Re: [R] Installing bioconduction packages in connection with loading an R package

This sounds like your package belongs in the bioconductor repository rather than in CRAN. Referencing bioc packages only in Suggests might make it appropriate for CRAN. On October 11, 2020 11:51:29 AM PDT, "Søren Højsgaard" wrote: >Dear all, > >My gRbase package imports functionality from the

[R] Installing bioconduction packages in connection with loading an R package

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use

Re: [R] package plotrix: how to account for two two z categories

Hmmm, maybe without the caps... Jim On Sat, Sep 26, 2020 at 8:20 AM Jim Lemon wrote: > > Hi Luigi, > Good illustration. Maybe if I can integrate vertical lines to show the > nesting instead of bars it would work better. While it makes the > nesting much clearer, some people may still accuse you

Re: [R] package plotrix: how to account for two two z categories

Hi Luigi, Good illustration. Maybe if I can integrate vertical lines to show the nesting instead of bars it would work better. While it makes the nesting much clearer, some people may still accuse you of using a bar plot. # new functions with the modifications source("barNest.R")

Re: [R] package plotrix: how to account for two two z categories

Thanks! looks nicer already. I am attaching the figure I temporarily made with normal brkdn.plot but yours has more information. Best regards Luigi On Fri, Sep 25, 2020 at 1:43 PM Jim Lemon wrote: > > Hi Luigi, > Here is a quick example of how points would look in the same > configuration.

Re: [R] package plotrix: how to account for two two z categories

Hi Luigi, Here is a quick example of how points would look in the same configuration. Perhaps with end caps to show the nesting it may be more like what you want. Jim On Thu, Sep 24, 2020 at 6:34 PM Jim Lemon wrote: > > Oh, sorry, forgot about the colors. A list beginning with the color > for

Re: [R] package plotrix: how to account for two two z categories

Oh, sorry, forgot about the colors. A list beginning with the color for the overall summary, then colors for the first factor and so on. See the help page for examples. Jim On Thu, Sep 24, 2020 at 6:32 PM Jim Lemon wrote: > > Hi Luigi, > I thought a lot about that when I was writing the

Re: [R] package plotrix: how to account for two two z categories

Hi Luigi, I thought a lot about that when I was writing the function. The only way I could think of to show the nesting was dots with horizontal lines and it looked messy and was quite hard to visualize the nesting. If you do have any great ideas I always welcome contributions to plotrix. Jim On

Re: [R] package plotrix: how to account for two two z categories

Hi Luigi, To display a nested breakdown like this I would suggest barNest. This is one way to display the nesting. Note that if you change the order of the factors in the formula you will get a different plot, so think about how you want the summaries nested. Error bars can only be displayed on

[R] package plotrix: how to account for two two z categories

Hello, I have an experiment measuring optical density (OD) when comparing three parameters: a) concentration of the target b) concentration of the probe c) concentration of the reporter antibody. Using plotrix I can nicely draw the first two into clusters, but I can't get separation for the third

[R] [R-pkgs] 'analyzer' - R package to automatic data analysis

Hi all, I would like to introduce a recently published R package 'analyzer' which can be used for automated data analysis. With one command a detailed R markdown notebook can be generated with pre-written codes for data analysis using 15+ statistical tests, model, variable selection, and plots

Re: [R] Package installation problem

Hi John, This is a bit off-topic for this mailing list as your issue is a linux, specifically Fedora, issue, and not R. I don't use Fedora but I did a quick Google search on fedora missing package .pc file and that came back with a lot of hits. This one in particular should be a good place to

Re: [R] Package installation problem

On Fri, 29 May 2020 08:47:35 +0300 Eric Berger wrote: > Hi John, > This is a bit off-topic for this mailing list as your issue is a > linux, specifically Fedora, issue, and not R. > I don't use Fedora but I did a quick Google search on > > fedora missing package .pc file > > and that came

Re: [R] Package installation problem

On Fri, 29 May 2020 18:36:39 +0200 Martin Møller Skarbiniks Pedersen wrote: > sudo dnf install libcurl-devel Martin, I was going to say I had already done that more than once, using both the command line and the new "dnfdragora" package manager, but then decided, "what the heck. I'll try

Re: [R] Package installation problem

On Fri, 29 May 2020 at 07:03, John via R-help wrote: > I'm not certain just what this problem is. Trying to install the > "curl" package, which "tseries" wants results in the following error: > > > Package libcurl was not found in the pkg-config search path. > Perhaps you should add the

Re: [R] Package installation problem

The library alone is not enough... you have to have the development headers for compiling code against the library. On May 28, 2020 10:03:18 PM PDT, John via R-help wrote: >I'm not certain just what this problem is. Trying to install the >"curl" package, which "tseries" wants results in the

[R] Package installation problem

I'm not certain just what this problem is. Trying to install the "curl" package, which "tseries" wants results in the following error: Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment

Re: [R] R package for discrete-time competing-risk anlayses..

eathed in his "Bloom County" comic strip ) On Mon, May 11, 2020 at 12:50 PM Sorkin, John wrote: > > Can someone direct me to an R package that can run discrete-time competing > risk analyses? > > Thank you, > > John > > > > John David Sorkin M.D., Ph.D.

[R] R package for discrete-time competing-risk anlayses..

Can someone direct me to an R package that can run discrete-time competing risk analyses? Thank you, John John David Sorkin M.D., Ph.D. Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine Division of Gerontology and Geriatric Medicine

Re: [R] Package 'coin' - How to extract rho

m Lemon Gesendet: Mittwoch, 29. April 2020 05:53 An: Blume Christine Cc: r-help@r-project.org Betreff: Re: [R] Package 'coin' - How to extract rho Hi Christine, I noticed that your question did not receive a reply. As I don't know exactly what you have tried, it is a bit difficult to suggest

Re: [R] Package 'coin' - How to extract rho

orrelation coefficients. Does someone have an opinion on this? Best, Christine -Ursprüngliche Nachricht- Von: Achim Zeileis Gesendet: Mittwoch, 29. April 2020 13:56 An: Blume Christine Cc: Jim Lemon ; torsten.hoth...@uzh.ch; r-help@r-project.org Betreff: Re: [R] Package 'coin' - How to e

Re: [R] Package 'coin' - How to extract rho

Happiness, Citysize) # Bootstrapped correlation r <- spearman_test(Happiness ~ Citysize, data = datastat, distribution = "approximate", alternative = c("two.sided")) r pvalue(r) statistic(r) -Ursprüngliche Nachricht- Von: Jim Lemon Gesendet: Mittwoch, 29. April 2

Re: [R] Package 'coin' - How to extract rho

s ~ Citysize, data = datastat, distribution = "approximate", alternative = c("two.sided")) r pvalue(r) statistic(r) -Ursprüngliche Nachricht- Von: Jim Lemon Gesendet: Mittwoch, 29. April 2020 05:53 An: Blume Christine Cc: r-help@r-project.org Betreff: Re: [R]

Re: [R] Package 'coin' - How to extract rho

Hi Christine, I noticed that your question did not receive a reply. As I don't know exactly what you have tried, it is a bit difficult to suggest a solution. If you are still unable to get this to work, could you provide an example of your present code and data if necessary? Jim On Mon, Apr 27,

[R] Package 'coin' - How to extract rho

I am using the 'coin' package to compute bootstrapped correlations. I am able to extract the p-value with confidence intervals as well as the test statistic Z. However, I am unable to find rho, i.e. the correlation coefficient. Can someone help? Kind regards, Christine [[alternative

Re: [R] Package renv and Rscript

Hi, Ah, of course - the wrapper would be a shell wrapper not an R wrapper ... ### #!/bin/sh cd /path/to/project Rscript /path/to/script.R /path/to/config_file ### Thanks so much! Ben On Tue, Apr 14, 2020 at 2:13 PM Thierry Onkelinx wrote: > Dear Ben, > > I think that you first need to go to

Re: [R] Package renv and Rscript

Dear Ben, I think that you first need to go to your project and then start Rscript from that location. renv() needs to pick up the .Renviron file located at the root of your project. Best regards, ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of Flanders

Re: [R] Package renv and Rscript

Whoops! The silly "send" button jumped out and grabbed my cursor before I was ready for it. Second try... I am using renv (https://rstudio.github.io/renv/) to maintain a project environment in a directory (ala '/path/to/project'). Within the project I have a number of scripts that I call with

[R] Package renv and Rscript

Hi, I am using renv (https://rstudio.github.io/renv/) to maintain a project environment in a directory (ala /path/to/project) Within the project I have a number of scripts that I call using... $ Rscript /path/to/script.R /path/to/config_file I can kick this off successfully with the renv

[R] About package the GNU C++ library into R package

Dear all Does anyone knwon how to package a GNU C++ library into R package ? Thanks ! WL [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch

Re: [R] Package httr::GET() question

Thanks. Yes that is what I found out. We are switching our web service to require strict encoding (a lot of services got caught when Apache Tomcat made a similar switch) and are trying to see if it that will break any of our R packages before we make the switch, As always, appreciate all

Re: [R] Package httr::GET() question

curl::curl_escape() — https://github.com/jeroen/curl/search?q=curl_escape_q=curl_escape — uses the underlying libcurl curl_easy_escape() which does proper escaping b/c it's, well, curl. {httr} uses curl::curl_escape() — https://github.com/r-lib/httr/search?q=curl_escape_q=curl_escape The use

Re: [R] Package httr::GET() question

Thanks. Yes. I did that, it also has a verbose mode so that I could see what it was doing. What I needed was not just escaping but strict escaping. My memory forma number of years back was that I had issues with urlencode from base not being strict. And of course you don't what to encode

Re: [R] Package httr::GET() question

Hi, Perhaps you could test it out by using httr::GET() with and without escaping using xml2::url_escape()? https://www.rdocumentation.org/packages/xml2/versions/1.2.2/topics/url_escape Cheers, Ben On Tue, Feb 18, 2020 at 1:29 PM Roy Mendelssohn - NOAA Federal via R-help wrote: > > Hi All: > >

[R] Package httr::GET() question

Hi All: I hav been trying to go through the code for httr::GET() but it is somewhat beyond what I know. What I am trying to find out is if all urls are automatically percent encoded, or whether the user needs to do that. Thanks, -Roy ** "The contents of this message do

Re: [R] How my r package convert into higher r version

22, 2020 at 12:56 AM Ulavappa Angadi wrote: > > Dear all > please help me to how my r package (version 3.0.) convert into higher r > version (3.6) > > while installing in higher version R it showing > package mbFerns_1.0.1.zip is not available (for R version 3.6.0) > > Wit

Re: [R] How my r package convert into higher r version

on because the recipients will only see some mangled version of what you sent. Review your email client settings. [1] https://stat.ethz.ch/mailman/listinfo/r-package-devel [2] https://cran.r-project.org/web/packages/submission_checklist.html On January 21, 2020 3:44:51 AM PST, Ulavappa Angadi wrote

[R] How my r package convert into higher r version

Dear all please help me to how my r package (version 3.0.) convert into higher r version (3.6) while installing in higher version R it showing package mbFerns_1.0.1.zip is not available (for R version 3.6.0) With regards Angadi U B Principal. Scientist CABin, IASRI, Pusa, New Delhi

Re: [R] R package for meta-analysis from z scores

Dear James Your question really boil down to whether you can estimate tau^2, the between study variance of the effect sizes, if you only have p-values. As far as I can see the answer has to be no. Michael On 16/01/2020 13:10, james poweraid wrote: Hello, I have a set of Z scores from an

[R] R package for meta-analysis from z scores

Hello, I have a set of Z scores from an N=2 studies and I need to run a meta-analysis across the two Z scores for many N variables. I do not have effect sizes and SEs. I realize there are many different meta analysis packages in R, but I only have Z scores and it seems to me this is limiting. I

Re: [R] R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data

You may get a useful answer here, but you are much more likely to at the Bioconductor website that specializes in this sort of thing. https://bioconductor.org/help/ Cheers, Bert On Thu, Jan 2, 2020 at 12:16 PM Yuan Chun Ding wrote: > Hi R users, > Does any one know a R package for g

[R] R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data

Hi R users, Does any one know a R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data? For example, performing Hardy Weinberg equilibrium test, calculating heterozygosity and polymorphism information content etc. I am sorry if this question is not relevant

Re: [R] Errors in R package installation

On Fri, 13 Dec 2019 14:21:06 + David Stevens wrote: > ** byte-compile and prepare package for lazy loading > Fatal error: cannot open file 'C:\Users\David': No such file or > directory > > ERROR: lazy loading failed for package 'rmarkdown' Oh. Sorry, that seems to be yet another place

Re: [R] Errors in R package installation

I started a new session and entered > rm(list=ls()) > install.packages( + c('lmerTest', 'quantreg', 'rmarkdown', 'SparseM'), + lib = .libPaths()[1L], + destdir = 'c:/myRLib' + ) And this is the result: There are binary versions available but the source versions are later:

Re: [R] Errors in R package installation

On Fri, 13 Dec 2019 13:19:54 + David Stevens wrote: > There are binary versions available but the source versions are > later: Okay, that would be the reason why would R on Windows try to install a source package instead of a binary package. One can also see that callr has just been

Re: [R] Errors in R package installation

Ivan Here's a longer list. RStudio checked for what needs updating, I select all of them, and enter. The following is the console output (FYI - I tried this in plain Rgui.exe and got the same result - I don't think it's an RStudio issue). The failed installs are toward the bottom. Best David

Re: [R] Errors in R package installation

Ivan - thanks for looking into this. My answers to your comments are below. Cheers David On 12/13/2019 1:46 AM, Ivan Krylov wrote: On Thu, 12 Dec 2019 15:48:13 + David Stevens wrote: Certain R packages will not install properly on my Windows 10 computer.

Re: [R] Errors in R package installation

On Thu, 12 Dec 2019 15:48:13 + David Stevens wrote: > Certain R packages will not install properly on my Windows 10 > computer. Certain, but not all? Which packages are you able to install on that computer? > Warning: invalid package 'C:\Users\David' > Warning: invalid package >

Re: [R] Errors in R package installation

And a low-tech approach: how about renaming "C:\Users\David Stevens" to "C:\Users\DavidStevens" (i.e. remove the blank in the name). A few years ago I did the equivalent "C:\Program Files" --> "C:\ProgramFiles" to avoid similar installation problems. On Thu, Dec 12, 2019 at 9:06 PM Richard M.

Re: [R] Errors in R package installation

Directory and file names with embedded blanks frequently don't work on WIndows. Use the 8.3 version of the name. Since you were able to get the package onto your machine, you can install it from there. The downloaded source packages are in ‘C:\Users\David

Re: [R] Errors in R package installation

Thanks Eric - I'll follow up with this link. I'd tried some of these things before but I'll keep after it. Best David On 12/12/2019 9:52 AM, Eric Berger wrote: > Actually there was progress as after it failed it removed the folder > c:/myRlib/callr, which means it had used it. Seems good. > I

Re: [R] Errors in R package installation

Actually there was progress as after it failed it removed the folder c:/myRlib/callr, which means it had used it. Seems good. I think you might find the discussion here to be relevant https://community.rstudio.com/t/cant-install-package-remotes-when-trying-to-install-devtools/34121 Good luck,

Re: [R] Errors in R package installation

Thanks Eric - I had tried this and failed with install.packages('callr',destdir='c:/myRLib') Installing package into ‘C:/myRLib’ (as ‘lib’ is unspecified) There is a binary version available but the source version is later: binary source needs_compilation callr 3.3.2 3.4.0

Re: [R] Errors in R package installation

Apparently it does not like that the fact that your user 'David Stevens' has a blank. Looking at the documentation ?install.packages it seems that if you modify your call to something like install.packages('callr',destdir='C:\tmp') you might be ok. (caveat: I did not try this) You should make

[R] Errors in R package installation

Certain R packages will not install properly on my Windows 10 computer. For example, if I install.packages('callr') The result is trying URL 'https://cloud.r-project.org/src/contrib/callr_3.4.0.tar.gz' Content type 'application/x-gzip' length 100129 bytes (97 KB) downloaded 97 KB Warning:

Re: [R] package MCMCpack

That was it!!  Thank you very much. Bill P. -Original Message- From: William Michels Sent: Wednesday, December 4, 2019 4:15 PM To: Prophet, William Cc: Duncan Murdoch ; r-help@r-project.org Subject: Re: [R] package MCMCpack Sent by an external sender

Re: [R] package MCMCpack

: > installation of package > 'C:/Users/prophetw/AppData/Local/Temp/RtmpykZoRh/downloaded_packages/MCMCpack_1.4-3.tar.gz' > had non-zero exit status > > > > > > -Original Message- > From: William Michels > Sent: Wednesday, December 4, 2019 3:45 PM > To: Prop

Re: [R] package MCMCpack

.tar.gz' had non-zero exit status -Original Message- From: William Michels Sent: Wednesday, December 4, 2019 3:45 PM To: Prophet, William Cc: Duncan Murdoch ; r-help@r-project.org Subject: Re: [R] package MCMCpack

Re: [R] package MCMCpack

ill > got an error. > > > -Original Message- > From: Duncan Murdoch > Sent: Wednesday, December 4, 2019 8:32 AM > To: Prophet, William ; r-help@r-project.org > Subject: Re: [R] package MCMCpack > > Sent by an external sender > >

Re: [R] package MCMCpack

Yes, I should have mentioned that I tried this same line of code and I still got an error. -Original Message- From: Duncan Murdoch Sent: Wednesday, December 4, 2019 8:32 AM To: Prophet, William ; r-help@r-project.org Subject: Re: [R] package MCMCpack Sent by an external sender

Re: [R] package MCMCpack

On 04/12/2019 8:47 a.m., Prophet, William wrote: I am running R on my work computer with the following parameters: sessionInfo() R version 3.5.3 (2019-03-11) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) I am trying to install the "MCMCpack" library.

[R] package MCMCpack

I am running R on my work computer with the following parameters: > sessionInfo() R version 3.5.3 (2019-03-11) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) I am trying to install the "MCMCpack" library. In the process however, I receive the message: >

[R] Problems with external library conflict in R package

ndependent software project I installed boost 1.71 from source in /usr/local. Since then, the R package does not install anymore; I get: Error: package or namespace load failed (...) dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object (...) XXX.so undefi

Re: [R] Package manual built by CRAN

Probably better posted on the r-package-devel mailing list, which is specifically devoted to such issues. Cheers, Bert On Thu, Jul 25, 2019 at 8:12 AM Helmut Schütz wrote: > Deer all, > > recently I noticed an unexpected effect. The PDF-manual built from the > package’s .Rd-

[R] Package manual built by CRAN

Deer all, recently I noticed an unexpected effect. The PDF-manual built from the package’s .Rd-files looked different to what I was used to before and to the one rendered locally. Specifically: If the reference-section looks like this \references{   foo \href{bar}{baz}   ... } previously

[R] [R-pkgs] Update for R package KScorrect for K-S goodness-of-fit tests

Greetings, We wanted to announce v. 1.4.0 of the R package 'KScorrect', which carries out the Lilliefors correction to the Kolmogorov-Smirnoff (K-S) test for use in (one-sample) goodness-of-fit tests. Aside from several minor changes, the biggest change is that the Monte Carlo algorithm now

Re: [R] Package sf, unit for dist in st_buffer

Don't know, but ask on r-sig-geo if you don't get a satisfactory reply here. Bert On Thu, Jul 4, 2019, 4:04 AM Ashim Kapoor wrote: > Dear All, > > map3 <- st_read("My Shapefile") %>% st_as_sf %>% st_transform(crs = 7755) > # Please see any shapefile here : >

[R] Package sf, unit for dist in st_buffer

Dear All, map3 <- st_read("My Shapefile") %>% st_as_sf %>% st_transform(crs = 7755) # Please see any shapefile here : https://github.com/datameet/maps/tree/master/Districts map_buffer <- st_buffer(mapHR, dist = -1000) # CRS 7755 is for India, please see here, https://epsg.io/7755 My query is :

Re: [R] Looking for R package to extract Concept from text files

Thank you so much! Have a nice day! With best regards, On Mon, Jul 1, 2019 at 11:16 AM Jeff Newmiller wrote: > Or https://cran.r-project.org/web/views/NaturalLanguageProcessing.html > > On June 30, 2019 11:13:10 PM PDT, Richard O'Keefe > wrote: > >Are you aware of

Re: [R] Looking for R package to extract Concept from text files

Thank you so much! Have a nice day! With best regards, On Mon, Jul 1, 2019 at 10:43 AM Richard O'Keefe wrote: > Are you aware of https://www.tidytextmining.com/ > > On Mon, 1 Jul 2019 at 16:57, Mehdi Dadkhah > wrote: > >> Thank you!! >> Have a nice day! >> With best regards, >> >> On Mon, Jul

Re: [R] Looking for R package to extract Concept from text files

Or https://cran.r-project.org/web/views/NaturalLanguageProcessing.html On June 30, 2019 11:13:10 PM PDT, Richard O'Keefe wrote: >Are you aware of https://www.tidytextmining.com/ > >On Mon, 1 Jul 2019 at 16:57, Mehdi Dadkhah >wrote: > >> Thank you!! >> Have a nice day! >> With best regards, >>

Re: [R] Looking for R package to extract Concept from text files

Are you aware of https://www.tidytextmining.com/ On Mon, 1 Jul 2019 at 16:57, Mehdi Dadkhah wrote: > Thank you!! > Have a nice day! > With best regards, > > On Mon, Jul 1, 2019 at 6:57 AM Abby Spurdle wrote: > > > > > > In parts of these reports, people may state their > > > reasons for do not

Re: [R] Looking for R package to extract Concept from text files

Thank you!! Have a nice day! With best regards, On Mon, Jul 1, 2019 at 6:57 AM Abby Spurdle wrote: > > > In parts of these reports, people may state their > > reasons for do not using such system. Is it possible to use R to only > > extract such reasons from all reports? > > Are the reports in

Re: [R] Looking for R package to extract Concept from text files

> In parts of these reports, people may state their > reasons for do not using such system. Is it possible to use R to only > extract such reasons from all reports? Are the reports in plain text format? Are there specific key words to search for? Are the reports in a certain order? If so, this

[R] Looking for R package to extract Concept from text files

Hi, I hope you are doing well! I have a question about R, could you please answer it? Please consider that we have some reports (for example 100 reports) which people presented their experience about use of a particular system. These reports are unstructured. In parts of these reports, people may

Re: [R] R package that translates zip codes into longitude and longitude

> There seems to be a big database of this here: > > > > http://download.geonames.org/export/dump/ > > > > Jim > > > > On Mon, May 6, 2019 at 2:47 PM Nicola Ruggiero > > wrote: > > > > > > Hi there, > > > > > > I'm look

Re: [R] R package that translates zip codes into longitude and longitude

this here: > > http://download.geonames.org/export/dump/ > > Jim > > On Mon, May 6, 2019 at 2:47 PM Nicola Ruggiero > wrote: > > > > Hi there, > > > > I'm looking for a R package that would enable me to add a column to a > > data.frame that is itself

Re: [R] R package that translates zip codes into longitude and longitude

Hi Nicola, There seems to be a big database of this here: http://download.geonames.org/export/dump/ Jim On Mon, May 6, 2019 at 2:47 PM Nicola Ruggiero wrote: > > Hi there, > > I'm looking for a R package that would enable me to add a column to a > data.frame that is itself a tra

[R] R package that translates zip codes into longitude and longitude

Hi there, I'm looking for a R package that would enable me to add a column to a data.frame that is itself a translation of zip codes into longitude and latitude. The column in the data.frame looks like this [begin quote]: waltham, Massachusetts 02451 Columbia, SC 29209 Wheat Ridge , Colorado

Re: [R] Package for penalized multivariate Regression

t;> for >> penalized regression. >> >> When I searched for penalized regression, I found a lot of packages but >> all >> of them have predefined penalties like lasso, ridge or second differences. >> >> I used the gam() package in mgcv when I had an univar

Re: [R] Package for penalized multivariate Regression

enalized regression. > > When I searched for penalized regression, I found a lot of packages but all > of them have predefined penalties like lasso, ridge or second differences. > > I used the gam() package in mgcv when I had an univariate response: > > gam(Y~x_1, paraPen = penaltyma

[R] Package for penalized multivariate Regression

altymatrix) but this package do not support multivariate regression. Is there any R package where I can use an individual penalty matrix to my coefficients? Or can you give me any advice how I solve the problem I have? Kind regards, Dominik [[alternative HTML versi

Re: [R] Problems install R package "Caret" in Rstudio version 3.3.3

Hi Chaoyang, R 3.3.3 is rather old. If possible you should upgrade to 3.5.3. I believe 'caret' will install properly under R 3.5.3 On Mon, 1 Apr 2019 at 02:49, Chaoyang Li wrote: > > Hi, everyone, > I was trying to use the ‘caret’ for splitting dataset and cross > validation function,

[R] Problems install R package "Caret" in Rstudio version 3.3.3

Hi, everyone, I was trying to use the ‘caret’ for splitting dataset and cross validation function, but I couldn’t install this package and it always gives me following warning: Warning in install.packages : package ‘caretEnsembles’ is not available (for R version 3.3.3).

Re: [ESS] turning off ess-r-package-mode

I've had quite some troubles with this too... I found that renaming the DESCRIPTION file will do the trick. I choose to rename it to "locked_DESCRIPTION" and then I can just go and rename it back whenever I want the features of package mode. Thought it might help someone else in the future.

Re: [R] Package updates fail: how to fix the causes [FIXED]

On Fri, 15 Feb 2019, Ista Zahn wrote: Install udunits. Ista, Yep. Installing that package allowed the chain to build. Much appreciated. Best regards, Rich __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see

Re: [R] Package updates fail: how to fix the causes

On Fri, 15 Feb 2019, Ista Zahn wrote: Install udunits. If you don't know how to do that in slackware go ask on a slackware forum. Ista, Interesting. This must be a new dependency because prior versions of units didn't require it. However, SlackBuilds.org has that package so I'll install it

Re: [R] Package updates fail: how to fix the causes

On Fri, 15 Feb 2019, Bert Gunter wrote: You *might* do better posting this on r-sig-debian and/or r-sig-fedora, especially as this is not a question about R programming per se, which makes it off topic for this list, but more on topic for those lists. Bert, Since I run only Slackware I'm

Re: [R] Package updates fail: how to fix the causes

Hi Rich, Install udunits. If you don't know how to do that in slackware go ask on a slackware forum. Best, Ista On Fri, Feb 15, 2019 at 10:58 AM Rich Shepard wrote: > > Running R-3.5.2 on Slackware-14.2, using my script that updates installed > packages found four that failed. My web searches

Re: [R] Package updates fail: how to fix the causes

You *might* do better posting this on r-sig-debian and/or r-sig-fedora, especially as this is not a question about R programming per se, which makes it off topic for this list, but more on topic for those lists. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep

[R] Package updates fail: how to fix the causes

Running R-3.5.2 on Slackware-14.2, using my script that updates installed packages found four that failed. My web searches did not find relevant hits, and only the last build failure is explained by the build failure of a specific dependency. The results displayed are: ERROR: dependency ‘sf’ is

[R] R package installation error

Hi there, I'm running R version 3.5.2 on Linux Mint. I try install.packages("hierfstat") and get this: ** byte-compile and prepare package for lazy loading Error in rbind(info, getNamespaceInfo(env, "S3methods")) : number of columns of matrices must match (see arg 2) ERROR: lazy loading

Re: [R] Package updates for new versions

On Fri, 12 Oct 2018, Micha Silver wrote: Just to clarify, I believe that rpy2 is a *python* package. Micha, So I learned yesterday. Thanks very much, Rich __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see

Re: [R] Package updates for new versions

bug.report(package="thePackage") will look through the DESCRIPTION file to figure out a good way to report concerns about a package. Bill Dunlap TIBCO Software wdunlap tibco.com On Thu, Oct 11, 2018 at 10:41 AM, Jeff Newmiller wrote: > I recommend reading the DESCRIPTION file or the CRAN web

Re: [R] Package updates for new versions

I recommend reading the DESCRIPTION file or the CRAN web page for the package if it is on n CRAN, e.g. [1]. While every package on CRAN is supposed to have an email for contact, many developers do prefer alternate communication approaches. Github is NOT used universally though. [1]

Re: [R] Package updates for new versions

On Thu, 11 Oct 2018, Bert Gunter wrote: ?maintainer Bert, I found maintainer names from the package entry in the local CRAN repo. I suspect that the above does not work well with non-installed packages. Am I wrong? Regards, Rich __

Re: [R] Package updates for new versions

On Thu, 11 Oct 2018, Amit Mittal wrote: You can contact them as Marc suggested by opening an account at bit (bitbucket/Atlassian) or git (github) Most prefer strongly to have a primary at git before going to Atlassian other code checkers so you can discover the package team there esp if any

Re: [R] Package updates for new versions

Most developers like to be unavailable on email without genuine queries, one or the other we tell you to come thru git On Thu 11 Oct, 2018, 22:26 Bert Gunter, wrote: > ?maintainer > > in R accesses the package description file to provide maintainer info. No > need to fool around with git or

Re: [R] Package updates for new versions

?maintainer in R accesses the package description file to provide maintainer info. No need to fool around with git or other software development repositories. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley

Re: [R] Package updates for new versions

You can contact them as Marc suggested by opening an account at bit (bitbucket/Atlassian) or git (github) Most prefer strongly to have a primary at git before going to Atlassian other code checkers so you can discover the package team there esp if any future development is in the pipes. Don't

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