Re: [R] Loading large tar.gz XenaHub Data into R

Thank you both for your advice! The z <- readLines(gzcon(url(" https://tcga.xenahubs.net/download/TCGA.GBMLGG.sampleMap/HumanMethylation450.gz;)), ) command worked out nicely On Thu, Aug 1, 2019 at 6:47 PM William Dunlap wrote: > By the way, instead of saying only that there were warnings, it

Re: [R] Loading large tar.gz XenaHub Data into R

By the way, instead of saying only that there were warnings, it would be nice to show some of them. E.g., > z <- readLines(" https://tcga.xenahubs.net/download/TCGA.GBMLGG.sampleMap/HumanMethylation450.gz ") [ Hit control-C or Esc to interrupt, or wait a long time ] There were 50 or more warnings

Re: [R] Loading large tar.gz XenaHub Data into R

These are gzipped files, I assume. So see ?gzfile and associated info for how to open a gzip connection and read from it. You may also prefer to search (e.g. at rseek.org) on "read a gzipped file" or similar for possible alternatives. Of course, if they're not gzipped files, then ignore the

[R] Loading large tar.gz XenaHub Data into R

Good evening, I am attempting to load the following Xena dataset https://tcga.xenahubs.net/download/TCGA.GBMLGG.sampleMap/HumanMethylation450.gz I am trying to unpack the dataset and read it into R as a table, but due to the size of the file, I am having some trouble. The following are the