[R] heatmap with RNA-Seq data

Hi all, new to this forum I'm try to using R to draw a heatmap of my RNA-seq data before doing that I did a log2 transformation of my data and produce a lot -inf in the matrix when I try to use the heatmap function, it seems can not deal with the -inf so I was wondering how to deal with these

Re: [R] heatmap with RNA-Seq data

On Jul 18, 2011, at 3:34 PM, rebioman wrote: Hi all, new to this forum I'm try to using R to draw a heatmap of my RNA-seq data before doing that I did a log2 transformation of my data and produce a lot -inf in the matrix when I try to use the heatmap function, it seems can not deal with

Re: [R] heatmap with RNA-Seq data

That what I did, I replaced the -infinite with lowest number I got from my data set. I'm not sure this kind of data manipulation is allowed in a publication -- View this message in context: http://r.789695.n4.nabble.com/heatmap-with-RNA-Seq-data-tp3676207p3676280.html Sent from the R help