dpie...@ucsd.edu
Sent: Monday, September 15, 2014 7:00 PM
To: Hernan A. Moreno Ramirez
Cc: r-help@r-project.org
Subject: Re: [R] ncdf size error
On Mon, Sep 15, 2014 at 4:20 PM, Hernan A. Moreno Ramirez
hmore...@uwyo.edu wrote:
Hi I am using both ncdf and ncdf4 libraries and with both I keep
(ncdf)
... rest of example omitted ...
Hi Hernan,
The file you are trying to make is violating size constraints imposed
by the netcdf library/R interface, which is 2 GB in the R ncdf
package. To get around this switch to the R ncdf4 package, which is
the replacement for the ncdf package (I
davidwilliampie...@gmail.com on behalf
of David W. Pierce dpie...@ucsd.edu
Sent: Tuesday, September 16, 2014 2:21 PM
To: Hernan A. Moreno Ramirez
Cc: r-help@r-project.org
Subject: Re: [R] ncdf size error
On Tue, Sep 16, 2014 at 11:36 AM, Hernan A. Moreno Ramirez
hmore...@uwyo.edu wrote:
Sure, here
/
From: davidwilliampie...@gmail.com davidwilliampie...@gmail.com on behalf of
David W. Pierce dpie...@ucsd.edu
Sent: Tuesday, September 16, 2014 2:21 PM
To: Hernan A. Moreno Ramirez
Cc: r-help@r-project.org
Subject: Re: [R] ncdf size error
On Tue, Sep 16, 2014 at 11:36
Hi I am using both ncdf and ncdf4 libraries and with both I keep getting the
same error: Error in R_nc_enddef: NetCDF: One or more variable sizes violate
format constraints. Error in R_nc_sync: NetCDF: Operation not allowed in
define mode. This happens when I try to create.ncdf() a file with more
On Mon, Sep 15, 2014 at 4:20 PM, Hernan A. Moreno Ramirez
hmore...@uwyo.edu wrote:
Hi I am using both ncdf and ncdf4 libraries and with both I keep getting the
same error: Error in R_nc_enddef: NetCDF: One or more variable sizes violate
format constraints. Error in R_nc_sync: NetCDF: Operation
Hello,
I have a problem writing a variable to an existing file.
Below is a part of my script and how it fails.
I can't find create.var.ncdf in help
Thanks for any help.
Mark
nc - open.ncdf(ncname, readunlim=FALSE, write=TRUE )
missing - 1.e+30
xdim - nc$dim[[west_east]]
ydim -
On 2012-08-21 11:02, m p wrote:
Hello,
I have a problem writing a variable to an existing file.
Below is a part of my script and how it fails.
I can't find create.var.ncdf in help
You probably want 'create.ncdf'.
Peter Ehlers
Thanks for any help.
Mark
nc - open.ncdf(ncname,
Tom Roche Mon, Jan 9, 2012 at 3:54 PM,
I need to copy most of a source file, modifying only part, and to
write a target file.
David William Pierce Thu, 12 Jan 2012 09:13:53 -0800
I'd advise against doing this. I think it's the wrong approach.
Better to use 'cp' to make a bit-for-bit copy
Hi Tom,
a few answers to your questions:
On Mon, Jan 9, 2012 at 3:54 PM, Tom Roche tom_ro...@pobox.com wrote:
:-) I guess I should have explained: I need to copy most of a source
file, modifying only part, and to write a target file. So my motivation
for this thread is, first, to be sure I
summary: Programmatically copying NetCDF mostly works: thanks for your
assistance! However, 4 followup questions/responses (and motivation
provided) below regarding problems encountered.
details:
Tom Roche Thu, 05 Jan 2012 18:29:35 -0500
I need to do surgery on a large netCDF file (technically
How to programmatically (i.e., without no or minimal handcoding) copy
a netCDF file? (Without calling
system(cp whatever wherever)
:-) Why I ask:
I need to do surgery on a large netCDF file (technically an I/O API
file which uses netCDF). My group believes a data-assimilation error
caused a
On Thu, Jan 5, 2012 at 3:29 PM, Tom Roche tom_ro...@pobox.com wrote:
How to programmatically (i.e., without no or minimal handcoding) copy
a netCDF file? (Without calling
system(cp whatever wherever)
[...]
So I'm wondering, can anyone point me to, or provide, code that copies
a
2011/9/24 Muhammad Rahiz muhammad.ra...@ouce.ox.ac.uk:
Dear all,
I'm having issues with the installation of the ncdf package. It returns a
non-zero exit status. Can anyone suggest what I should do next? FYI, I do
not have problems installing other packages.
[...]
/usr/bin/ld:
Dear all,
I'm having issues with the installation of the ncdf package. It returns a
non-zero exit status. Can anyone suggest what I should do next? FYI, I do
not have problems installing other packages.
Thanks.
Muhammad
* installing *source* package ‘ncdf’ ...
checking for nc-config...
Perhaps start by reading the posting guidelines.
---
Jeff Newmiller The . . Go Live...
DCN:jdnew...@dcn.davis.ca.us Basics: ##.#. ##.#. Live Go...
Live: OO#.. Dead: OO#.. Playing
Research Engineer (Solar/Batteries
Sashi Challa wrote:
I am trying to install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
Hi Sashi,
Just had a similar issue today. I would suggest the --disable-netcdf4 hasn't
Sashi Challa wrote:
I am trying to install ncdf package on a Linux 64-bit machine.
[...]
Hi Sashi,
Just had a similar issue today. I would suggest the --disable-netcdf4
hasn't
been picked up.
Try installing an earlier version and using that path instead.
See:
Hi All,
I am trying to install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
I then tried to install ncdf package in R
R CMD INSTALL
To include code in a shared object on x86_64 Linux it must be compiled
with -fPIC (or -fpic), as the error message said quite explicitly.
You seem only to have static netlib libraries: you need dynamic ones
if you installed these from a binary package. However,
'/apps/netcdf/4.0.1/gcc/lib'
Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args=-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to
Dear all,
working with R under Linux, I am not able to install the ncdf-package.
The following appears:
install.packages(ncdf)
Warnung in install.packages(ncdf) :
argument 'lib' is missing: using
'/user/silke/R/x86_64-unknown-linux-gnu-library/2.6'
--- Please select a CRAN mirror for use in
On Thu, 13 Aug 2009 11:29:40 +0200 Silke Troemel
silke.troe...@uni-bonn.de wrote:
ST
/usr/lib64/gcc/x86_64-suse-linux/4.0.2/../../../../x86_64-suse-linux/bin/ld:
ST /usr/local/lib64/libnetcdf.a(attr.o): relocation R_X86_64_32S
ST against `a local symbol' can not be used when making a shared
ST
Dear all,
I am attempting to convert 10 NetCDF files into a single NetCDF file, due to
the data input requirements of a model I hope to use. I am using the ncdf
package, version 1.6. The data are global-scale water values, on a monthly
basis for 10 years (ie. 120 months of data in total; at
Friends,
Someone please share your experience in installing ncdf and RNetCDF in
fedora10. I am not able make it work as it throws me the following error. My
R version is 2.8.0.
library(ncdf)
unable to load shared library '/usr/lib/R/library/ncdf/libs/ncdf.so':
Hi,
just quick googling gave me the hint that it can be ralated to SE
Linux restrictions of Fedora linux. Just try to disable SE Linux
feature.
http://www.appistry.com/community/forums/content/cannot-restore-segment-prot-after-reloc-permission-denied
Best regards,
--
Andris
subramanian
Hi Andris,
THANK YOU SO MUCH. THIS WAS THE PROBLEM INDEED. When disable SE Linux, it
worked fine.
Thank you once again,
Bala
On Tue, Apr 21, 2009 at 4:01 PM, Andris Jankevics an...@osi.lv wrote:
Hi,
just quick googling gave me the hint that it can be ralated to SE
Linux restrictions of
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