You may need to use smaller data. Anyway, read the Posting Guide, which says
for contributed packages to contact the package maintainer
?maintainer
On May 28, 2021 11:55:04 AM PDT, Gossaye Hailu wrote:
>I am doing phylogenetic analysis of ecological community data set using
>Picante package to
Please see the posting guide linked below. Questions about nonstandard
packages are generally off topic here. You should probably do as the pg
recommends and contact the maintainer, who you can find by the maintainer()
function.
Bert
On Sat, May 29, 2021, 10:16 AM Gossaye Hailu wrote:
> I am
I am doing phylogenetic analysis of ecological community data set using
Picante package to find out PD, MPD, MNTD
I have run the following arguments
library(picante)
>tree4.phylotree<-read.tree("phylojune2016.edit.phy")
>tree4.phy<-read.csv("june2016.matrix.csv",sep=",",header = TRUE,row.names
=
On 17/06/2014 04:27, Mohan Radhakrishnan wrote:
Hi,
I am not relating this to shiny but this error was thrown by my
shiny server code. Does it have anything to do with low memory settings ?
No. It is an error in the C code in a package you are using which has
corrupted R internals
Hi,
I am not relating this to shiny but this error was thrown by my
shiny server code. Does it have anything to do with low memory settings ?
I am spawning a JVM using rJava. That JVM is using the attach API to
connect to another JVM
Thanks,
Mohan
Error: C stack usage 140730070087404 is
...@gmail.com [mailto:jgrn...@gmail.com] On Behalf Of Jonathan
Greenberg
Sent: Saturday, September 28, 2013 10:51 AM
To: William Dunlap
Cc: r-help
Subject: Re: [R] Error: C stack usage is too close to the limit when using
list.files()
Thanks all -- ok, so the symbolic link issue is a distinct
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf
Of William Dunlap
Sent: Friday, September 27, 2013 12:56 PM
To: Jonathan Greenberg; r-help
Subject: Re: [R] Error: C stack usage is too close to the limit when using
list.files()
Do
On 28-09-2013, at 19:51, Jonathan Greenberg j...@illinois.edu wrote:
Thanks all -- ok, so the symbolic link issue is a distinct
possibility, but fundamentally doesn't solve the issue since most
users will have symbolic links on their machines SOMEPLACE, so a full
drive scan will run into
of list.files().
Bill Dunlap
Spotfire, TIBCO Software
wdunlap tibco.com
-Original Message-
From: jgrn...@gmail.com [mailto:jgrn...@gmail.com] On Behalf Of Jonathan
Greenberg
Sent: Saturday, September 28, 2013 10:51 AM
To: William Dunlap
Cc: r-help
Subject: Re: [R] Error: C stack usage
R-helpers:
I'm running a file search on my entire drive (Mac OS X) using:
files_found -
list.files(dir=/,pattern=somepattern,recursive=TRUE,full.names=TRUE)
where somepattern is a search pattern (which I have confirmed via a
unix find / -name somepattern only returns ~ 3 results).
I keep
Jonathan Greenberg jgrn at illinois.edu writes:
R-helpers:
I'm running a file search on my entire drive (Mac OS X) using:
files_found -
list.files(dir=/,pattern=somepattern,recursive=TRUE,full.names=TRUE)
where somepattern is a search pattern (which I have confirmed via a
unix find /
Ben:
I'd like to avoid using that (previous version of my code solved it in
that way) -- I would like cross-platform compatibility and I am pretty
sure, along with Windows, vanilla Macs don't come with find either
unless XCode has been installed.
Is the list.files() code itself recursive when
, 2013 12:13 PM
To: r-help
Subject: [R] Error: C stack usage is too close to the limit when using
list.files()
R-helpers:
I'm running a file search on my entire drive (Mac OS X) using:
files_found -
list.files(dir=/,pattern=somepattern,recursive=TRUE,full.names=TRUE)
where somepattern
On 27-09-2013, at 21:50, Jonathan Greenberg j...@illinois.edu wrote:
Ben:
I'd like to avoid using that (previous version of my code solved it in
that way) -- I would like cross-platform compatibility and I am pretty
sure, along with Windows, vanilla Macs don't come with find either
unless
Dunlap
Sent: Friday, September 27, 2013 12:56 PM
To: Jonathan Greenberg; r-help
Subject: Re: [R] Error: C stack usage is too close to the limit when using
list.files()
Do you have some symbolic links that make loops in your file system?
list.files() has problems with such loops and find does
R-help,
I 'm trying to optimize a model to data using log-likelihoods
but I encounter the following error message:
l= c(49.4, 57.7,64.8,70.9,78.7,86.6,88.3,91.6,99,115)
t=3:12
fn - function(params, l=l, t=t) {
Linf - params[1]
k - params[2]
-Original Message-
From: r-help-boun...@r-project.org
[mailto:r-help-boun...@r-project.org] On Behalf Of Luis Ridao Cruz
Sent: Monday, September 14, 2009 6:24 AM
To: R-help
Subject: [R] Error: C stack usage is too close to the limit
R-help,
I 'm trying to optimize a model
I can't find any file called Rinterface.h on my computer. What folder is it
supposed to be in?
you can find the R_CStackLimit in Rinterface.h
after that you will know how to use it!
Apparently the way to deal with this error message is to set
R_CStackLimit = (uintptr_t)-1
I tried typing this
you can find the R_CStackLimit in Rinterface.h
after that you will know how to use it!
ÔÚ2009-05-21?17:53:54£¬anon36?ano...@yahoo.com?дµÀ£º
Apparently?the?way?to?deal?with?this?error?message?is?to?set
??R_CStackLimit?=?(uintptr_t)-1
Apparently the way to deal with this error message is to set
R_CStackLimit = (uintptr_t)-1
I tried typing this in the R console, but it says Error: object
R_CStackLimit not found.
So where do I type it? In one of the initialization files that R uses when
it starts up?
I can't find the answer
Hi,
I encountered an error of type 'C stack usage is too close to the limit', and
could not find information so far to get unstuck. The error occurs when
subsetting columns from a data frame (see stack trace below). However if I
step through the sequence of code found in the 'topmost'
Hi,
I encountered an error of type 'C stack usage is too close to the limit', and
could not find information so far to get unstuck. The error occurs when
subsetting columns from a data frame (see stack trace below). However if I
step through the sequence of code found in the 'topmost'
Hello,
Does anyone know in general what causes the following error:
Error: C stack usage is too close to the limit
I rewrote some R code that worked fine to be more streamlined, and now I
get this error. I don't really know where to start to fix the problem.
Thanks,
John
Lately R has been behaving strange on my Linux (Ubuntu 7.10) machine,
with occasional segfaults. Today something else and reproducible
happened:
If I type the code below (meant for calibrating data), I get the error
message that the C stack usage is too close to the limit.
calcurve -
Your function has 4 parameters and you are only calling with two. The
first statement:
caldist - function(cage=Cage, error=Error, sdev=Sdev, times=Times, By=By)
{
theta - seq(min(calcurve[,1]), max(calcurve[,1]), by=By);
use By which is not defined.
On Jan 26, 2008 4:29 PM, Maarten Blaauw
Sorry, indeed I forgot to put some of the factors in the code. Here it
is again, now updated:
calcurve - cbind(1:2e4, 1:2e4, rep(100, length=2e4));
caldist - function(cage, error, sdev=2, times=5, By=1)
{
calcurve - calcurve[which((calcurve[,2]+calcurve[,3]) =
cage-(times*error)),];
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