[R] About vargha effect size

2019-10-21 Thread javed khan
I have two samples A and B in excel and I want to use the vargha and delaney effect size in R. VD.A (A, B) gives me the result as. 0.170 (large) My question is how it can be large with this value because the large value in vargha effect size begins with 0.7 and above. [[alternative HTML

Re: [R] [EXTERNAL] Re: "chi-square" | "chi-squared" | "chi squared" | "chi square" ?

2019-10-21 Thread Richard O'Keefe
Pearson's original paper uses both \chi and \chi^2 frequently but never spells out how to pronounce the latter. Try another question: when talking about \sigma^2 do you say "sigma-square" (which sounds rather odd) or "sigma-squared" (which sounds more natural)? If you say sigma-square, say

[R] .libPaths() can not deal non-latin characters?

2019-10-21 Thread Jinsong Zhao
Hi there, I have a computer run Win10 with user names in Chinese. I installed R on it. It can run normally. When I installed a package, for example, ada, then the library would be installed into "C:/Users/中文/Documents/R/win-library/3.6", where "中文" is my user name. > library(ada) Error in

Re: [R] Heatmap

2019-10-21 Thread Rui Barradas
Hello, Just do col = rev(heat.colors(256)) ? Hope this helps, Rui Barradas Às 12:55 de 21/10/19, Eleftheria Dalmaris escreveu: Hello all, I have made the attached heat map without a problem. On this heat map, the yellows are my high values and the oranges are my low values. Is there a way

Re: [R] add error bars to rarecurve from package vegan

2019-10-21 Thread Eric Berger
You might improve your chances for getting a response by supplying a minimal reproducible example. Remember to include all the library() commands showing which packages you are using. On Mon, Oct 21, 2019 at 2:53 PM Luigi Marongiu wrote: > Hello, > I am using the package vegan to generate

[R] Heatmap

2019-10-21 Thread Eleftheria Dalmaris
Hello all, I have made the attached heat map without a problem. On this heat map, the yellows are my high values and the oranges are my low values. Is there a way to change that? Where the orange color is to have the yellow and vice versa? Thanks a lot, Eleftheria P.S. In case is needed here

[R] add error bars to rarecurve from package vegan

2019-10-21 Thread Luigi Marongiu
Hello, I am using the package vegan to generate rarefaction curves with the function rarecurve. Is it possible to add error bars to the plot? I tried to add se = FALSE but it did not work. Also, would it be possible to remove the box around the label of the data? Thank you -- Best regards, Luigi

Re: [R] add error bars to rarecurve from package vegan

2019-10-21 Thread Luigi Marongiu
sorry there was a typo: it is `se = TRUE` but the result is the same: SE is not a rarecurve's parameter. On Mon, Oct 21, 2019 at 4:41 PM Luigi Marongiu wrote: > > I did not put an example because it is a question of the basic syntax > of this function, not about the data at hand. However, here

Re: [R] .libPaths() can not deal non-latin characters?

2019-10-21 Thread Henrik Bengtsson
The folder must exist. If not, .libPaths() *silently* ignores it. Could that be it? Henrik On Mon, Oct 21, 2019, 02:32 Jinsong Zhao wrote: > Hi there, > > I have a computer run Win10 with user names in Chinese. I installed R on > it. It can run normally. When I installed a package, for

Re: [R] MLE packages

2019-10-21 Thread Bert Gunter
Are you familiar with R resources you can search? 1. CRAN task views: https://cran.r-project.org/web/views/ 2. For searching: https://rseek.org/ Searching on "maximum likelihood" there appeared to bring up relevant resources. 3. RStudio resources: https://education.rstudio.com/ Note: RStudio

Re: [R] [EXTERNAL] Re: "chi-square" | "chi-squared" | "chi squared" | "chi square" ?

2019-10-21 Thread Ivan Krylov
On Fri, 18 Oct 2019 15:25:59 -0700 "Dalthorp, Daniel via R-help" wrote: > I'd like to see the statistics on it before jumping to a conclusion > that the American preference is "chi-square" and the British > preference is "chi-squared". One way to get some data on this would be to count Scopus

[R] Simulations study not working entirely...

2019-10-21 Thread varin sacha via R-help
Dear R-Experts, Here below my reproducible example working but not entirely (working). What I understand is that there is a problem of libraries library(hbrfit) and ... ? How can I make it work entirely, many thanks for your precious help. SIMULATION STUDY 3 variables with 10% outliers

Re: [R] add error bars to rarecurve from package vegan

2019-10-21 Thread Luigi Marongiu
I did not put an example because it is a question of the basic syntax of this function, not about the data at hand. However, here is a working example: ``` library(vegan) data(dune) spAbund <- rowSums(dune) raremin <- min(rowSums(dune)) rarecurve(dune, col = "blue", es = TRUE) ``` Thank you On

[R] proxy with authentification

2019-10-21 Thread Stephane Kuhn
Hello, /We are using an explicit proxy with authentication for user internet access. It's not an option to create entire lists of always changing URLs of the entire R mirror network that would not require authentication./ /There seem to exist several methods for user authentication

[R] MLE packages

2019-10-21 Thread Mohan Ganesalingam
I'm fairly new to R. The language is amazing, but I'm having trouble navigating packages. I have a solution that handles the problems I'm working on, but I don't know if it could be solved more cleanly with mle, bbmle, maxLik, etc.. Here's an example problem first. I have run many WAV files

Re: [R] About vargha effect size

2019-10-21 Thread Rui Barradas
Hello, The question is not answerable. Please read the posting guide (link at the bottom of this e-mail). You need to post sample data and code that reproduces the result you're getting. Also, is the question about interpretation of a result? If so, as it seems to be, then this is not the

Re: [R] Simulations study not working entirely...

2019-10-21 Thread Wang Jiefei
What problem you have encountered? I still do not know your question. Please elaborate on your question and post the error message or something else that prevents you from running the code. Thanks, Jiefei On Mon, Oct 21, 2019 at 3:13 PM varin sacha wrote: > Dear Wang, > > Really appreciated

Re: [R] Simulations study not working entirely...

2019-10-21 Thread David Winsemius
On 10/21/19 9:40 AM, varin sacha via R-help wrote: Dear R-Experts, Here below my reproducible example working but not entirely (working). What I understand is that there is a problem of libraries library(hbrfit) and ... ? How can I make it work entirely, many thanks for your precious help.

Re: [R] Simulations study not working entirely...

2019-10-21 Thread varin sacha via R-help
Dear Wang, Really appreciated but I have tried dependencies=TRUE and it still does not work. Is it because my R version is 3.6.1 ? sessionInfo() at the end of the message install.packages( "robustbase",dependencies=TRUE ) install.packages( "MASS" ,dependencies=TRUE ) install.packages(

Re: [R] Simulations study not working entirely...

2019-10-21 Thread Wang Jiefei
Hi Varin, I did not look inside your code yet but I have a few suggestions. First I think your problem should be described in more detail, just saying you have a problem is not enough for us to diagnose. Second Your example depends on too many other packages and I'm not sure if you need all of

Re: [R] Simulations study not working entirely...

2019-10-21 Thread Wang Jiefei
Hi, After I install all dependencies your example seems fine ``` > MSE_fastMM [1] 2.629064e-05 > > MSE_Huber [1] 1.826184e-05 > > MSE_Tukey [1] 2.622499e-05 > > MSE_L1 [1] 1.044155e-05 > > MSE_fastTau [1] NaN > > MSE_HBR [1] 1.60821e-05 > > MSE_DCML [1] 9.519007e-06 > > sessionInfo() R version

[R] prop.test CI depends on null hypothesis?

2019-10-21 Thread Aaron Rendahl
Why does prop.test use continuity correction "only if it does not exceed the difference between sample and null proportions in absolute value"? I'm referring here to the single group method, though I believe there is a similar issue with the two group method. What this means in practice is that

Re: [R] [EXTERNAL] Re: "chi-square" | "chi-squared" | "chi squared" | "chi square" ?

2019-10-21 Thread Dalthorp, Daniel via R-help
Interesting! Both UK and US show quite a bit more "square" than "squared" in your sample, with maybe an even stronger tendency for "square" in US than in UK. I like "squared" better because it fits better with standard English pronunciation of, say, \sigma^2 or x^2 or r^2. On Mon, Oct 21,

Re: [R] .libPaths() can not deal non-latin characters?

2019-10-21 Thread Jinsong Zhao
The folder is there. The problem is caused by Sys.glob() in .libPaths(). Sys.glob() will return character(0) when the path contains Chinese characters. Here is another demo: > dir.exists("c:/Users/zjs/Desktop/中文/R") [1] TRUE > Sys.glob("c:/Users/zjs/Desktop/中文/R") character(0) >

Re: [R] add error bars to rarecurve from package vegan

2019-10-21 Thread Duncan Mackay
Hi Luigi Using the help example for vegan:: rarefy It appears that the example for vegan:: rarefy does not work for SE=T in the plot command the x values (S) are a vector and yvalues Srare is a list It appears that the argument se = TRUE is not coded So that your commands cannot produce error

[R-es] SITREP

2019-10-21 Thread Jose Betancourt B.
Estimados ESTOY TRATANDO DE INSTALAR sitrep install.packages("remotes") remotes::install_github("R4EPI/sitrep" PERO AL DINAL ME INFORMA ESTO package ‘digest’ successfully unpacked and MD5 sums checked package ‘raster’ successfully unpacked and MD5 sums checked package ‘xfun’ successfully

Re: [R-es] SITREP

2019-10-21 Thread Emilio L. Cano
Hola, Por si te sirve: A mí me dio problemas una actualización de curl en Red Hat, y tuve que instalar una versión anterior. Saludos, Emilio > El 21 oct 2019, a las 21:28, Jose Betancourt B. > escribió: > > Estimados > > ESTOY TRATANDO DE INSTALAR sitrep > > install.packages("remotes") >

Re: [R-es] SITREP

2019-10-21 Thread neo
cannot remove prior installation of package ‘curl’ y si pruebas desinstalando CURL manualmente primero y luego intentas la instalación nuevamente, a ver q tal va ... ? Slds !! Eric. On 21-10-19 16:28, Jose Betancourt B. wrote: Estimados ESTOY TRATANDO DE INSTALAR sitrep