Re: [R] Package updates for new versions

On Thu, 11 Oct 2018, Marc Schwartz wrote: Your best bet is to directly contact the package maintainers, as they would be the definitive source for timeline information on package updates. Marc, Thank you, I will contact them. Being unfamiliar with standard practice I asked first. Best

Re: [R] Package updates for new versions

> On Oct 11, 2018, at 11:40 AM, Rich Shepard wrote: > > This is a question to better my understanding of the relationship between > core R versions and packages that work with them. It's not a complaint or > criticism. > > Installed here is R-3.5.1. There are two packages that allow

[R] Package updates for new versions

This is a question to better my understanding of the relationship between core R versions and packages that work with them. It's not a complaint or criticism. Installed here is R-3.5.1. There are two packages that allow integration of R and GRASS that are not yet available for 3.5.1: rpy2

Re: [R] [FORGED] Re: Change the position of label when using R package eulerr

Yes, it does. Thank you. Aimin On Sun, Sep 16, 2018 at 11:00 PM Paul Murrell wrote: > Hi > > The 'x' component of the 't' grob that you get back from grid.get() is a > unit object, which you can subset and assign to a subset, for example > this code nudges the fourth label up and to the right

Re: [R] [FORGED] Re: Change the position of label when using R package eulerr

Hi The 'x' component of the 't' grob that you get back from grid.get() is a unit object, which you can subset and assign to a subset, for example this code nudges the fourth label up and to the right 1mm in each direction ... x <- t$x y <- t$y x[4] <- t$x[4] + unit(1, "mm") y[4] <- t$y[4]

Re: [R] Change the position of label when using R package eulerr

> On Sep 15, 2018, at 1:27 PM, Aimin Yan wrote: > > Thank you, I tried your code, but I still got error: > > fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, > "ciLAD" = 3, "ciLAD_MEF" = 101, "LAD_MEF" > = 541, > "ciLAD_MEF" = 2),shape

Re: [R] Change the position of label when using R package eulerr

Thank you, I tried your code, but I still got error: fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, "ciLAD" = 3, "ciLAD_MEF" = 101, "LAD_MEF" = 541, "ciLAD_MEF" = 2),shape = "ellipse") fit1.plot <- plot(fit1,quantities = TRUE,fill =

Re: [R] Change the position of label when using R package eulerr

> On Sep 14, 2018, at 2:03 PM, Aimin Yan wrote: > > Thank you, > > I figure out a way like this: > > fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, > "ciLAD" = 3, "ciLAD_MEF" = 101, "LAD_MEF" > = 541, > "ciLAD_MEF" = 2),shape =

Re: [R] Change the position of label when using R package eulerr

Thank you, I figure out a way like this: fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, "ciLAD" = 3, "ciLAD_MEF" = 101, "LAD_MEF" = 541, "ciLAD_MEF" = 2),shape = "ellipse") plot(fit1,quantities = TRUE,fill = rainbow(7),lty = 1:2,labels =

[R] Change the position of label when using R package eulerr

I am using eulerr to get venn. My code is like: fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, "ciLAD" = 3, "ciLAD_MEF" = 101, "LAD_MEF" = 541, "ciLAD_MEF" = 2),shape = "ellipse") plot(fit1,quantities = TRUE,fill = rainbow(7),lty =

Re: [R] Change the position of label when using R package eulerr

> On Sep 13, 2018, at 2:31 PM, Aimin Yan wrote: > > I am using eulerr to get venn. > My code is like: > > fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, >"ciLAD" = 3, "ciLAD_MEF" = 101, > "LAD_MEF" = 541, >"ciLAD_MEF" = 2),shape =

[R] Change the position of label when using R package eulerr

I am using eulerr to get venn. My code is like: fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167, "ciLAD" = 3, "ciLAD_MEF" = 101, "LAD_MEF" = 541, "ciLAD_MEF" = 2),shape = "ellipse") plot(fit1,quantities = TRUE,fill = rainbow(7),lty =

Re: [R] R package downloading

The Bioconductor project does things their own way. Please use their support channels for help with their packages. https://www.bioconductor.org/help/ On August 22, 2018 2:27:47 PM PDT, Spencer Brackett wrote: >Hello all, > >Once the R package TCGAbiolinks or biocLite(“TCG

[R] R package downloading

Hello all, Once the R package TCGAbiolinks or biocLite(“TCGAbiolinks”) is done unpacking, how do I go about apply any particular analysis with it? Currently, I am unable to access the consule and edit any further. Would I therefore have to open up a new script? Spencer Brackett

Re: [R] Submit your own R package - @examples

This should be posted on the r-package-devel list rather than here: https://stat.ethz.ch/mailman/listinfo/r-package-devel Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in

Re: [R] Submit your own R package - @examples

maybe try the R-package-devel or R-devel lists? Steve Ellison *** This email and any attachments are confidential. Any use...{{dropped:8}} __ R-help@r-project.org mailing list -- To UN

[R] Submit your own R package - @examples

Dear community, I am trying to submit my first R package to CRAN and stumbled upon the following problem: Most of my methods, are not exported to the namespace using the @examples options. Will I have to provide @examples for these methods in the documentation? If yes, I have the problem

Re: [R] Package installation

On 09/07/2018 6:18 AM, Steven Yen wrote: I have had trouble installing packages (e.g., car, aod) in some computers (such as computers in the student lab) but no problem in my own laptop. Installation typically goes through, but after I got out and back in R (and RStudios), the error message says

[R] Package installation

I have had trouble installing packages (e.g., car, aod) in some computers (such as computers in the student lab) but no problem in my own laptop. Installation typically goes through, but after I got out and back in R (and RStudios), the error message says "packages xxx not available". That is,

Re: [R] package colorspace and .WhitePoint question

As a follow-up to this issue: A revised version of the "colorspace" package is now available on R-Forge at https://R-Forge.R-project.org/R/?group_id=20 This provides a function whitepoint() that can query and/or modify the whitepoint used in all color conversions within the package. To try

Re: [R] Calculate focal values for neighboring cells that are located at the raster edge from the function "focal" in the R package "raster"

Hello, >> I am using the function "focal" in the R package "raster" but I don’t >> understand how the function calculates values for neighboring cells that >> are located at the raster edge. Here is an example reproducible: focal is a method for the S4 o

Re: [R] Calculate focal values for neighboring cells that are located at the raster edge from the function "focal" in the R package "raster"

R. Whether that is "helpful" is another matter. Cheers, Bert On Fri, Jun 8, 2018, 9:00 AM Marine Regis wrote: > Hello All, > > I am using the function "focal" in the R package "raster" but I don’t > understand how the function calculates values for neighbori

[R] Calculate focal values for neighboring cells that are located at the raster edge from the function "focal" in the R package "raster"

Hello All, I am using the function "focal" in the R package "raster" but I don�t understand how the function calculates values for neighboring cells that are located at the raster edge. Here is an example reproducible: f <- matrix(1, nrow=3, ncol=3) f[c(1,3,7,9)]

Re: [R] package colorspace and .WhitePoint question

Glenn, currently, this is currently not exposed in "colorspace" AFAICS. You can modify it by changing .WhitePoint inside colorspace's NAMESPACE, though: R> assignInNamespace(".WhitePoint", rbind(c(95, 100, 105)), +ns = "colorspace") R> as(XYZ(100, 100, 100), "LAB") LA

[R] package colorspace and .WhitePoint question

In colorspace.R I see: setAs("color", "LAB", function(from) LAB(.Call("as_LAB", from@coords, class(from), .WhitePoint, PACKAGE = " colorspace"), names = dimnames(from@coords)[[1]])) ... .WhitePoint = NULL and then in colorspace.c and the function CheckWhite(), I see

Re: [R] Help About R-Package Portability

'm having an issue with R package configurations which I thought the >community would help me. I have two softwares written in R, DECoN and >panelcn.mops, and need to run both of them isolated. The problem is >that I >couldn't install them onto neither the OS with the sudo permissions

[R] Help About R-Package Portability

Hi, I'm having an issue with R package configurations which I thought the community would help me. I have two softwares written in R, DECoN and panelcn.mops, and need to run both of them isolated. The problem is that I couldn't install them onto neither the OS with the sudo permissions nor

Re: [R] help on the R package Softmaxreg

p ) > > On Mon, May 28, 2018 at 2:30 AM, Rolf Turner > wrote: > >> >> On 28/05/18 18:13, Vy Ong wrote: >> >> Hello, >>> Are there anyone knowing about the Softmaxreg R package? >>> >> >> I suspect that the maintainer of softmaxr

Re: [R] help on the R package Softmaxreg

eley Breathed in his "Bloom County" comic strip ) On Mon, May 28, 2018 at 2:30 AM, Rolf Turner <r.tur...@auckland.ac.nz> wrote: > > On 28/05/18 18:13, Vy Ong wrote: > > Hello, >> Are there anyone knowing about the Softmaxreg R package? >> > > I suspect th

Re: [R] help on the R package Softmaxreg

On 28/05/18 18:13, Vy Ong wrote: Hello, Are there anyone knowing about the Softmaxreg R package? I suspect that the maintainer of softmaxreg (please note the *lower case* "s") "knows about" this package! cheers, Rolf Turner -- Technical Editor ANZJS Department of S

[R] help on the R package Softmaxreg

Hello, Are there anyone knowing about the Softmaxreg R package? I try to understand the mathematics behind its models, by its command softmaxreg, especially the L2 regularized version. Is it regularized on the neural network layers or on the softmax regression layer? Are there any material/article

Re: [R] Package parallel missing from CRAN_package_db

Thank you Ista and Duncan for the swift replies. Regards. ​-- Luís Sent with ProtonMail Secure Email.​ ‐‐‐ Original Message ‐‐‐ On 9 May 2018 4:34 PM, Ista Zahn wrote: > Hi Luís, > > The parallel package is built-in, and so is not distributed via cran. > >

Re: [R] Package parallel missing from CRAN_package_db

Hi Luís, The parallel package is built-in, and so is not distributed via cran. You'll see the same thing for all the built in packages, e.g., > pdb[pdb$Package=="stats",]["Package"] [1] Package <0 rows> (or 0-length row.names) > pdb[pdb$Package=="splines",]["Package"] [1] Package <0 rows> (or

Re: [R] Package parallel missing from CRAN_package_db

On 09/05/2018 8:23 AM, Luí­s Moreira de Sousa via R-help wrote: Dear all, I am using the CRAN_package_db function to determine whether the head versions of certain packages match those I need. The parallel package though, is missing from the database: pdb <- tools:::CRAN_package_db()

[R] Package parallel missing from CRAN_package_db

Dear all, I am using the CRAN_package_db function to determine whether the head versions of certain packages match those I need. The parallel package though, is missing from the database: > pdb <- tools:::CRAN_package_db() > pdb[pdb$Package=="parallel",]["Package"] [1] Package <0 rows> (or

Re: [R] Installing required packages with an R package

eep coming along and > sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > On Mon, May 7, 2018 at 12:22 PM, Jeff Newmiller <jdnew...@dcn.davis.ca.us> > wrote: > >> R-package-devel is the better venue, as r-packa

Re: [R] Installing required packages with an R package

> On May 7, 2018, at 11:06 AM, Polychronis Kostoulas > <polychronis.kostou...@gmail.com> wrote: > > Dear All, > I am preparing an R-package and I would like to ask how do I make it check > whether dependencies (i.e. other packages) are already

Re: [R] Installing required packages with an R package

eff Newmiller <jdnew...@dcn.davis.ca.us> wrote: > R-package-devel is the better venue, as r-packages is only for > announcements. > > On May 7, 2018 12:17:34 PM PDT, Bert Gunter <bgunter.4...@gmail.com> > wrote: > >This is better posted on the R-packages mailing list

Re: [R] Installing required packages with an R package

R-package-devel is the better venue, as r-packages is only for announcements. On May 7, 2018 12:17:34 PM PDT, Bert Gunter <bgunter.4...@gmail.com> wrote: >This is better posted on the R-packages mailing list, not here. > >Cheers, >Bert > >Bert Gunter > >"T

Re: [R] Installing required packages with an R package

7, 2018 at 11:06 AM, Polychronis Kostoulas < polychronis.kostou...@gmail.com> wrote: > Dear All, > I am preparing an R-package and I would like to ask how do I make it check > whether dependencies (i.e. other packages) are already installed in a > machine and if they are not installe

[R] Installing required packages with an R package

Dear All, I am preparing an R-package and I would like to ask how do I make it check whether dependencies (i.e. other packages) are already installed in a machine and if they are not installed to automatically install them during its installation. Thanks, Polychronis Polychronis Kostoulas

Re: [R] Package for Molecular Properties

On Thu, 3 May 2018, Bert Gunter wrote: ... In addition, you may wish to also post on the Bioconductor list for this sort of thing. ... where "this sort of thing" is the original subject matter "molecular properties" rather than the sidebar about the sos package which is probably better

Re: [R] Package for Molecular Properties

... In addition, you may wish to also post on the Bioconductor list for this sort of thing. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, May 3,

Re: [R] Package for Molecular Properties

> On May 3, 2018, at 12:58 AM, Spencer Graves > wrote: > > > library(sos) > > > (mp <- findFn('{molecular properties}')) > > > ** found 7 matches in 4 packages and opened two web pages in my default > browser with (a) the 7 matches and (b) the 4

[R] Package for Molecular Properties

Hi Spencer Thank you for your suggestion. I tried sos -- Is it actually supposed to actually list out the functions along with the packages? This is what I got: found 7 matches Downloaded 7 links in 4 packages. Ignoring template. Warning messages: 1: In file(templateFile, encoding =

Re: [R] Package for Molecular Properties

library(sos) (mp <- findFn('{molecular properties}'))   ** found 7 matches in 4 packages and opened two web pages in my default browser with (a) the 7 matches and (b) the 4 packages. The first function was something for amino acids, like you suggested.  Two others returned compound

[R] Package for Molecular Properties

All Is there a package or library that will, given a nucleotide sequence 1. calculate the extinction coefficient at 260 nm for (Beer-Lambert's law) 2. calculate molecular weight 3. return it's complementary sequence I was able to find several packages that can do similar calculations for an

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

ks, Roger -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Fox, John Sent: Friday, April 27, 2018 9:21 AM To: Akhilesh Singh Cc: r-help mailing list Subject: Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed Dear Akhilesh, I hope

[R] Package ddalpha is not building for me in R 3.5.0

I was updating packages after upgrading R to 3.5.0 and one package, ddalpha, that is dependency for caret is not building. All the compiled code builds but something seems to start going wrong at the byte-compile stage. Here is the error and sessionInfo(). My computer has 8 GB of RAM, by the

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

l the work for you. Thanks, Roger -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Fox, John Sent: Friday, April 27, 2018 9:21 AM To: Akhilesh Singh Cc: r-help mailing list Subject: Re: [R] Package 'data.table' in version R-3.5.0 not successfully being

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

> -Original Message- > From: Akhilesh Singh [mailto:akhileshsingh.i...@gmail.com] > Sent: Friday, April 27, 2018 4:10 AM > To: Fox, John <j...@mcmaster.ca> > Cc: r-help mailing list <r-help@r-project.org> > Subject: Re: [R] Package 'data.table' in version R-3.5.0 not suc

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

;; Fox, John <j...@mcmaster.ca> > Subject: Re: [R] Package 'data.table' in version R-3.5.0 not successfully > being > installed > > Hmm, looks like that thread has more noise than signal... > > AFAICT, data.table currently fails selftests i 3.5.0 on all platforms on the

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

t;>> >>>>> >>>>> With regards, >>>>> >>>>> Dr. A.K. Singh >>>>> >>>>> On Thu 26 Apr, 2018, 9:44 PM Duncan Murdoch, <murdoch.dun...@gmail.com >>>>> <mailto:murdoch.dun...@gmail.com&

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

> Dear A.K. Singh, > > As you discovered, the data.table package has an error under R 3.5.0 that prevents CRAN from distributing a Windows binary for the package. The reason that you weren't able to install the package from source is apparently that you haven't installed

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

26 Apr, 2018, 9:44 PM Duncan Murdoch, <murdoch.dun...@gmail.com >> > <mailto:murdoch.dun...@gmail.com>> wrote: >> > >> > On 26/04/2018 10:33 AM, Fox, John wrote: >> > > Dear A.K. Singh, >> > > >> > > As you

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

vents CRAN from distributing a Windows binary for the > > package. The reason that you weren't able to install the package > > from source is apparently that you haven't installed the R > > package-building tools for Windows. See > > <https://cran.r-project.org

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

The > reason that you weren't able to install the package from source is > apparently that you haven't installed the R package-building tools for > Windows. See <https://cran.r-project.org/bin/windows/Rtools/>. > > > > Because a number of users of my Rcmdr

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

> On Apr 26, 2018, at 5:07 AM, Akhilesh Singh > wrote: > > Dear Sir, > > I am using R on Windows OS platform. I upgraded my R-system to version > R-3.5.0. While upgrading my libraries in R as well as in RStudio, I am > stuck up in the package 'data.table', which

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

gt; As you discovered, the data.table package has an error under R 3.5.0 that prevents CRAN from distributing a Windows binary for the package. The reason that you weren't able to install the package from source is apparently that you haven't installed the R package-building tools for Wi

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

r.ca>; Akhilesh Singh > <akhileshsingh.i...@gmail.com> > Cc: r-help mailing list <r-help@r-project.org> > Subject: Re: [R] Package 'data.table' in version R-3.5.0 not > successfully being installed > > On 26/04/2018 10:33 AM, Fox, John wrote: > > Dear A.K. Si

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

haven't installed the R package-building tools for Windows. See <https://cran.r-project.org/bin/windows/Rtools/>. Because a number of users of my Rcmdr and car packages have contacted me with a similar issue, as a temporary work-around I've placed a Windows binary for the data.table package

Re: [R] Package 'data.table' in version R-3.5.0 not successfully being installed

Dear A.K. Singh, As you discovered, the data.table package has an error under R 3.5.0 that prevents CRAN from distributing a Windows binary for the package. The reason that you weren't able to install the package from source is apparently that you haven't installed the R package-building tools

[R] Package 'data.table' in version R-3.5.0 not successfully being installed

Dear Sir, I am using R on Windows OS platform. I upgraded my R-system to version R-3.5.0. While upgrading my libraries in R as well as in RStudio, I am stuck up in the package 'data.table', which is required by many other packages in R-codes in my R-Markdown files. I tried to install

Re: [R] Package 'pd.mirna.1.0.2xgain' was not found in the BioConductor repository

> On Mar 20, 2018, at 11:49 PM, Persian Irani wrote: > > Hi all! > > While I am trying to read .cel files with oligo package: > > afbatch=read.celfiles(list.celfiles()) > > I get an error: > Package 'pd.mirna.1.0.2xgain' was not found in the BioConductor repository

[R] Package 'pd.mirna.1.0.2xgain' was not found in the BioConductor repository

Hi all! While I am trying to read .cel files with oligo package: afbatch=read.celfiles(list.celfiles()) I get an error: Package 'pd.mirna.1.0.2xgain' was not found in the BioConductor repository How can I overcome this? Thank you in advance __

Re: [R] Documenting R package with Rd file

On 14/03/2018 6:10 AM, Steven Yen wrote: I have trouble documenting an R package. In my .Rd file (sixth line below), I have uhat<-m%*%y but when the package is built (successfully), the matrix multiplication part does not show up in the documentation. The line become (missing %*

[R] Documenting R package with Rd file

I have trouble documenting an R package. In my .Rd file (sixth line below), I have uhat<-m%*%y but when the package is built (successfully), the matrix multiplication part does not show up in the documentation. The line become (missing %*% y) uhat<-m === \examples{ x<-c(1,2,3,

[R] [R-pkgs] pathfindR: An R Package for Pathway Enrichment Analysis Utilizing Active Subnetworks

Hello all, I would like to introduce our group's new bioinformatics package to you: pathfindR This tool is designed to improve pathway enrichment analysis by firstly identifying active subnetworksin differential expression/methylation data using a

[R] Package gamlss used inside foreach() and %dopar% fails to find an object

gmail.com> To: r-help@r-project.org Cc: Nik ntuzov.com> Subject: [R] . Package gamlss used inside foreach() and %dopar% fails to find an object (Nik Tuzov) Message-ID: <424dc535-4caf-4dd5-8bd5-eb19bf6f7...@staff.londonmet.ac.uk> Content-Type: text/plain; charset="u

[R] . Package gamlss used inside foreach() and %dopar% fails to find an object (Nik Tuzov)

Dear Nik Try the following code loo_predict.mu <- function(model.obj, input.data) { yhat <- foreach(i = 1 : nrow(input.data), .packages="gamlss", .combine = rbind) %dopar% { updated.model.obj <- update(model.obj, data = input.data[-i, ]) predict(updated.model.obj, what = "mu", data

Re: [R] Package gamlss used inside foreach() and %dopar% fails to find an object

roject.org>, "Nik Tuzov" <ntu...@beacon.partek.com> Sent: Friday, March 9, 2018 11:16:21 AM Subject: Re: [R] Package gamlss used inside foreach() and %dopar% fails to find an object If the code you are running in parallel is complicated, maybe foreach is not sophisticated enough t

Re: [R] Package gamlss used inside foreach() and %dopar% fails to find an object

If the code you are running in parallel is complicated, maybe foreach is not sophisticated enough to find all the variables you refer to. Maybe use parallel::clusterExport yourself? But be a aware that passing parameters is much safer than directly accessing globals in parallel processing, so

[R] Package gamlss used inside foreach() and %dopar% fails to find an object

Hello all: Please help me with this "can't find object" issue. I'm trying to get leave-one-out predicted values for Beta-binomial regression. It may be the gamlss issue because the code seems to work when %do% is used. I have searched for similar issues, but haven't managed to figure it out.

Re: [R] package installation

There is the directory that the compressed file gets downloaded (Temp), and there is another directory where the the extracted files are "installed" ("library"). You can read all about this in the "R Administration and Installation Manual" that comes with R. The message about the download

Re: [R] package installation

ine via R-help > Sent: Tuesday, March 6, 2018 9:57 AM > To: r-help@r-project.org > Subject: [R] package installation > > Hi, When installing packages is there any preferable path. > In my case I got this message in R consol:The downloaded binary packages are > in

[R] package installation

Hi, When installing packages is there any preferable path. In my case I got this message in R consol:The downloaded binary packages are in         C: ~\ Temp \ RtmpQLTD5e \ downloaded_packages this is a temporary files that I delete every time. Is it possible to install packages in a specefic

Re: [R] Include pre-existing PDF files as vignettes in an R package?

Exporting to LaTeX is a good idea. Thanks, guys. On Mon, Feb 19, 2018 at 4:22 AM, stephen sefick wrote: > Yes, 'C-c C-e l l' I think, but follow the pop-up, and everything should be > ok. > > On Feb 19, 2018 07:05, "Rainer Krug" wrote: > >> >> >> >

Re: [R] Include pre-existing PDF files as vignettes in an R package?

Yes, 'C-c C-e l l' I think, but follow the pop-up, and everything should be ok. On Feb 19, 2018 07:05, "Rainer Krug" wrote: > > > > On 19 Feb 2018, at 12:25, Duncan Murdoch > wrote: > > > > On 19/02/2018 5:47

Re: [R] Include pre-existing PDF files as vignettes in an R package?

> On 19 Feb 2018, at 12:25, Duncan Murdoch > wrote: > > On 19/02/2018 5:47 AM, Michael Hannon wrote: >> Thanks, Duncan. The files in question are Emacs Org-mode files, and I >> think these are more or less isomorphic to Rmd files,

Re: [R] Include pre-existing PDF files as vignettes in an R package?

On 19/02/2018 5:47 AM, Michael Hannon wrote: Thanks, Duncan. The files in question are Emacs Org-mode files, and I think these are more or less isomorphic to Rmd files, but I haven't used Org-mode in a long time, so I think the mapping (Org-mode ==> Rmd) would be painful. If they aren't LaTeX

Re: [R] Include pre-existing PDF files as vignettes in an R package?

Thanks, Duncan. The files in question are Emacs Org-mode files, and I think these are more or less isomorphic to Rmd files, but I haven't used Org-mode in a long time, so I think the mapping (Org-mode ==> Rmd) would be painful. -- Mike On Mon, Feb 19, 2018 at 1:20 AM, Duncan Murdoch

Re: [R] Include pre-existing PDF files as vignettes in an R package?

Heh. Thanks, Ista, for your diplomatically-phrased suggestion :-) In fact, I *did* read the "vignettes" section of the Extensions manual, but evidently not closely enough. Upon further review, I see that one can use ".../vignettes/.install_extras" to list additional files that should be copied

Re: [R] Include pre-existing PDF files as vignettes in an R package?

On 18/02/2018 9:06 PM, Michael Hannon wrote: Greetings. The group that I work with has just started using the approach outlined in Karl Broman's handy primer: http://kbroman.org/pkg_primer/pages/vignettes.html to create vignettes for a couple of R packages. This works fine as long as we

Re: [R] Include pre-existing PDF files as vignettes in an R package?

Hi Mike, Did you read the relevant section of the official "Writing R Extensions" manual? If so, what about the instructions provided there do you find lacking? Best, Ista On Sun, Feb 18, 2018 at 9:06 PM, Michael Hannon wrote: > Greetings. The group that I work

[R] Include pre-existing PDF files as vignettes in an R package?

Greetings. The group that I work with has just started using the approach outlined in Karl Broman's handy primer: http://kbroman.org/pkg_primer/pages/vignettes.html to create vignettes for a couple of R packages. This works fine as long as we have a current Rmd version of the vignette.

Re: [R] package MonteCarlo error: object 'packages' not found

Will do, Bert. Thank you, John On 2/15/2018 11:58 AM, Bert Gunter wrote: > This looks like the sort of thing that you should ask the package > maintainer (?maintainer). > > Cheers, > Bert > > > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along > and

Re: [R] package MonteCarlo error: object 'packages' not found

This looks like the sort of thing that you should ask the package maintainer (?maintainer). Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu,

[R] package MonteCarlo error: object 'packages' not found

R-users, I can't tell what's causing the following error. The vignette does not make a reference to a "packages" option or parameter. > library(MonteCarlo) Loading required package: abind Loading required package: codetools Loading required package: rlecuyer Loading required package: snow

Re: [R] Package sgd

For that matter, a simple within-browser search for "gradient" on the CRAN packages-by-name webpage, finds Gradient Descent for Regression Tasks Holonomic Gradient Method and Gradient Descent Continuous Generalized Gradient Descent And a few more that might or might not be relevant.

Re: [R] Package sgd

A web search on "gradient descent R" also brought up a bunch of stuff. Is any of this what you want? Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )

Re: [R] Package sgd

1. It might help if you could state more specifically what you want to do. 2. Maybe check here if you haven't already done so: https://cran.r-project.org/web/views/ Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it."

[R] Package sgd

Good morning, Is there a package that replaces the sgd package to explore the Gradient Descent (SGD) t echnique ? Best regards, *~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~ Tony *~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~* [[alternative HTML version deleted]]

[R] [R-pkgs] new R package bigleaf

Dear R users, we are pleased to announce the release of the 'bigleaf' R package. This package is useful for the calculation of physical (e.g. aerodynamic conductance, surface temperature), and physiological (e.g. canopy conductance, intrinsic water-use efficiency) ecosystem properties from

Re: [R] Help making first dataset R package

t; Hi, > > I am trying to make my first R package containing only a single > data.frame and documentation. > > All code can be found at: > https://github.com/MartinMSPedersen/folkeafstemninger > > When I check the package I get four warnings. > I will list a

Re: [R] Help making first dataset R package

I think this would fit better on the r-package-devel list. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed, Jan 17, 201

[R] Help making first dataset R package

Hi, I am trying to make my first R package containing only a single data.frame and documentation. All code can be found at: https://github.com/MartinMSPedersen/folkeafstemninger When I check the package I get four warnings. I will list all warnings in this email because they migth

Re: [R] package : plm : pgmm question

Please talk to the package maintainer whi may not be listen on R-help. Best, Uwe Ligges On 25.12.2017 10:53, Ye Dong wrote: Dear Sir, I am using the package pgmm you build in panel regression. However, I found that when T is 10, N=30, the error would show as following: system is

[R] package : plm : pgmm question

Dear Sir, I am using the package pgmm you build in panel regression. However, I found that when T is 10, N=30, the error would show as following: system is computationally singular: reciprocal condition number But the similar code works well on Stata, so I wonder how I can optimize the

Re: [R] Creating a SQL R package

Joao, On 15 November 2017 at 05:39, João Paulo Lemes Machado < lemesmach...@gmail.com> wrote: > I intend to create a package for the R that > makes the SQL language commands available for use. What do you think? Any > tips on > where to start? > https://github.com/ggrothendieck/sqldf seems to

[R] Creating a SQL R package

Hello everyone. My name is João Paulo I am a master's student in the course of omputer science. I intend to create a package for the R that makes the SQL language commands available for use. I know that there are already some packages that execute SQL commands within R. However, most of these

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