Re: [R] plot.hclust point to older version

2014-11-27 Thread PIKAL Petr
Hm -Original Message- From: Jeff Newmiller [mailto:jdnew...@dcn.davis.ca.us] Sent: Wednesday, November 26, 2014 8:09 PM To: PIKAL Petr; Martin Maechler Cc: R help Subject: Re: [R] plot.hclust point to older version Short answer to your question is R files and original data from

Re: [R] plot.hclust point to older version

2014-11-27 Thread Martin Maechler
Subject: Re: [R] plot.hclust point to older version Short answer to your question is R files and original data from external sources. I tend to keep my projects in separate directories. I make a core R PP I do the same. file that I can run from beginning to end

Re: [R] plot.hclust point to older version

2014-11-26 Thread Martin Maechler
Thanks! That worked Of course: As in about 99.99% of all cases where Bill Dunlap helps. You probably have a local copy of an old version of plot.hclust or plot.dendrogram in your global environmenet or another package that masks the one in package:stats. E.g., I fired up R-2.14.2 and

Re: [R] plot.hclust point to older version

2014-11-26 Thread Pascal Oettli
into their ~/.emacs {and I'd like to see a way to do this easily with RStudio...} In RStudio: Tools - Global Options - General - uncheck Restore .RData into workspace at startup and choose Never for Save workspace to .RData on exit -- Pascal Oettli Project Scientist JAMSTEC Yokohama, Japan

Re: [R] plot.hclust point to older version

2014-11-26 Thread PIKAL Petr
To: Michael Mason Cc: R help Subject: Re: [R] plot.hclust point to older version Thanks! That worked Of course: As in about 99.99% of all cases where Bill Dunlap helps. You probably have a local copy of an old version of plot.hclust or plot.dendrogram in your global environmenet or another

Re: [R] plot.hclust point to older version

2014-11-26 Thread William Dunlap
How disruptive would it be if R were changed so the startup line [Previously saved workspace restored] were changed to show the complete name, from normalizePath(), of the saved workspace file? E.g., [Previously saved workspace restored from 'C:\Program Files\R\.RData'] (It is bad enough

Re: [R] plot.hclust point to older version

2014-11-26 Thread Jeff Newmiller
To: Michael Mason Cc: R help Subject: Re: [R] plot.hclust point to older version Thanks! That worked Of course: As in about 99.99% of all cases where Bill Dunlap helps. You probably have a local copy of an old version of plot.hclust or plot.dendrogram in your global environmenet

Re: [R] plot.hclust point to older version

2014-11-26 Thread David Winsemius
On Nov 26, 2014, at 9:49 AM, William Dunlap wrote: How disruptive would it be if R were changed so the startup line [Previously saved workspace restored] were changed to show the complete name, from normalizePath(), of the saved workspace file? E.g., [Previously saved workspace

[R] plot.hclust point to older version

2014-11-25 Thread Michael Mason
Hello fellow R users, I have recently updated to R 3.1.2. When trying to plot an hclust object to generate the dendrogram I get the following error: Error in .Internal(dend.window(n, merge, height2, hang, labels, ...)) : there is no .Internal function 'dend.window' I am indeed using R3.1.2

Re: [R] plot.hclust point to older version

2014-11-25 Thread Rolf Turner
Reproducible example??? (I know from noddink about hclust, but I tried the example from the help page and it plotted without any problem.) cheers, Rolf Turner On 26/11/14 06:13, Michael Mason wrote: Hello fellow R users, I have recently updated to R 3.1.2. When trying to plot an hclust

Re: [R] plot.hclust point to older version

2014-11-25 Thread Rolf Turner
On 26/11/14 08:53, Michael Mason wrote: Here you are. I expect most folks won't get the error. N = 100; M = 1000 mat = matrix(1:(N*M) + rnorm(N*M,0,.5),N,M) h = hclust(as.dist(1-cor(mat))) plot(h) Error in .Internal(dend.window(n, merge, height2, hang, labels, ...)) : there is no

Re: [R] plot.hclust point to older version

2014-11-25 Thread William Dunlap
You probably have a local copy of an old version of plot.hclust or plot.dendrogram in your global environmenet or another package that masks the one in package:stats. E.g., I fired up R-2.14.2 and copied those 2 plot methods to .GlobalEnv and then saved by workspace when quitting R. I then fired

Re: [R] plot.hclust point to older version

2014-11-25 Thread Michael Mason
-project.orgmailto:R-help@r-project.org Subject: Re: [R] plot.hclust point to older version You probably have a local copy of an old version of plot.hclust or plot.dendrogram in your global environmenet or another package that masks the one in package:stats. E.g., I fired up R-2.14.2 and copied