AM, ilai wrote:
Like this ?
xyplot(4:5~4:5, groups=4:5, lex = 5 ,
par.settings = simpleTheme(cex=10, pch=21, lwd=5),
auto.key=TRUE)
And if I had used a more general search strategy
1) We don't have your previous email and I doubt anyone here committed your
code to memory
2) No offense but this post is still an eye sore. Actually I am guessing
even worse than the first because there is no working example. The idea is
to provide *minimal* code that reproduces the problem -
On Thu, Jan 31, 2013 at 2:13 PM, Wim Kreinen wkrei...@gmail.com wrote:
Hello,
I have a question about modelling via glm.
I think you are way off track. Either the data, glm, or both, are not what
you think they are.
I have a dataset
skn300.tab - structure(list(n = 1:97, freq = c(0L, 0L,
On Sat, Jan 26, 2013 at 10:26 AM, Tito de Morais Luis
luis.tito-de-mor...@ird.fr wrote:
Hi listers,
I want to make lattice plots xyplots with the indication of legends
inside each panel with only the points and the lines actually ploted
inside each given panel according to the group(ing)
plot(1)
legend('topleft',legend=expression(A,italic(A),bolditalic(A),Delta*italic(D)))
On Wed, Jan 23, 2013 at 9:45 AM, raz barvazd...@gmail.com wrote:
Hello,
I'm trying to add a symbol (Delta) to plot legend with text using
expression(paste()) but this disables the text.font that allows to
On Sun, Jan 20, 2013 at 1:59 AM, ronny ronny.recht...@evogene.com wrote:
Hi,
I am using levelplot, and would like remove from each panel (condition) its
unused x levels.
Uneven scales on categorical axes lead to distortion and a miss
representation (as in your example - the area for levels
On Wed, Jan 16, 2013 at 12:05 PM, Patrick Connolly
p_conno...@slingshot.co.nz wrote:
On Mon, 07-Jan-2013 at 10:21PM +1100, Roland Seubert wrote:
| Hello all,
|
| I would like to make a parallel coordinate plot with lattice. The
| plot should have vertical log scale axes, and should in
On Wed, Jan 16, 2013 at 12:46 PM, ilai ke...@math.montana.edu wrote:
Oops... That's
require(latticeExtra)
c(parallelplot(~ df_n, horizontal.axis = FALSE, scales=list(x = list(log =
TRUE))) ,
parallelplot(~ df_n, horizontal.axis = FALSE))
or you'll get the full printout of the two objects
str(x) ; str(y) reveals
#zoo series ...
# ..$ : chr [1:3] a c b ## HERE
# Index: Date[1:100], format: 2010-01-01 2010-01-02 2010-01-03
2010-01-04 ...
#'data.frame':99 obs. of 3 variables:
# $ ID : Factor w/ 3 levels a,b,c: ## HERE
# ...
#'
So change the
On Mon, Jan 7, 2013 at 11:52 AM, David Winsemius dwinsem...@comcast.netwrote:
If you are going that route you may want to look at the gridBase package.
Yes for mixing base and grid graphics but IMHO overkill here. Replacing
the last mtext line with
grid::grid.text('dependent B', 0.985 , 0.5
You could try
require(grid)
trellis.focus()
names(iris)[round(unlist(grid.locator()))]
trellis.unfocus()
cheers
On Tue, Dec 11, 2012 at 11:59 AM, Eric Stone eric.st...@temple.edu wrote:
Hi,
I'd like to be able to generate a splom plot in R and then use my mouse to
click on one of the
On Wed, Nov 28, 2012 at 11:37 AM, alexB alexandre.bud...@helsinki.fiwrote:
The error was generated by jags not R or R2Jags (wrong list). Regardless,
your problem is the prior loop is only 1:6
snip
for (i in 1:6) { b[i] ~ dnorm(0.0, 0.01)
# b[i] ~ dunif(-20, +20)
On Mon, Nov 26, 2012 at 5:33 AM, Florian Weiler fweile...@jhubc.it wrote:
Dear all,
I am using the book Generalized Linera Models and Extension by Hardin and
Hilbe (second edition, 2007) at the moment. The authors suggest that
instead of OLS models, the log link is generally used for
Specifying n 1 chains is not enough. You need some parallel backend. You
can use snow/snowfall or doMC (these are R libraries) for example. Maybe
others, google is your friend. Word of caution about doMC (maybe also
snowfall, never tested it), you might need to specify RNG (seed, sampler)
for each
On Mon, Nov 19, 2012 at 5:42 AM, AnjaM a.miren...@gmail.com wrote:
Using the mtcars dataset, how to define the grouping variable to be valid
only for the upper or lower panel?
The following doesn't work:
# Code start
Almost :
splom(~data.frame(mpg, disp, hp, drat, wt, qsec),
Errr... You could reshape to a long format data.frame but an arguably
easier way:
dimnames(array.3d) - list(lat= 1:7 , long = 1:11 , lev = 1:5) # not needed
just for clarity
levelplot(array.3d)
On Sat, Nov 17, 2012 at 9:36 PM, Tom Roche tom_ro...@pobox.com wrote:
summary: how to convert a 3D
On Fri, Nov 16, 2012 at 2:42 PM, Khan, Sohail skha...@nshs.edu wrote:
Thanks. But aggregate will work on rows or columns. I need to calculate
mean for subsets of rows in a matrix
I.E.
Indx x1 x2 x3 x4 x5 x6 x7 x8 x9
1 25 30 15
dotplot(variety ~ yield | year+ site, barley,
strip = function(...,which.given,factor.levels) {
if(which.given==2){
strip.default(which.given,factor.levels=substr(levels(barley$site), 1,
1),style=4,...)
}
else{
On Thu, Nov 8, 2012 at 12:14 PM, Rui Barradas ruipbarra...@sapo.pt wrote:
Hello,
If I understand it right, you can use the arrows() function with an angle
of 90 to get ci bars.
Using your data example, but with made up standard errors,
a=c(10,15)
b=c(20,24)
c=c(21,23)
hei=cbind(a,b,c)
On Fri, Oct 19, 2012 at 6:28 PM, Ali Tofigh alix.tof...@gmail.com wrote:
On Wed, Oct 17, 2012 at 4:08 PM, ilai ke...@math.montana.edu wrote:
On Wed, Oct 17, 2012 at 11:10 AM, Ali Tofigh alix.tof...@gmail.com
wrote:
## this works as intended with a mix of plot.new() and grid.newpage
pdf
On Wed, Oct 17, 2012 at 11:10 AM, Ali Tofigh alix.tof...@gmail.com wrote:
my problem is that I usually have no choice but to mix grid and base
graphics.
What does that have to do with the answer you got ? did you even try it ?
here it is (again) but this time mixing base+grid:
On Wed, Oct 10, 2012 at 4:56 AM, Pierrick Bruneau pbrun...@gmail.comwrote:
With the following code :
dat1 - matrix(nrow=4, ncol=2)
dat1[1,] - c(-2, 1)
dat1[2,] - c(-1.7, 0.9)
dat1[3,] - c(0.1, 0.6)
dat1[4,] - c(0.5, 0.5)
theplot - xyplot(V2 ~ V1, as.data.frame(dat1), pch=c(4,1,5,4))
On Wed, Oct 10, 2012 at 4:56 AM, Pierrick Bruneau pbrun...@gmail.comwrote:
With the following code :
dat1 - matrix(nrow=4, ncol=2)
dat1[1,] - c(-2, 1)
dat1[2,] - c(-1.7, 0.9)
dat1[3,] - c(0.1, 0.6)
dat1[4,] - c(0.5, 0.5)
theplot - xyplot(V2 ~ V1, as.data.frame(dat1), pch=c(4,1,5,4))
On Tue, Oct 9, 2012 at 11:42 AM, Rui Barradas ruipbarra...@sapo.pt wrote:
Hello,
Try
do.call(data.frame, by.list)
I don't think data.frame inside do.call works in this context. May need it
on the outside to do the job (Only OK here since there is no mixture of
numeric and character/factors
variable in the data.frame. Personal
preference maybe but that never made sense to me in the data frame
construct (even if it is just a list).
Cheers
str(by.list)
might help here.
-- Bert
On Tue, Oct 9, 2012 at 11:14 AM, ilai ke...@math.montana.edu wrote:
On Tue, Oct 9, 2012 at 11:42 AM
On Tue, Oct 9, 2012 at 1:26 PM, Ali Tofigh alix.tof...@gmail.com wrote:
Hi,
when using the grid package, I've come across this weird behaviour
pdf(test.pdf); plot.new(); grid.rect(gp = gpar(fill=blue));
plot.new(); grid.rect(gp = gpar(fill=blue)); dev.off()
The first page is filled
How about
require(coda)
data(line)
str(line)
cline - as.mcmc(do.call(rbind,line))
str(cline)
# Thus
HPDinterval(cline) # (or any FUN.mcmc)
sum(cline[,'alpha'] = median(cline[,'alpha']))/nrow(cline)
Cheers
On Thu, Oct 4, 2012 at 12:22 PM, NORRIS Paul p.nor...@ed.ac.uk wrote:
Dear all,
I'm
instead of horizontal.
Elaine
On Sat, Sep 29, 2012 at 12:28 PM, ilai ke...@math.montana.edu wrote:
Not sure why this is going wrong for you.
Copy paste AS IS the following to your console in the directory
containing for_lattice.csv
str(dataN - read.csv('for_lattice.csv')[,2:3])
dataN
On Sat, Sep 29, 2012 at 7:32 AM, ilai ke...@math.montana.edu wrote:
On Fri, Sep 28, 2012 at 11:03 PM, Elaine Kuo elaine.kuo...@gmail.comwrote:
Hello
Thanks again.
I got the attached graph
Unsure why the color is still inconsistent.
Please kindly share with your R version.
It is not my
On Fri, Sep 28, 2012 at 6:57 AM, Richard M. Heiberger r...@temple.eduwrote:
Elaine,
For panel.bwplot you see that the central dot and the outlier dots are
controlled by
the same pch argument.
??? I don't think so...
bwplot(rgamma(20,.1,1)~gl(2,10), pch=rep(17,2),
panel =
On Wed, Sep 26, 2012 at 3:11 PM, RCar ryan.carst...@utsouthwestern.eduwrote:
All,
Relatively new R user so this is probably an easy question to answer.
I am able to generate a cluster for my dataset using hclust() then ploting
the data with plot().
This results in an image with a dendrogram
You want array not list, as in
levelplot(array(rnorm(400,rep(1:4,each=100)),c(10,10,4)))
abind::abind is useful sometimes for binding preexisting matrices to
arrays.
Cheers
On Sun, Aug 26, 2012 at 5:57 AM, Jens Peter Andersen / Region Nordjylland
je...@rn.dk wrote:
Dear R-users,
My goal
?model.matrix
On Fri, Jul 27, 2012 at 11:32 AM, xuan zhao xuan.z...@sentrana.com wrote:
Hi All,
I want to turn a categorical array (array with factors) into a matrix with
dummy variables. like array=c(a,a,b,b,b) should be turned into:
a b
1 0
1 0
0 1
0 1
0 1
Do you know any way of
Maybe I'm missing something too but from your example seems like you are
looking for
xyplot(rnorm(12) ~ 1:12 , type=l,
scales=list(x=list(at=seq(2,12,2),labels=c(1, ' ', 3 , ' ' , 5 , ' ' ))),
par.settings=list(axis.components=list(bottom=list(tck=c(0,1)
See scales in ?xyplot and
(30,2,4),breaks=seq(0,1,.1),plot=F)$counts,
hist(rbeta(30,6,8),breaks=seq(0,1,.1),plot=F)$counts),
beside=T)
see str(hist(yourdata)) or ?hist
Cheers
Ilai
John Kane
Kingston ON Canada
-Original Message-
From: mb...@sun.ac.za
Sent: Tue, 26 Jun 2012 15:24:55 +0200
To: r-help@r
On Sat, Jun 16, 2012 at 2:11 AM, Stephen Eglen s.j.eg...@damtp.cam.ac.ukwrote:
R does a great job with the fine details regarding plots. e.g in the
following:
library(lattice)
y - -4:4/10
xyplot(y~1, las=1)
No. las is a parameter in base graphics ?par. It was simply ignored here:
You say median for each panel but tapply gets medians for each variety
(chartjunk IMHO). Regardless, *this case* has nothing to do with
panel.abline. Add print(median.values) to your panel function would have
hinted as to the missing piece.
# medians for each panel:
dotplot(variety ~ yield |
Untested because I don't have (use) winbugs and you didn't provide dat*.
But consider
a - 4 ; f - 6
list('a','f')
list(a,f)
list(a=a,f=f)
My guess is you wanted sp.data to be a named list, not a list of names...
HTH
On Wed, Jun 6, 2012 at 4:12 AM, Saana Isojunno
saana.isoju...@googlemail.com
don't really understand what you're after. Sorry.
Ilai
On Fri, Jun 1, 2012 at 12:53 AM, Akkara, Antony (GE Energy, Non-GE)
antony.akk...@ge.com wrote:
Hi iLai,
** **
What you showed below, almost same like I am also expecting.
** **
There is two matrix,
1
If you haven't done so you *must* read an Introduction to R. The only
reason this is a problem is Myarray is a character string, not a function
or expression to be evaluated. I think this will get you what you want
though:
# In the future use the output of ?dput to provide data to this list
?plot.trellis.
In general something like
mlp- levelplot(...
mhist- histogram(...
plot(mlp,split=c(1,2,1,2),more=T)
plot(mhist,split=c(1,1,1,2),more=F)
You will need to do some work on the padding and layout widths to get the
distances right (I assume the key is to be the x-axis of the
I'm confused (I bet David is too). First and last models are the
same, what do SE's have to do with anything ?
naive - glm(extra ~ group, data=sleep)
imputWrong - glm(extra ~ group, data=sleep10)
imput - glm(extra ~ group, data=sleep10,weights=rep(0.1,nrow(sleep10)))
Can't put my finger on it but something about your idea rubs me the
wrong way. Maybe it's that the tree depends on the hierarchical
clustering algorithm and the choice on how to trim it should be based
on something more defensible than avoid singletons. In this example
Hawaii is really different
On Tue, May 15, 2012 at 4:19 PM, Rich Shepard rshep...@appl-ecosys.com wrote:
On Tue, 15 May 2012, David L Carlson wrote:
David,
I have 130 plots to produce (30 chemicals un-transformed and three
transformations). The R console insists that I retype each of the 6 lines
(adding a
On Tue, May 8, 2012 at 9:32 AM, maxbre mbres...@arpa.veneto.it wrote:
and then with the superposition of relative average values to the boxplots,
i.e. something like:
panel.points(…, mean.values, ..., pch = 17)
Almost. You need to give panel.points the new x, and make sure the
right
Hi,
I think the issue is not respecting the groups but finding the
x-location of the center of bars in panel.barchart(groups,...). Don't
know about the memisc package, but doesn't look like it provides an
easy solution. This is how I do it:
Thank you for your example. I only skimmed it, but since both
solutions use nlevels and box.ratio it is no surprise we end up at the
same place (although I do think your g-median is nicer than my 3/4).
Thing is, I wouldn't call either of these simple... would be nice if
one could just query the
On Wed, Apr 25, 2012 at 6:14 AM, Patrick Hausmann
patrick.hausm...@covimo.de wrote:
Hello,
I am trying to get a new vector 'x1' based on the not NA-values in column
'a' and 'b'. I found a way but I am sure this is not the best solution. So
any ideas on how to optimize this would be great!
If
You need to do a little more work to add the components you want back
in. I think you want something like:
xyplot( Sepal.Length ~ Petal.Length, auto.key=T, data=iris,
par.settings = list(axis.line = list(col = 0)),scales=list(col=1,tck=c(1,0)),
panel=function(...){
lims -
On Tue, Apr 24, 2012 at 2:09 PM, steve_fried...@nps.gov wrote:
library(latticeExtra)
doubleYScale(hist(mydata, breaks=20, prob=T, xlim=c(-100, 2000),
plot.spdf(x), use.style=FALSE)
This does not work as doubleYScale expects histogram and densityplot, and
I'd like to use the plot.spdf
7:45 PM, ilai ke...@math.montana.edu wrote:
On Tue, Apr 24, 2012 at 2:09 PM, steve_fried...@nps.gov wrote:
library(latticeExtra)
doubleYScale(hist(mydata, breaks=20, prob=T, xlim=c(-100, 2000),
plot.spdf(x), use.style=FALSE)
This does not work as doubleYScale expects histogram
Duncan,
First off, I admit it is not clear to me what you are trying to
achieve and more importantly, why? by why I mean 1) I don't see the
advantage of writing one general panel function for completely
different situations (one/multiple smoothers, grouping levels etc.) 2)
your intended result as
Oops - that is reply all
On Fri, Apr 20, 2012 at 5:29 PM, David Winsemius dwinsem...@comcast.net wrote:
I'm a bit puzzled by this exchange. I know there is a 'panel.locfit', but
you two are spelling it differently. Can you explain why you are doing so?
Hi David,
Thanks for stepping in.
On Fri, Apr 20, 2012 at 8:15 PM, David Winsemius dwinsem...@comcast.net wrote:
Another puzzle. In the original posting there was this segment:
---
but gives an error message without par.settings if i want to add
panel.Locfit(x,y,nn= 0.9,lwd = c(1,2,3), ...)
Error
On Thu, Apr 19, 2012 at 2:55 AM, ce41188 stevelavr...@hotmail.com wrote:
Thank you for the reply.
The more I look at this, the more confused I become. I was wondering if you
could walk me through this a little more in detail, in particular the panel
method function of doing things. It may be
On Thu, Apr 19, 2012 at 2:30 AM, Duncan Mackay mac...@northnet.com.au wrote:
Hi
xyplot(y ~x|Farm,xx,
groups = Padd,
panel = panel.superpose,
panel.groups=function(x,y, ...){
panel.Locfit(x,y,...)
panel.xyplot(x,y,...)
On Wed, Apr 18, 2012 at 8:45 AM, slavrenz stevelavr...@hotmail.com wrote:
I would like to display with the xyplot() function
for several states. I will have a total of 6 plots, I need to plot the
points of one of the states in a different color than all the rest, such
that they can be more
On Wed, Apr 18, 2012 at 2:07 PM, Louis Plough lplo...@usc.edu wrote:
If you could lead me to an example with code, that would help me figure out
how to do it for my function
The states example in ?xyplot uses groups and subscripts in a panel function
I read it, but I guess I don't quite
Michael originally suggested ?outer. I think that was enough in this
case (no need for mv or sapply):
wlpk3 - outer(k3,wl,'+')
ln.phiDIC - log(k1)+k2/wlpk3
phiDIC- t(exp(ln.phiDIC))
colnames(phiDIC)- stations
str(phiDIC)
Cheers
On Thu, Apr 12, 2012 at 8:58 PM, R. Michael Weylandt
densityplot(~y|B, groups=A, data=dt,
plot.points=rug,
col=trellis.par.get(superpose.polygon)$col, alpha=.5,
panel=panel.superpose,
panel.groups=my.panel.densityplot)
Worked for me (i.e. semi-transparent superpose.polygon colors). Is
that not what
On Wed, Apr 11, 2012 at 7:16 AM, David Winsemius dwinsem...@comcast.net wrote:
On Apr 11, 2012, at 9:03 AM, David Winsemius wrote:
On Apr 11, 2012, at 6:28 AM, maxbre wrote:
hi, I just realised I want to go a little further in the control of the
chart
appearance and I would like to have
On Mon, Apr 9, 2012 at 12:40 PM, Jason Rodriguez
jason.rodrig...@dca.ga.gov wrote:
Hello, I have a graphics-related question:
I was wondering if anyone knows of a way to create a bar chart that is
colored with a three-part gradient that changes at fixed y-values. Each bar
needs to fade
On Sat, Apr 7, 2012 at 8:29 PM, wcheckle wchec...@jhsph.edu wrote:
Thank you David, the bwplot option does what I need:
snip
However, I am interested in also learning how to do it in xyplot as well. I
wasn’t able to follow the last two set of instructions
That was me. Sorry for any
On Sun, Apr 8, 2012 at 3:42 AM, Kaveh Vakili kaveh.vak...@ulb.ac.be wrote:
Hi all,
I have this problem with lattice that xyplot() won't draw some of my axis
labels if the type (i.e. the relation argument) of scales is set as free. For
example, in the plot below, I would want it to also
On Sun, Apr 8, 2012 at 11:40 AM, Vikram Chhatre
crypticline...@gmail.com wrote:
Hello -
I want to generate stacked plots with par(mfrow)) function. However,
my axis labels aren't showing.
Your mar (2) are too narrow. You could increase back to the default or
use the lines option in mtext to
ncol(matrix). Using
apply was suggested at some point by others, my comment was simply
that you failed to meet even that adjustment.
Cheers
On Fri, Apr 6, 2012 at 6:59 PM, ilai ke...@math.montana.edu wrote:
On Fri, Apr 6, 2012 at 4:02 PM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com
On Sat, Apr 7, 2012 at 11:16 AM, David Winsemius dwinsem...@comcast.net wrote:
xyplot(mortality ~ type, data=xdat,
panel=function(x,y){
panel.xyplot(x,y, jitter.x=TRUE)
panel.segments(x0=c(.9, 1.9, 2.9),
You might want to check out package {tikzDevice} and it's
documentation. In essence you turn your R plots to tikz-pgf so they
can be naturally incorporated into a beamer presentation. Colors, bg,
fonts etc. can now be controlled in your main latex doc. I find it
much more convenient, and nicer
I maybe missing something but this seems like an indexing problem
which doesn't require a loop at all. Something like this maybe?
(input-matrix(c(5,1,3,7,2,6,4,8),nc=2))
output - matrix(0,max(input),2)
output[input[,1],1] - 100
output[input[,2],2] - 100
output
Cheers
On Fri, Apr 6, 2012 at
On Fri, Apr 6, 2012 at 4:02 PM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
This works great:
Really ? surprising given it is the EXACT same for-loop as in your
original problem with counter i replaced by k and reorder to
matrix[!100]- 0 instead of matrix(0)[i]- 100
You didn't
On Thu, Apr 5, 2012 at 1:40 PM, Peter Meilstrup
peter.meilst...@gmail.com wrote:
Consider the data.frame:
df - data.frame(A = c(1,4,2,6,7,3,6), B= c(3,7,2,7,3,5,4), C =
c(2,7,5,2,7,4,5), index = c(A,B,A,C,B,B,C))
I want to select the column specified in 'index' for every row of 'df', to
get
On Tue, Apr 3, 2012 at 6:22 PM, Peter Ehlers ehl...@ucalgary.ca wrote:
On 2012-04-03 15:49, ilai wrote:
Try to plot the points first followed by vis.gam(...,type='contour',
color='bw', add=T) instead of vis.gam followed by points.
HTH
Or, if vis.gam gives you default scales that you wish
=10)
par(mar=c(5.1,2.1,4.1,4.1))
image(t(A),axes=F,col='transparent')
axis(1,at=seq(0,1,l=ncol(A)),labels=LETTERS[1:ncol(A)])
require(fields)
image.plot(t(A),add=T,legend.mar=3.1)
Cheers
- Original Message -
From: ilai ke...@math.montana.edu
To: David Lyon david_ly...@yahoo.com
Cc
On Wed, Apr 4, 2012 at 10:12 AM, Petr Savicky savi...@cs.cas.cz wrote:
On Wed, Apr 04, 2012 at 01:32:10PM +0200, paladini wrote:
Var1 - c((1,2), (7,8), (4,7))
Var2 - c((1,5), (3,88), (12,4))
Var3 - c((4,2), (6,5), (4,4))
DF - data.frame(Var1, Var2, Var3, stringsAsFactors=FALSE)
If you
Try to plot the points first followed by vis.gam(...,type='contour',
color='bw', add=T) instead of vis.gam followed by points.
HTH
On Tue, Apr 3, 2012 at 2:48 PM, Ravi Varadhan rvarad...@jhmi.edu wrote:
Hi,
Please see the attached contour plot (I am sorry about the big file). This
was
On Tue, Apr 3, 2012 at 7:25 PM, David Lyon david_ly...@yahoo.com wrote:
if I had a data file like this:
1.42 1.29 -0.13
1.46 1.34 -0.12
1.45 1.32 -0.13
1.36 1.26 -0.10
1.33 1.29 -0.04
I want to create a image plot like this:
data1-read.table(A)
image.plot(t(data1), axes=FALSE, xlab=NA,
On Sun, Apr 1, 2012 at 9:59 AM, michaelyb cel81009...@gmail.com wrote:
Basically I need to read the data from an external source using many R
commands.
The problem is that sometimes the source is empty, and I get a list with
empty values, and I need to substitute them by NA.
It is def. not
On Thu, Mar 29, 2012 at 3:04 AM, maxbre mbres...@arpa.veneto.it wrote:
snip
To answer your question:
- I did not put relation=’same’ because that is not what I want: i.e **for
each single panel** (in my case 4) I want to set the same limits for both x
and y axes (I want the diagonal line
To cbind, you don't need a loop
(M - matrix(1:50,nc=10))
c2way - combn(ncol(M),2)
MM - M[,c2way]
dim(MM) - c(nrow(M),nrow(c2way),ncol(c2way))
MM
c3way - combn(ncol(M),3)
MMM - M[,c3way]
dim(MMM) - c(nrow(M),nrow(c3way),ncol(c3way))
MMM
etc. etc.
Than you can (untested for icc) loop your
On Thu, Mar 29, 2012 at 9:27 AM, ilai ke...@math.montana.edu wrote:
Oops, sent to fast. A (maybe) clearer solution:
f - function(x,m){
cmway - combn(ncol(x),m)
xx - x[,cmway]
dim(xx) - c(nrow(x),nrow(cmway),ncol(cmway))
xx
}
f(M,3)
str(sapply(2:4,f,x=M))
And again lapply / apply , or even
On Wed, Mar 28, 2012 at 4:21 AM, maxbre mbres...@arpa.veneto.it wrote:
After a long and winding road (sorry but I'm a novice) I get to a final
result which is quite close to what I need;
nevertheless I would like to tweak a little further the xyplot
Without dput(mydata) you are the only one
On Wed, Mar 28, 2012 at 6:49 AM, Petr PIKAL petr.pi...@precheza.cz wrote:
What problem? Nabble is not available to all and here is not much to cook
from.
Indeed. Also the OP actually provided their own solution, just 5 more
minutes of googling to find ?sub.
bankoffer.3 -
On Wed, Mar 28, 2012 at 3:53 PM, Benton, Paul
hpaul.bento...@imperial.ac.uk wrote:
Hello all R-er,
I'm trying to run a resampling method on some data. The current method I have
takes 2+ days or a lot of memory . I was wondering if anyone has a better
suggestion.
Currently I take a matrix
On Wed, Mar 28, 2012 at 8:03 PM, Benton, Paul
hpaul.bento...@imperial.ac.uk wrote:
On Mar 29, 2012, at 1:41 AM, ilai wrote:
On Wed, Mar 28, 2012 at 3:53 PM, Benton, Paul
hpaul.bento...@imperial.ac.uk wrote:
Hello all R-er,
snip
## Then test if rho.A[1,1] come from the distribution
It is (at least for me) really unclear what the problem is, or how
it's related to mclapply.
You say
this works fine, except that what I want to get NA's in the return
positions that were not recalculated. then, I can write
newdata$y - ifelse ( is.na(olddata$y), mc.byselectrows( olddata,
On Sun, Mar 25, 2012 at 3:50 PM, stivi muhame...@wp.pl wrote:
Hello,
my question is if anyone has any good ideas how to create a Markov Chain
from ordered data. So, I have some sort of time series, and if value1
happens as time1 and value2 happens at time2 I record this as an update to
the
See 'box.3d' in trellis.par.get() :
wireframe(z ~ x*y, data = test,
scales=list(arrows=F),
par.settings = list(box.3d = list(col=NA)))
Note you can have some finer control:
wireframe(z ~ x*y, data = test,
scales=list(arrows=F),
par.settings = list(box.3d = list(col=c(1,2,NA,NA,3,NA,4,5,6)))
On Fri, Mar 23, 2012 at 2:07 PM, Bigelow, Seth W -FS sbige...@fs.fed.us wrote:
ilai/keren:
Thanks for your response. It's not the 3d bounding box that I wish to
eliminate, but the box that surrounds the whole figure and is drawn
automatically (I call this the outer box, in contrast
On Mon, Mar 19, 2012 at 7:56 AM, Jose Bustos Melo jbustosm...@yahoo.es wrote:
Hi everyone,
I'm trying to reduce the font size in the Y exe in this plot:
dotplot( bank ~ MV2007 + MV2009 , data = d, horiz = T,
par.settings = list( superpose.symbol = list( pch = 21, fill = c(
lightblue,
You want to assign your call to boxplot as an object that contains the
plot information
set.seed(1)
b - matrix(rgamma(100,(1:4)/2,.5),nc=4)
(bxp - boxplot(b))
Now you can use the info in bxp for placement, e.g.:
text(1:length(bxp$names),bxp$stats[3,],round(bxp$stats[3,],2),pos=3)
By the way,
On Wed, Mar 14, 2012 at 9:47 PM, Alex Miller alexjcmil...@gmail.com wrote:
Dear R Users,
I am trying to plot a matrix (a Digital Elevation Model) using wireframe
[lattice] and color that matrix based on a separate/independent matrix of
the same resolution
This makes no sense. the values in
On Wed, Mar 14, 2012 at 8:56 AM, Thomas Hoffmann
hoffm...@giub.uni-bonn.de wrote:
Hi all,
I still fail to plot an axis title with the following expression:
plot(0,xlab=expression('(SOC [' * kgm^{-2} * '])' * ^{-2}))
the xlab should look like: (SOC [kgm^2])^0.25
with an out bracket and a
You could try doing it without a loop (.C or other):
(rgnsnp - merge(region,snps))
(rgnsnp[with(rgnsnp,STOP=POS POS = START),])
Here is my test for merge+search on 100k/200k:
fdf1 - data.frame(chr=1:10,p=runif(10),d=sample(10))
fdf2 -
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