[R] SamplingStrata R package

2017-11-02 Thread Chris S
Hi all I am hoping to use the SamplingStrata R package for a dataset describing a population of businesses wherein I have information on the type of business, as well as, for designated employment number bands, number of employees and business turnover information. So ideally the stratification

Re: [R] SamplingStrata R package

2017-10-31 Thread Bert Gunter
gt; >> Bert Gunter >> >> "The trouble with having an open mind is that people keep coming along >> and sticking things into it." >> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) >> >> On Tue, Oct 31, 2017 at 4:43 AM,

Re: [R] SamplingStrata R package

2017-10-31 Thread Chris S
t;The trouble with having an open mind is that people keep coming along and > sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > On Tue, Oct 31, 2017 at 4:43 AM, Chris S <cjsilw...@gmail.com> wrote: > >> Hi all >&

Re: [R] SamplingStrata R package

2017-10-31 Thread Bert Gunter
y Breathed in his "Bloom County" comic strip ) On Tue, Oct 31, 2017 at 4:43 AM, Chris S <cjsilw...@gmail.com> wrote: > Hi all > > I am hoping to use the SamplingStrata R package for a dataset describing a > population of businesses wherein I have information on the type of

[R] SamplingStrata R package

2017-10-31 Thread Chris S
Hi all I am hoping to use the SamplingStrata R package for a dataset describing a population of businesses wherein I have information on the type of business, as well as, for designated employment number bands, number of employees and business turnover information. So in this context

Re: [R] Help in R package

2017-10-06 Thread David Winsemius
> On Oct 5, 2017, at 7:19 PM, Akram Alhadainy <akram2004ha...@gmail.com> wrote: > > Hello, > > I watched your YouTube videos for explanation for R package. Rhelp is a mailing list. It does not release Youtube videos. > They are > really helpful for new beginner for

[R] [R-pkgs] 'coinmarketcapr' R Package to access coinmarketcap API

2017-10-03 Thread AMR RS
Hello Rusers, 'coinmarketcapr' R Package to extract bitcoin and other cryptocurrencies market cap and prices from coinmarketcap API. Welcoming Suggestions and Contributions! https://github.com/amrrs/coinmarketcapr https://cran.r-project.org/package=coinmarketcapr Thanks and Regards, Abdul

Re: [R] Add wrapper to Shiny in R package

2017-09-21 Thread Duncan Murdoch
/// 2017-09-21 15:02 GMT+02:00 Axel Urbiz <axel.ur...@gmail.com>: Dear List, I'm trying to add a function that calls a Shiny App in my R package. The issue is that within my function, I'm creating objects that I'd like to pass to

Re: [R] Add wrapper to Shiny in R package

2017-09-21 Thread Axel Urbiz
73, 1000 > Brussel. > > //// > /// > > > > 2017-09-21 15:02 GMT+02:00 Axel Urbiz <axel.ur...@gmail.com>: > > Dear List, > > > > I'm trying to add a function that cal

Re: [R] Add wrapper to Shiny in R package

2017-09-21 Thread Jeff Newmiller
3, 1000 >Brussel. > >/////// > > > >2017-09-21 15:02 GMT+02:00 Axel Urbiz <axel.ur...@gmail.com>: >> Dear List, >> >> I'm trying to add a function that calls a Shiny A

Re: [R] Add wrapper to Shiny in R package

2017-09-21 Thread Thierry Onkelinx
t;: > Dear List, > > I'm trying to add a function that calls a Shiny App in my R package. The > issue is that within my function, I'm creating objects that I'd like to > pass to the app. For instance, from the example below, I'm getting > "Error: object > 'xs' not foun

[R] Add wrapper to Shiny in R package

2017-09-21 Thread Axel Urbiz
Dear List, I'm trying to add a function that calls a Shiny App in my R package. The issue is that within my function, I'm creating objects that I'd like to pass to the app. For instance, from the example below, I'm getting "Error: object 'xs' not found". How can I pass "xs" ex

[R] [R-pkgs] Update to R package envDocument

2017-09-20 Thread Jackson (Genomics), Donald
An updated version of my envDocument package is now available on CRAN at https://CRAN.R-project.org/package=envDocument with code at https://github.com/dgJacks0n/envDocument/tree/V_2.4.0 The main function from this package, env_doc(), provides a detailed, automated report on the environment

Re: [R] Shiny App inside R Package

2017-09-17 Thread Marc Girondot via R-help
I have this working in my package embryogrowth available in CRAN. I have a function to call the shiny app: web.tsd <- function() {   if (!requireNamespace("shiny", quietly = TRUE)) {     stop("shiny package is absent; Please install it first")   } getFromNamespace("runApp", ns="shiny")(appDir

Re: [R] Shiny App inside R Package

2017-09-17 Thread Thierry Onkelinx
Dear Axel, I tend to place Shiny apps in the "inst" directory of the package. See https://stackoverflow.com/questions/37830819/developing-shiny-app-as-a-package-and-deploying-it-to-shiny-server Best regards, ir. Thierry Onkelinx Statisticus/ Statiscian Vlaamse Overheid / Government of Flanders

[R] Shiny App inside R Package

2017-09-17 Thread Axel Urbiz
Dear List, I have a wrapper function that creates a Shiny App, as illustrated below. I'd like to include the function myApp() inside a package. I'd appreciate your guidance here, as I could not find good instructions on this online. myApp <- function(x) { require(shiny) shinyApp( ui =

Re: [R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread Jeff Newmiller
I think you should consider whether the advantages of making an object-aware collections class are worth the effort... lists are the standard tool for this task in R, and are normally handled using the functional programming paradigm. Just make sure a sufficiently-complete set of methods are

Re: [R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread Alexander Shenkin
Did you read this? https://cran.r-project.org/doc/contrib/Leisch-CreatingPackages.pdf Maybe it could give you some insight in how to create package. That resource is ~9 years old. There are more modern treatments available. You can read mine at http://r-pkgs.had.co.nz. Hadley Thanks both.

Re: [R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread PIKAL Petr
l.edu>; r-help <r-help@r-project.org> > Subject: Re: [R] To implement OO or not in R package, and if so, how to > structure it? > > > Did you read this? > > https://cran.r-project.org/doc/contrib/Leisch-CreatingPackages.pdf > > > > Maybe it could give you so

Re: [R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread Hadley Wickham
> Did you read this? > https://cran.r-project.org/doc/contrib/Leisch-CreatingPackages.pdf > > Maybe it could give you some insight in how to create package. That resource is ~9 years old. There are more modern treatments available. You can read mine at http://r-pkgs.had.co.nz. Hadley --

Re: [R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread Hadley Wickham
I am trying to decide how to structure an R package. Specifically, do I use > OO classes, or just provide functions? If the former, how should I > structure the objects in relation to the type of data the package is > intended to manage? > > I have searched for, but haven't found, resources

Re: [R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread PIKAL Petr
Hi I do not consider myself as an expert in field of R package programming but if your data are rectangular, why not use data.frames. OTOH if they are structured in free form (something like lm result) you could use lists. Did you read this? https://cran.r-project.org/doc/contrib/Leisch

[R] To implement OO or not in R package, and if so, how to structure it?

2017-09-14 Thread Alexander Shenkin
Hello all, I am trying to decide how to structure an R package. Specifically, do I use OO classes, or just provide functions? If the former, how should I structure the objects in relation to the type of data the package is intended to manage? I have searched for, but haven't found

[R] FW: Predictive accuracy measures in a recently released R package, spm: Spatial Predictive Modelling [SEC=UNCLASSIFIED]

2017-08-30 Thread Li Jin
Hi All, Just thought you might be interested in a recently released R package, spm: Spatial Predictive Modelling. It aims to introduce some novel, accurate, hybrid geostatistical and machine learning methods for spatial predictive modelling. Of 22 functions available in spm, two functions

Re: [R] package building problem Centos 7 & R 3.4.1

2017-08-12 Thread Paul Johnson
On Aug 12, 2017 11:58 AM, "José Abílio Matos" wrote: On Friday, 11 August 2017 22.51.12 WEST Paul Johnson wrote: > Dear everybody: > > Packages that DO pass the package check on my Ubuntu 17.04 laptop with > R 3.4.1 and Mac OSX do not build on Centos 7 with R 3.4.1. I'm

Re: [R] package building problem Centos 7 & R 3.4.1

2017-08-12 Thread José Abílio Matos
On Friday, 11 August 2017 22.51.12 WEST Paul Johnson wrote: > Dear everybody: > > Packages that DO pass the package check on my Ubuntu 17.04 laptop with > R 3.4.1 and Mac OSX do not build on Centos 7 with R 3.4.1. I'm pretty > sure I have an environment defect, but cannot find it. Hi Paul,

Re: [R] Package sqldf in R and dates manipulation

2017-08-12 Thread Mangalani Peter Makananisa
: [R] Package sqldf in R and dates manipulation See FAQ #4 on the sqldf github home page. On Fri, Aug 11, 2017 at 9:21 AM, Mangalani Peter Makananisa <pmakanan...@sars.gov.za> wrote: > Dear all, > > I recently read the book " R data preperation and manipulation using > s

[R] package building problem Centos 7 & R 3.4.1

2017-08-11 Thread Paul Johnson
Dear everybody: Packages that DO pass the package check on my Ubuntu 17.04 laptop with R 3.4.1 and Mac OSX do not build on Centos 7 with R 3.4.1. I'm pretty sure I have an environment defect, but cannot find it. I find posts from various people about this problem since 2012. But I've checked

Re: [R] Package nleqslv ERROR

2017-08-11 Thread Berend Hasselman
Just to set things straight: The error message "Error in nleqslv(xstart, fun) : Length of fn result <> length of x!" is issued by the underlying nleqslv C function. refers to the second argument of function nleqslv which is named fn. It is not issued by R itself. Other have already pointed

Re: [R] Package sqldf in R and dates manipulation

2017-08-11 Thread Gabor Grothendieck
See FAQ #4 on the sqldf github home page. On Fri, Aug 11, 2017 at 9:21 AM, Mangalani Peter Makananisa wrote: > Dear all, > > I recently read the book " R data preperation and manipulation using sqldf > package" by Djoni Darmawikarta > However, I have a problem with

Re: [R] Package sqldf in R and dates manipulation

2017-08-11 Thread Mangalani Peter Makananisa
Dear all, I recently read the book " R data preperation and manipulation using sqldf package" by Djoni Darmawikarta However, I have a problem with manipulation of dates using this package, I do not get the expected results. Do I need to install some packages to be able to subset the data by

Re: [R] Package nleqslv ERROR

2017-08-09 Thread J C Nash
Maybe it's simpler to point out that nonlinear EQUATIONS need n equations for n unknowns. 4 only equals 2 through the looking glass. Alternatively, maybe the OP wants to adjust the 2 parameters to best fit the 4 relationships, in which case nlsr package function nlfb() would be appropriate.

Re: [R] Package nleqslv ERROR

2017-08-09 Thread Mark Sharp
Santi, In the second line of your function you have the following: f <- numeric(length(x)) This sets the length of this numeric vector (i.e., "f") to the length of the vector "x". Later, inside the function you assign to values to 4 elements of the vector "f". This assumes that "f" is at least

[R] Package nleqslv ERROR

2017-08-09 Thread Santi Burone
Dear all, I am relatively new to R and have had some difficulty in understanding an error i get when running a code to solve a system of non-linear equations, with four equations and two variables. This is my code: ALPHA <- c(-0.0985168033402, 0.1, 0.15, 0.2, 0.25, 0.3, 0.35, 0.4) BETA <-

Re: [R] R-Package for Recursive Partitioning without Classification or Regression

2017-08-01 Thread Michal Kubista
Hello Tom, what you describe seems like using hierarchical clustering and plotting a dendrogram to me, even though only in the "visual" way, not in the math behind the algorithms. Are you looking for something like this? https://rpubs.com/gaston/dendrograms Just please note, that this is very

Re: [R] R-Package for Recursive Partitioning without Classification or Regression

2017-07-31 Thread David L Carlson
] R-Package for Recursive Partitioning without Classification or Regression Hello, I have a question related to recursive partitioning, but I cannot find an answer, likely because I don't know how to properly word my Google search query. All recursive partitioning examples, which I can find

Re: [R] R-Package for Recursive Partitioning without Classification or Regression

2017-07-31 Thread Achim Zeileis
On Fri, 28 Jul 2017, Tom D. Harray wrote: Hello, I have a question related to recursive partitioning, but I cannot find an answer, likely because I don't know how to properly word my Google search query. I think you are looking for "divisive hierarchical clustering" which is the more

Re: [R] R-Package for Recursive Partitioning without Classification or Regression

2017-07-28 Thread Bert Gunter
Tom: Recursive partitioning requires a response variable because splitting criteria are based on node purity/homogeneity (by various criteria) of the responses. So why did you not just search on "clustering" (e.g. at rseek.org)? And in particular, have you looked at the CRAN task view on

[R] R-Package for Recursive Partitioning without Classification or Regression

2017-07-28 Thread Tom D. Harray
Hello, I have a question related to recursive partitioning, but I cannot find an answer, likely because I don't know how to properly word my Google search query. All recursive partitioning examples, which I can find, are used for either classification or regression trees like library(tree)

[R] [R-pkgs] R package hypred: Simulation of genomic data in applied genetics

2017-07-09 Thread Khabat Kheirabadi
Dear Frank, I hope everything is well with you. ​ ​First of all​ ​, I​ ​'d like thank you for your nice genomic simulation program (*hypred *package) and also for taking your time to answer my question. Dear Frank, I'm a PhD student of animal breeding science from Iran. Unfortunately although I

Re: [R] package to fit mixtures of student-t distributions

2017-07-02 Thread vare vare via R-help
Thanks Ranjan, that provides exactly what I need. I also got a more elaborate answer on stackoverflow (after the same question got rejected form cross validated…) with a running example for this package:

Re: [R] Questions regarding to JohnSonFit() in the R package Johnson {SuppDists}

2017-06-30 Thread William Dunlap via R-help
This happens for some inputs, e.g., > JohnsonFit(c(2,3,4,5,6,7,8,30,50,300)) Error in JohnsonFit(c(2, 3, 4, 5, 6, 7, 8, 30, 50, 300)) : Unbounded solution intermediate values out of range The usual recommendation is to contact the maintainer of the package but that isn't possible in this

[R] Questions regarding to JohnSonFit() in the R package Johnson {SuppDists}

2017-06-30 Thread Shiner Yang
Hello, I was trying to fit a Johnson curve by first figuring out the parameter estimates using JohosnFit of a vector by a group ID using the aggregate function. I.E. aggregate(x, by = list(ID), JohnsonFit) where x is the variable I am trying to perform JohnsonFit on. It is a continuous random

Re: [R] package to fit mixtures of student-t distributions

2017-06-30 Thread David Winsemius
> On Jun 29, 2017, at 10:02 AM, vare vare via R-help > wrote: > > I don’t see how neither a) or b) applies to this question nor the technical > merit of the remark about mixture models. > > Do you have a suggestion for a more appropriate forum for this issue/question?

Re: [R] package to fit mixtures of student-t distributions

2017-06-30 Thread Ingmar Visser
gamlss.mx can fit these I believe (although no experience with these myself) flexmix may be (relatively easily) adaptable to accomplish this as well hth, Ingmar Ingmar Visser Universitair Hoofddocent ontwikkelingspsychologie | Directeur College Psychologie Afdeling Psychologie | Faculteit

Re: [R] package to fit mixtures of student-t distributions

2017-06-29 Thread Mark Leeds
Hi: The R package below may be of use to you. https://journal.r-project.org/archive/2009-1/RJournal_2009-1_Ardia+et+al.pdf On Thu, Jun 29, 2017 at 12:15 PM, Ranjan Maitra <mai...@email.com> wrote: > Would package "teigen" help? > > Ranjan > > On Thu, 29 Jun 2017

Re: [R] package to fit mixtures of student-t distributions

2017-06-29 Thread vare vare via R-help
I don’t see how neither a) or b) applies to this question nor the technical merit of the remark about mixture models. Do you have a suggestion for a more appropriate forum for this issue/question? (stackoverflow basically sent me here). Kind regards > On 29. Jun 2017, at 16:58, Bert Gunter

Re: [R] package to fit mixtures of student-t distributions

2017-06-29 Thread Ranjan Maitra
Would package "teigen" help? Ranjan On Thu, 29 Jun 2017 14:41:34 +0200 vare vare via R-help wrote: > Hello! > > I am new to R (before used python exclusively and would actually call the R > solution for this issue inside a python notebook, hope that doesn’t >

Re: [R] package to fit mixtures of student-t distributions

2017-06-29 Thread Bert Gunter
Offlist, because this is (a) an opinion and (b) about statistics and therefore offtopic. I don't know whether any such package exists, but I would predict that this is likely to be overdetermined (too many parameters) and therefore unlikely to be a successful strategy. Fitting a mixture of

[R] package to fit mixtures of student-t distributions

2017-06-29 Thread vare vare via R-help
Hello! I am new to R (before used python exclusively and would actually call the R solution for this issue inside a python notebook, hope that doesn’t disqualify me right of the batch). Right now I am looking for a piece of software to fit a 1D data sample to a mixture of t-distributions.

Re: [R] R package for scorecard development

2017-06-29 Thread Michael Friendly
to compare it with a logistic model. -Michael On 6/28/17 1:26 PM, Nikhil Abhyankar wrote: Hello all, Is there any R package that can develop a scorecard model for a binary target variable? More details: I want to create a scorecard based on the raw data I have. I have a binary target variable

Re: [R] R package for scorecard development

2017-06-29 Thread Suzen, Mehmet
I suggest you to have a look at this R document: https://cran.r-project.org/doc/contrib/Sharma-CreditScoring.pdf On 28 June 2017 at 13:26, Nikhil Abhyankar <nikhil.abhyan...@gmail.com> wrote: > Hello all, > > Is there any R package that can develop a scorecard model for a binary &g

[R] R package for scorecard development

2017-06-28 Thread Nikhil Abhyankar
Hello all, Is there any R package that can develop a scorecard model for a binary target variable? More details: I want to create a scorecard based on the raw data I have. I have a binary target variable and a few numeric and character input variables. I want to bin the variables and assign

[R] [R-pkgs] New R package MittagLeffleR

2017-06-26 Thread Peter Straka
Dear all, apologies for interrupting your important work. The new R package MittagLeffleR is now available on CRAN. It computes the two types of Mittag-Leffler distributions, i.e. provides probability density, distribution function, quantile function and random variate generation for the Mittag

[R] [R-pkgs] New R package on CRAN: sfadv (v 1.0.1)

2017-06-23 Thread Yann Desjeux
Dear R users, I am happy to announce that the R package 'sfadv: Advanced Methods for Stochastic Frontier Analysis' is now available on CRAN (https://CRAN.R-project.org/package=sfadv). This package allows stochastic frontier analysis with advanced methods. Particularly it implements newly

Re: [R] R package recommendation - recursively partition data frame, calculate summaries of node data frames, plot and print summaries

2017-05-30 Thread Ismail SEZEN
Hello Ross, > On 30 May 2017, at 14:51, Ross Gayler <r.gay...@gmail.com> wrote: > > I am after R package recommendations. > > I have a data frame with ~5 million rows and ~50 columns. (I could do what > I want with a sample of the rows, but ideally i would use all the ro

Re: [R] R package recommendation - recursively partition data frame, calculate summaries of node data frames, plot and print summaries

2017-05-30 Thread Bert Gunter
t;The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Tue, May 30, 2017 at 4:51 AM, Ross Gayler <r.gay...@gmail.com> wrote: > I am after R package recommendati

[R] R package recommendation - recursively partition data frame, calculate summaries of node data frames, plot and print summaries

2017-05-30 Thread Ross Gayler
I am after R package recommendations. I have a data frame with ~5 million rows and ~50 columns. (I could do what I want with a sample of the rows, but ideally i would use all the rows.) (1) I want to recursively partition the rows of the data frame in a way that I manually specify. That is, I

Re: [R] Package Query

2017-04-05 Thread Jim Lemon
Hi Ruchika, Maybe the hdeco package will help. Jim On Wed, Apr 5, 2017 at 2:28 PM, Ruchika Salwan wrote: > Hey, > > Is there any package in R that handles graph decomposition? A package > created specifically for flat/hierarchical decomposition of graphs. > > Thanks,

Re: [R] Package Query

2017-04-05 Thread Jeff Newmiller
There is a package called sos that helps you answer such questions yourself. There are also Task View pages on CRAN that help you identify useful packages. -- Sent from my phone. Please excuse my brevity. On April 4, 2017 9:28:32 PM PDT, Ruchika Salwan wrote: >Hey,

Re: [R] Package Query

2017-04-05 Thread Bert Gunter
On the rseek.org search site, "graph decomposition" brought up what looked like some relevant hits. So search there if you haven't done so already. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka

[R] Package Query

2017-04-05 Thread Ruchika Salwan
Hey, Is there any package in R that handles graph decomposition? A package created specifically for flat/hierarchical decomposition of graphs. Thanks, [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE

Re: [R] R package

2017-03-23 Thread Ulrik Stervbo
Hi Elahe, maybe the us.cities() in the maps package is what you look for. HTH Ulrik On Thu, 23 Mar 2017 at 11:34 Elahe chalabi via R-help wrote: > Hi all, > > I have a data frame containing serial numbers for US. I also have a column > showing the city in US, now my

[R] R package

2017-03-23 Thread Elahe chalabi via R-help
Hi all, I have a data frame containing serial numbers for US. I also have a column showing the city in US, now my question is is there a package in R able to get the city in US as input and then return the name of State for that city?! Thanks for any help! Elahe

[R] Optimum number of PC and observations in Elasticnet R package

2017-03-18 Thread Sreejit K
Respected Sirs/Madam, Good Morning As part of a project I'm using elasticnet package in R for sparse pca. I would be great help for me if you can advice me on how to select Optimum number of principal components and number of observation in elasticnet package (k, para ) in R. -- *Thanks &

Re: [R] package ‘Rccp’ is not available (for R version 3.3.2)

2016-12-09 Thread Daniel Nordlund
On 12/9/2016 3:20 PM, Julia Edeleva wrote: Dear R-Community, I am trying to install the "eyetrackingR"-package to analyse my eye-tracking data. When installing the package prompts me to install the Rccp. However, when trying to do so, I am getting the error message package ‘Rccp’ is not

Re: [R] package ‘Rccp’ is not available (for R version 3.3.2)

2016-12-09 Thread Jeff Newmiller
A) it is Rcpp, not Rccp B) try another CRAN mirror if the automatic dependency handling did not work -- Sent from my phone. Please excuse my brevity. On December 9, 2016 3:20:33 PM PST, Julia Edeleva wrote: >Dear R-Community, > >I am trying to install the

[R] package ‘Rccp’ is not available (for R version 3.3.2)

2016-12-09 Thread Julia Edeleva
Dear R-Community, I am trying to install the "eyetrackingR"-package to analyse my eye-tracking data. When installing the package prompts me to install the Rccp. However, when trying to do so, I am getting the error message package ‘Rccp’ is not available (for R version 3.3.2) Which version of

[R] [R-pkgs] New R package on CRAN: productivity (0.1.0)

2016-12-07 Thread Yann Desjeux
Dear R users, I am happy to announce that the R package 'productivity: Indices of Productivity Using Data Envelopment Analysis' is now available on CRAN (https://cran.r-project.org/package=productivity). Productivity allows computing various transitive measures of productivity

Re: [R] R-package (“SeCuredSurv”)

2016-09-27 Thread Thierry Onkelinx
m it may concern > > I am MS student of Biostatistics. One of my thesis references is the > article" High-Dimensional Variable Selection for Multivariate and > Survival Data with Applications to Brain Imaging and Genetic Association > Studies. "And in the article it ment

Re: [R] R-package (“SeCuredSurv”)

2016-09-27 Thread Sarah Goslee
nd Genetic Association > Studies. "And in the article it mentions that they use the R-package > ("SeCuredSurv") but I didn't have found it in your site yet. I will be > really thankful if you could help me to find it. > > Thanks and regards > [[alternative HTML versi

[R] R-package (“SeCuredSurv”)

2016-09-27 Thread stud1830153714
To whom it may concern I am MS student of Biostatistics. One of my thesis references is the article" High-Dimensional Variable Selection for Multivariate and Survival Data with Applications to Brain Imaging and Genetic Association Studies. "And in the article it mentions that they

Re: [ESS] turning off ess-r-package-mode

2016-08-25 Thread Vitalie Spinu
>> On Wed, Aug 24 2016 15:49, Tyler Smith wrote: > The `ess-r-package-auto-activate` toggle isn't working for me. From > `emacs -Q`, I'm setting up with this script: > (require 'package) > (setq package-load-list > '((ess t) > (julia-mode t)) > (package-i

Re: [ESS] turning off ess-r-package-mode

2016-08-24 Thread Tyler Smith
The `ess-r-package-auto-activate` toggle isn't working for me. From `emacs -Q`, I'm setting up with this script: (require 'package) (setq package-load-list '((ess t) (julia-mode t)) (package-initialize) (require 'ess-site) (setq ess-r-package-auto-activate nil) And I'm still getting

[ESS] turning off ess-r-package-mode

2016-08-24 Thread Tyler Smith
use `devtools::load_all()`, as there are bugs I need to address before this is possible. I have tried calling `M-x ess-r-package-mode` in both the source file and the R process buffer, watching to see that the mode is *disabled* in both locations. Even after I do this, the modeline in my R source buf

Re: [R] R Package installation

2016-08-12 Thread Divakar Reddy
parallel is R's base package and it's already installed with base R. check in below location: /usr/lib64/R/library/ Thanks, Divakar On Fri, Aug 12, 2016 at 3:53 AM, Dayalan, Nithya wrote: > Hi Team, > > We are receiving the below message while updating the package.

Re: [R] R Package installation

2016-08-12 Thread Jeff Newmiller
This may not have anything to do with the OP's problem, but if permissions are an issue then it should be mentioned. One problem that some windows users encounter is thinking they should "Run As" administrator when installing or running R, rather than letting Windows UAE prompt them for

Re: [R] R Package installation

2016-08-12 Thread John Dougherty
On Fri, 12 Aug 2016 06:53:03 -0400 "Dayalan, Nithya" wrote: You don't say what OS you are using, though the packages you were trying to obtain are apparently for Windows. You also don't say whether you are using something like R-Studio, or whether you are on a company

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
; E-mail: nithya.daya...@merck.com > Tel#+91 44 61053951| Mobile +91 8754232975 > > > -Original Message- > From: Dayalan, Nithya > Sent: Friday, August 12, 2016 10:45 AM > To: 'Jeff Newmiller'; 'r-help@R-project.org' > Cc: Radhakrishan, Balaji > Subject: RE:

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
amp; Regards, > Nithya Dayalan > AMS MRL DPS | HCL @ Merck > E-mail: nithya.daya...@merck.com > Tel#+91 44 61053951| Mobile +91 8754232975 > > > -Original Message- > From: Dayalan, Nithya > Sent: Friday, August 12, 2016 10:45 AM > To: 'Jeff Newmiller'; '

Re: [R] R Package installation

2016-08-12 Thread Dayalan, Nithya
y, August 12, 2016 10:51 AM To: Dayalan, Nithya Cc: r-help@R-project.org; Radhakrishan, Balaji Subject: Re: [R] R Package installation > On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya <nithya.daya...@merck.com> wrote: > > Hi Team, > > We are receiving the below

Re: [R] R Package installation

2016-08-12 Thread Dayalan, Nithya
ller'; 'r-help@R-project.org' Cc: Radhakrishan, Balaji Subject: RE: [R] R Package installation Yes Jeff, I tried it with 10 mirrors. Thanks & Regards, Nithya Dayalan AMS MRL DPS | HCL @ Merck E-mail: nithya.daya...@merck.com<mailto:nithya.daya...@merck.com> Tel#+91 44 61053951| Mobile

Re: [R] R Package installation

2016-08-12 Thread Dayalan, Nithya
3 AM To: Dayalan, Nithya; 'r-help@R-project.org' Cc: Radhakrishan, Balaji Subject: Re: [R] R Package installation Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" <nithya.daya...@merck.com> wr

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
Tel#+91 44 61053951| Mobile +91 8754232975 > > > -Original Message- > From: David Winsemius [mailto:dwinsem...@comcast.net] > Sent: Friday, August 12, 2016 10:51 AM > To: Dayalan, Nithya > Cc: r-help@R-project.org; Radhakrishan, Balaji > Subject: Re: [R] R Package ins

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya wrote: > > Hi Team, > > We are receiving the below message while updating the package. Please help. > >> install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") > Warning: unable to access index for

Re: [R] R Package installation

2016-08-12 Thread Jeff Newmiller
Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" wrote: >Hi Team, > >We are receiving the below message while updating the package. Please >help. > >> install.packages("parallel",

[R] R Package installation

2016-08-12 Thread Dayalan, Nithya
Hi Team, We are receiving the below message while updating the package. Please help. > install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") Warning: unable to access index for repository https://cran.fhcrc.org/src/contrib: cannot open URL

Re: [R] Forking and adapting an R package

2016-07-14 Thread Jeff Newmiller
Writing R Extensions document and/or your the documentation for your development environment (RStudio). 3) Reading the Posting Guide would have informed the OP that there is an R-package-dev mailing list where this topic might be better raised now (though it used to belong in R-help). -- Sent fro

Re: [R] Forking and adapting an R package

2016-07-14 Thread BONACHE Adrien via R-help
let 2016 8h40 Objet : Re: [R] Forking and adapting an R package On Jul 13, 2016 15:02, Adams, Jean wrote: > > Timo, > > A couple of thoughts ... > > First, could you achieve what you want by simply modifying (your own copies > of) a function or two from the hexbin package,

Re: [R] Forking and adapting an R package

2016-07-14 Thread timo
esave-data --no-manual >> >> * checking for file ‘/home/tgrossen/R/hexbin/DESCRIPTION’ ... OK >> * preparing ‘hexbin’: >> * checking DESCRIPTION meta-information ... OK >> * cleaning src >> * installing the package to build vignettes >> * creating vignettes ... ERRO

Re: [R] Forking and adapting an R package

2016-07-13 Thread Adams, Jean
Error: processing vignette 'hexagon_binning.Rnw' failed with diagnostics: > chunk 1 (label = comphexsq) > Error in eval(expr, envir, enclos) : could not find function “hexbin” > Execution halted > Error: Command failed (1) > > As you can see, I am very much lost. I googled for "

[R] Forking and adapting an R package

2016-07-12 Thread timo
ERROR Error: processing vignette 'hexagon_binning.Rnw' failed with diagnostics: chunk 1 (label = comphexsq) Error in eval(expr, envir, enclos) : could not find function “hexbin” Execution halted Error: Command failed (1) As you can see, I am very much lost. I googled for "adapt R package and d

[R] package flexmix: models for ordinal data?

2016-07-11 Thread Xin Shelia
Hi Klaus, I saw you post “package flexmix: models for ordinal data?” on grokbase. I was wondering did you find the answer? Or what package did you use at the end? I really appreciate if you would like to help me. Best, Xin __ R-help@r-project.org

[R] R package updating

2016-06-24 Thread deva d
hi all, i notice that the R package available at CRAN is a more recent one compared to what I have. but i failed to update my machine and unfortunately, R does not work any more. can someone kindly suggest what is a way to update the R ver. is there a good way to retain all R files and update

Re: [R] Writing R package that call Fortran codes

2016-06-16 Thread Kodalore Vijayan, Vineetha W
>>>>> Example: fortran sources -> rk4_mod_r.f90 ,derive_henonheilles.f90, >>>>> poincare_section.f90 >>>>> >>>>> a) I use R CMD SHLIB rk4_mod_r.f90 ,derive_henonheilles.f90, >>>>> poincare_section.

Re: [R] Writing R package that call Fortran codes

2016-06-16 Thread Kodalore Vijayan, Vineetha W
Ave., L-627 > Livermore, CA 94550 > 925-423-1062 > > > > > > On 6/15/16, 1:20 PM, "R-help on behalf of Kodalore Vijayan, Vineetha W" > <r-help-boun...@r-project.org on behalf of vwk...@mun.ca> wrote: > > >Hi, > > > >I'm trying to writ

Re: [R] Writing R package that call Fortran codes

2016-06-16 Thread Kodalore Vijayan, Vineetha W
Thanks for the suggestion Berend. I just tried with numeric(n) and its working for x and y. But my issue is different and its not resolved yet. -Vineetha On Thu, Jun 16, 2016 at 1:19 PM, Berend Hasselman wrote: > > > On 16 Jun 2016, at 21:04, Eduardo M. A. M.Mendes

Re: [R] Writing R package that call Fortran codes

2016-06-16 Thread Berend Hasselman
> On 16 Jun 2016, at 21:04, Eduardo M. A. M.Mendes wrote: > > >> On Jun 16, 2016, at 3:50 PM, Berend Hasselman wrote: >> >> >>> On 16 Jun 2016, at 20:02, Eduardo M. A. M.Mendes >>> wrote: >>> >>> Thanks Bill for pointing this

Re: [R] Writing R package that call Fortran codes

2016-06-16 Thread Eduardo M. A. M.Mendes
> On Jun 16, 2016, at 3:50 PM, Berend Hasselman wrote: > > >> On 16 Jun 2016, at 20:02, Eduardo M. A. M.Mendes >> wrote: >> >> Thanks Bill for pointing this out. I haven’t noticed it. >> >> Vineetha, try as.double(rep(0,n)) or as.matrix(rep(0,n)), >>

Re: [R] Writing R package that call Fortran codes

2016-06-16 Thread Berend Hasselman
> On 16 Jun 2016, at 20:02, Eduardo M. A. M.Mendes wrote: > > Thanks Bill for pointing this out. I haven’t noticed it. > > Vineetha, try as.double(rep(0,n)) or as.matrix(rep(0,n)), > Why not simply numeric(n)? Berend Hasselman

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