Re: [R] how to comment off sections

2010-07-17 Thread Joshua Wiley
I use XEmacs + ESS, and looking for ways to add text to a region of code, I see it is quite easy with C-x r t. Thanks for your great advice. On Fri, Jul 16, 2010 at 7:32 PM, Erik Iverson er...@ccbr.umn.edu wrote: On 07/16/2010 06:59 PM, Joshua Wiley wrote: Hello, Is there an way to easy

[R] How to generate PDF help file for our internal R package?

2010-07-17 Thread noclue_
Currently, we have developed an R package for our company's internal use (at least for now). I have successfully built the package and generated zip file which can be easily installed. However, I am not sure how to generate the big HELP file in PDF. Right now, I have about 30+ Rd files for

Re: [R] How to generate PDF help file for our internal R package?

2010-07-17 Thread Romain Francois
Le 17/07/10 08:23, noclue_ a écrit : Currently, we have developed an R package for our company's internal use (at least for now). I have successfully built the package and generated zip file which can be easily installed. However, I am not sure how to generate the big HELP file in PDF. Right

[R] R2HTML: how to include comments in html output

2010-07-17 Thread Vikas Rawal
Is there any way to include comments in the html output of R2HTML? Or is there any other function in any package that produces an html output including comments, commands and output of the commands. Vikas Rawal __ R-help@r-project.org mailing list

Re: [R] Access web content from within R

2010-07-17 Thread Bart Joosen
Thanks Henrique, that does the trick!!! Bart -- View this message in context: http://r.789695.n4.nabble.com/Access-web-content-from-within-R-tp2289953p2292181.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org

Re: [R] multivariate graphs, averaging on some vars

2010-07-17 Thread Dennis Murphy
Hi: On Fri, Jul 16, 2010 at 3:44 PM, skan juanp...@gmail.com wrote: Hello I have a table of this kind: functionx1 x2 x3 2.232 1 1 1.00 2.242 1 1 1.01 2.732 1 1 1.02 2.770 1 2 1.00

[R] sort file names in numerical order

2010-07-17 Thread Sebastian Gibb
Hello, I get some file names by list.files(). These names are in alphabetical order. I want to change it to logical numeric order. Example: fileNames - c(A10, A1, A2, B1, B2, B10) sort(fileNames) [1] A1 A10 A2 B1 B10 B2 I want to have: A1 A2 A10 B1 B2 B10 Is this possible? Kind regards,

Re: [R] SOLVED - export tables to excel files on multiple sheets with titles for each table

2010-07-17 Thread eugen pircalabelu
Hello R-users, I was able using RExcel and the VBA script offered by Eric Neuwirth (modifying it a little bit) to import dataframes on separate Excel sheets, each with its own particular title. As such the problem is solved. Thank you all for your suggestions. Have a nice day ahead! Eugen

Re: [R] how to comment off sections

2010-07-17 Thread Peter Dalgaard
Joshua Wiley wrote: I use XEmacs + ESS, and looking for ways to add text to a region of code, I see it is quite easy with C-x r t. Thanks for your great advice. or even M-x comment-region M-x uncomment-region These are commonly bound to C-c ; (because of LISP heritage), but not in (my

Re: [R] multivariate graphs, averaging on some vars

2010-07-17 Thread skan
Thank you very much, I'll try it. About my question on graphics with colour... Imagine I have a function y=y(x1, x2, x3), I'd need four dimensions to graph x1, x2, x3, and y. My idea is to use the typical 3D plot adding the information of the additional fourth variable 'y to the colour of the

[R] re. Mathematica and R

2010-07-17 Thread Alan Kelly
David - information on calling R from within Mathematica can be found at the following link: http://www.mofeel.net/1164-comp-soft-sys-math-mathematica/13022.aspx HTH, Alan Kelly __ R-help@r-project.org mailing list

[R] Adjustment for multiple-comparison for log-rank test

2010-07-17 Thread Marco Barbàra
DeaR experts, I was asked for a log-rank pairwise survival comparison. I've a straightforward way to do this using the SAS system: http://support.sas.com/documentation/cdl/en/statug/63033/HTML/default/viewer.htm#/documentation/cdl/en/statug/63033/HTML/default/statug_lifetest_sect019.htm What

Re: [R] sort file names in numerical order

2010-07-17 Thread John Kane
library(gtools) ?mixedorder --- On Sat, 7/17/10, Sebastian Gibb li...@sebastiangibb.de wrote: From: Sebastian Gibb li...@sebastiangibb.de Subject: [R] sort file names in numerical order To: r-help@r-project.org Received: Saturday, July 17, 2010, 4:31 AM Hello, I get some file names by

Re: [R] sort file names in numerical order

2010-07-17 Thread Gabor Grothendieck
On Sat, Jul 17, 2010 at 4:31 AM, Sebastian Gibb li...@sebastiangibb.de wrote: Hello, I get some file names by list.files(). These names are in alphabetical order. I want to change it to logical numeric order. Example: fileNames - c(A10, A1, A2, B1, B2, B10) sort(fileNames) [1] A1  A10 A2  

[R] ed50

2010-07-17 Thread Dipa Hari
Dr. Ruben Rao Thanks for your reply .But I don't know that how should I reparameterise the model.can you reply me in detail for reparameterization and taylor series for delta method . Thanks   --- On Tue, 7/13/10, Rubén Roa r...@azti.es wrote: From: Rubén Roa r...@azti.es Subject: RE: [R]

Re: [R] installing and loading packages

2010-07-17 Thread chakri_amateur
In my Windows XP, I just have to load package every time I open R, but not Install !! There must be some problem during installation ! Chakri -- View this message in context: http://r.789695.n4.nabble.com/installing-and-loading-packages-tp887190p2292339.html Sent from the R help mailing list

Re: [R] installing and loading packages

2010-07-17 Thread Jeff Newmiller
I don't think theremost. It is normal to have to call the library function for each package you need devices to during an R session. chakri_amateur chakri2...@yahoo.co.in wrote: In my Windows XP, I just have to load package every time I open R, but not Install !! There must be some problem

Re: [R] installing and loading packages

2010-07-17 Thread Roman Luštrik
What are your user permission on the PC where you're working? -- View this message in context: http://r.789695.n4.nabble.com/installing-and-loading-packages-tp887190p2292385.html Sent from the R help mailing list archive at Nabble.com. __

Re: [R] sort file names in numerical order

2010-07-17 Thread Sebastian Gibb
thanks a lot, it works. you wrote: library(gtools) ?mixedorder --- On Sat, 7/17/10, Sebastian Gibb li...@sebastiangibb.de wrote: From: Sebastian Gibb li...@sebastiangibb.de Subject: [R] sort file names in numerical order To: r-help@r-project.org Received: Saturday, July 17, 2010,

[R] Plot error

2010-07-17 Thread James Platt
Hi guys, I am a newbie to R, so apologies in advance. I created this simple table in excel, saved in tab delimited .txt: name value_1 value_2 1 bill 14 2 ben 2 2 3 jane 3 1 test -read.table(\path\to\file, sep=\t, header=TRUE) x -c(seq[value_1])

Re: [R] Plot error

2010-07-17 Thread Ista Zahn
Hi James, On Sat, Jul 17, 2010 at 2:50 PM, James Platt james-pl...@hotmail.co.uk wrote: Hi guys, I am a newbie to R, so apologies in advance. I created this simple table in excel, saved in tab delimited .txt: name value_1 value_2 1 bill       1            4 2 ben      2           2 3

Re: [R] Plot error

2010-07-17 Thread Joshua Wiley
Hi James, I believe the issue has to do with the values you assigned to 'x' and 'y'. You call the function c() on seq[value_1], but you assigned your data not to 'seq' but to 'test'. You need to use the variable name that you assigned your data to (as a side note seq() is a function, so you

Re: [R] how to comment off sections

2010-07-17 Thread Erik Iverson
On 07/17/2010 01:05 AM, Joshua Wiley wrote: I use XEmacs + ESS, and looking for ways to add text to a region of code, I see it is quite easy with C-x r t. Thanks for your great advice. I use GNU Emacs. With a region of code actve, M-; will add the comment line (or remove it if it's already

[R] Help with Reshaping from Wide to Long

2010-07-17 Thread jlwoodard
I am trying to reshape data that are in the wide format into the long format. The design is a repeated-measures design, which combined 3 levels of shape (circle, square, triangle) with 3 levels of color (Blue, Red, Green), for a total of 9 variables. The wide data look like this (sorry I

Re: [R] Plot error

2010-07-17 Thread James Platt
Hi both, Sorry my mistake I was trying to make a graph from another file I called seq, I decided to use test as an example, but mixed up the two. I have got this to work now thanks. after doing this: #Assign columns to variables 'x' and 'y' x - test[ , value_1] y - test[ , value_2] #plot

Re: [R] Plot error

2010-07-17 Thread James Platt
The other question I have: Is there any way to link the data point on the graph to the name of a row i.e in my table: name value_1 value_2 bill 14 ben 2 2 jane 3 1 I click on the data point at 2,2 and it would read out ben thanks again. James

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Tal Galili
Hi John, 1) Read the help for the reshape package. What you want is to use the melt function. 2) There are various ways of doing Repeated measures Anova in R, you might want to have a look at this: http://www.r-statistics.com/2010/04/repeated-measures-anova-with-r-tutorials/ (I especially like

Re: [R] Multinomial logistic regression in complex surveys

2010-07-17 Thread Joshua Wiley
I would take a look at mlogit() in package mlogit or vglm() with family = multinomial in package VGAM. HTH, Josh 2010/7/16 Rosario Austral rosarioaust...@yahoo.com.ar: Dear R-list members, I´m using the package survey and I need to find a function for multinomial logistic regression in a

[R] Computing the power of a matrix efficiently and accurately

2010-07-17 Thread Miguel Lacerda
Good day, I would like to know if there is an efficient and accurate method for computing the power of a tridiagonal matrix in R? The obvious method would be eigen-decomposition, but I find that this is not very accurate, probably because the dimensions of the matrix I am considering are large

[R] Bug 14340 - Symbols() plots with wrongly scaled y-axis

2010-07-17 Thread nancynyk
Hello, I submitted this bug report to r-core and got a rejection saying I should post to r-help. This is my first time ever submitting a bug report, so forgive me if I'm using some wrong format. So, here's my bug report: Component: Graphics OS: Mac OS 10.5.8, X11 XQuartz 2.5.0 Summary: In

Re: [R] Send code to R from WinEdt55

2010-07-17 Thread Uwe Ligges
On 15.07.2010 16:42, YANG, Richard ChunHSi wrote: R Gurus: This sounds not a FAQ. I upgraded WinEdt from 5.4 to 5.5 , following load RWinEdt, R-WinEdt editor appears. There are more menu items and task icons in this version, but I failed to find a pull down menu or task icon to send

Re: [R] RWinEdt and WinEdt 6.0

2010-07-17 Thread Uwe Ligges
On 15.07.2010 16:45, Christopher Desjardins wrote: Hi, I am curious if the status of RWinEdt and WinEdt 6.0 has changed since this thread http://r.789695.n4.nabble.com/RWinEdt-in-WinEdt-6-td2174285.html Unfortunately not due to lack of time. But planned for the summer. Uwe Thanks for

Re: [R] Bug 14340 - Symbols() plots with wrongly scaled y-axis

2010-07-17 Thread baptiste auguie
Hi, try adding asp=1 in symbols() to set the aspect ratio of the plotting region to 1. HTH, baptiste On 17 July 2010 18:21, nancy...@gmail.com wrote: Hello, I submitted this bug report to r-core and got a rejection saying I should post to r-help. This is my first time ever submitting a

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread jlwoodard
Tal, Thanks for the information. I actually did read through the help for the reshape package, though being relatively new to R, I don't quite understand the ins and outs of the command. I tried using the melt command: x-melt(accuracy,id='Subject') but, it didn't give me anything different

Re: [R] Identify points (was Plot error)

2010-07-17 Thread Peter Ehlers
On 2010-07-17 9:50, James Platt wrote: The other question I have: Is there any way to link the data point on the graph to the name of a row i.e in my table: name value_1 value_2 bill 14 ben 2 2 jane 3 1 I click on the data point at 2,2 and it

Re: [R] multivariate graphs, averaging on some vars

2010-07-17 Thread Uwe Ligges
On 17.07.2010 12:39, skan wrote: Thank you very much, I'll try it. About my question on graphics with colour... Imagine I have a function y=y(x1, x2, x3), I'd need four dimensions to graph x1, x2, x3, and y. My idea is to use the typical 3D plot adding the information of the additional

Re: [R] save plot

2010-07-17 Thread Gavin Simpson
On Fri, 2010-07-16 at 11:17 -0400, linda.s wrote: I made a plot, but after I made a second plot, the previous plot was gone. How can I save all the plots in a file (I do not manually copy and paste them one by one)? Thanks. Linda [I presume you addressed this to Duncan Murdoch for a good

Re: [R] cca in vegan (formula instead of community matrix data)

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 12:44 +0800, elaine kuo wrote: Dear List, I tried to do cca based on species data and environmental variables (formula instead of community data). However, there was an error saying row sums must be 0. I searched the previous related messages but found few solutions.

Re: [R] data.frame required for cca in ade4

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 13:15 +0800, elaine kuo wrote: Dear List, I tried to conduct cca using csv data but failed. The message said that data.frame is required. Please kindly share how to convert a csv-imported file to a data.frame. Thank you. It was a dataframe. You aren't giving

Re: [R] cca in ade4

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 13:31 +0800, elaine kuo wrote: Dear List, I used spec and envi for cca in ade4. (both are data.frame) However, there is a message telling that error in if (nf rank) nf - rank R missing value in TRUE/FALSE Please kindly help how to modify the code below. Thank

[R] Help with a problem

2010-07-17 Thread Michael Hess
Hello R users, I am a researcher at the University of Michigan looking for a solution to an R problem. I have loaded my data in from a mysql database and it looks like this data ds c1 c2 1 2010-04-03100 0 2 2010-04-30 11141 15 3 2010-05-01 3

Re: [R] plot month and year

2010-07-17 Thread linda.s
i am a beginner and tried to provide a reproducible example. is the following style a correct one? Thanks. dput(unem) structure(list(a = c(10.2, 9.8, 9.5, 8.3, 7.9, 8.8, 8.9, 9.3, + 9.2, 9, 9.5, 12, 15.7, 16.1, 15.4, 14.7, 13.9, 15.3, 15.4, 15, + 13.8, 13.9, 14.1, 15.8), b = c(7, 6.7, 6.8, 6.1,

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Tal Galili
Hi John, Try posting a sample of your data in reply to this e-mail by using: dput(head(accuracy)) And me (or someone else) will be sure to fix your command. Regarding the ANOVA, read more :) Tal Contact Details:--- Contact

Re: [R] save plot

2010-07-17 Thread linda.s
Open a new device before plotting, do your plotting, close the device. For example, using a PDF device via pdf(): pdf(my_plots.pdf, height = 8, width = 8, pointsize = 10,    version = 1.4, onefile = TRUE) for(i in 1:10) {    y - rnorm(100)    x - rnorm(100)    plot(y ~ x) } dev.off()

Re: [R] save plot

2010-07-17 Thread Uwe Ligges
On 17.07.2010 20:52, linda.s wrote: Open a new device before plotting, do your plotting, close the device. For example, using a PDF device via pdf(): pdf(my_plots.pdf, height = 8, width = 8, pointsize = 10, version = 1.4, onefile = TRUE) for(i in 1:10) { y- rnorm(100) x-

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread John L. Woodard
Hi Tal, Here is the output as you requested: structure(list(Subject = c(101L, 102L, 103L, 104L, 105L, 106L ), CircleBlue = c(95L, 80L, 80L, 85L, 70L, 70L), CircleRed = c(100L, 90L, 70L, 80L, 75L, 75L), CircleGreen = c(100L, 100L, 95L, 100L, 95L, 75L), SquareBlue = c(95L, 85L, 90L, 90L, 70L,

Re: [R] Regarding accesing R- Repositories at servers

2010-07-17 Thread Uwe Ligges
On 13.07.2010 09:42, venkatesh bandaru wrote: Dear R-help team , I am venkatesh, student of University of Hyderabad, India. I couldn't able to access R-repositories at Your specified servers.It is giving error such as Couldn't able to access media. It would be helpful to see what you

[R] Error installing tkrplot

2010-07-17 Thread Jay-pea
Hi, I've been trying to install tkrplot and have been coming across this error. Loading required package: tcltk Loading Tcl/Tk interface ... Error : .onLoad failed in loadNamespace() for 'tcltk', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared library

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Jeff Newmiller
Try this: library(reshape) accuracy - structure(list(Subject = c(101L, 102L, 103L, 104L, 105L, 106L ), CircleBlue = c(95L, 80L, 80L, 85L, 70L, 70L), CircleRed = c(100L, 90L, 70L, 80L, 75L, 75L), CircleGreen = c(100L, 100L, 95L, 100L, 95L, 75L), SquareBlue = c(95L, 85L, 90L, 90L, 70L, 40L),

Re: [R] Help with a problem

2010-07-17 Thread RICHARD M. HEIBERGER
Michael, This will get you started. What you are doing with the seven rows isn't clear from your description. I made the dates into Date objects. I called your data mydata as data is potentially ambiguous. Rich mydata - read.table(header=TRUE, textConnection( ds c1 c2 1

[R] slplot issue

2010-07-17 Thread Shawn Way
In a prior life I was able to use slplot can change the xlim and ylim such that the ellipse was a perfect circle. It seems that the xlim and ylim are no longer supported by the slplot function. Any thoughts on how I can change this? Thank you kindly,

Re: [R] sort file names in numerical order

2010-07-17 Thread Michael Hannon
I get some file names by list.files(). These names are in alphabetical order. I want to change it to logical numeric order. Example: fileNames - c(A10, A1, A2, B1, B2, B10) sort(fileNames) [1] A1 A10 A2 B1 B10 B2 I want to have: A1 A2 A10 B1 B2 B10 Is this possible?

Re: [R] Help with a problem

2010-07-17 Thread Stephan Kolassa
Mike, I am slightly unclear on what you want to do. Do you want to check rows 1 and 7 or 1 *to* 7? Should c1 be at least 100 for *any one* or *all* rows you are looking at, and same for c2? You can sort your data like this: data - data[order(data$ds),] Type ?order for help. But also do this

Re: [R] how to collapse categories or re-categorize variables?

2010-07-17 Thread Peter Dalgaard
Ista Zahn wrote: Hi, On Fri, Jul 16, 2010 at 5:18 PM, CC turtysm...@gmail.com wrote: I am sure this is a very basic question: I have 600,000 categorical variables in a data.frame - each of which is classified as 0, 1, or 2 What I would like to do is collapse 1 and 2 and leave 0 by itself,

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Phil Spector
An alternative using the base reshape function: one = reshape(accuracy,idvar='Subject',varying=list(c(2,3,4),c(5,6,7),c(8,9,10)), direction='long',timevar='shape') two = reshape(one,idvar=c('Subject','shape'),varying=list(3:5), direction='long',timevar='color')

Re: [R] how to collapse categories or re-categorize variables?

2010-07-17 Thread Phil Spector
Please look at Peter Dalgaard's response a little more carefully. There's a big difference between the levels= argument (which must be unique) and the labels= argument (which need not be). Here are two ways to do what you want: d = 0:2 factor(d,levels=0:2,labels=c('0','1','1')) [1] 0 1 1

Re: [R] Help with a problem

2010-07-17 Thread Michael Hess
Sorry for not being clear. In the dataset there are around 100 or so days of data (in the case also rows of data) I need to make sure that the person meets that c1 is at least 100 AND c2 is at least 8 for 5 of 7 continuous days. I will play with what I have and see if I can find out how to do

Re: [R] plot month and year

2010-07-17 Thread Dennis Murphy
Hi: I'm a little more familiar with ggplot2 than zoo for graphing multivariate time series, so my response is based on that bias. On Sat, Jul 17, 2010 at 11:41 AM, linda.s samrobertsm...@gmail.com wrote: i am a beginner and tried to provide a reproducible example. is the following style a

Re: [R] plot month and year

2010-07-17 Thread Gabor Grothendieck
On Sat, Jul 17, 2010 at 2:41 PM, linda.s samrobertsm...@gmail.com wrote: The X axis on the plot now starts from 2008.0; Since the data starts from January 2008, can I make it 2008.1, and also show 2009.12 on the axis? See the example of a fancy X axis in this post:

Re: [R] save plot

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 14:52 -0400, linda.s wrote: Open a new device before plotting, do your plotting, close the device. For example, using a PDF device via pdf(): pdf(my_plots.pdf, height = 8, width = 8, pointsize = 10, version = 1.4, onefile = TRUE) for(i in 1:10) { y -

Re: [R] slplot issue

2010-07-17 Thread Dennis Murphy
In which package would one find slplot? It's not in any of the 1800+ packages on my system... Dennis On Sat, Jul 17, 2010 at 1:28 PM, Shawn Way s...@meco.com wrote: In a prior life I was able to use slplot can change the xlim and ylim such that the ellipse was a perfect circle. It seems that

Re: [R] how to collapse categories or re-categorize variables?

2010-07-17 Thread Ista Zahn
On Sat, Jul 17, 2010 at 9:03 PM, Peter Dalgaard pda...@gmail.com wrote: Ista Zahn wrote: Hi, On Fri, Jul 16, 2010 at 5:18 PM, CC turtysm...@gmail.com wrote: I am sure this is a very basic question: I have 600,000 categorical variables in a data.frame - each of which is classified as 0, 1,

Re: [R] Help with a problem

2010-07-17 Thread Joshua Wiley
Hi Michael, The days in your example do not look continuous (at least from my thinking), so you may have extra requirements in mind, but take a look at this code. My general thought was first to turn each column into a logical vector (c1 = 100 and c2 = 8). Taking advantage of the fact that R

[R] loop troubles

2010-07-17 Thread Joe P King
Hi all, I appreciate the help this list has given me before. I have a question which has been perplexing me. I have been working on doing a Bayesian calculating inserting studies sequentially after using a non-informative prior to get a meta-analysis type result. I created a function using three

[R] Namibia becoming NA

2010-07-17 Thread Suresh Singh
I have a data file in which one of the columns is country code and NA is the code for Namibia. When I read the data file using read.csv, NA for Namibia is being treated as null or NA How can I prevent this from happening? I tried the following but it didn't work input -