Hi all,
First, I carried out GO enrichment to predicted/validated target genes of those
miRNA using GOstats package. Then I find myself in a dead end. So what is the
good practice? Is it possible to directly do GO enrichment to miRNAs? Are they
included in GO database?
Regards,
Allen
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R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained,
Dear expeRts,
I am now reading a book which teaching how to make a r package, i
investigated from ?options but nothing said about in making a package. The help
document only just introduce some option keys to me in some basic r packages.
But i want to know, why need to set some options
Hello ,
I have a function handler using gWidgets like below ,, i had
declared a function inside this function . But dont have the
idea how to call the function outside the handler function.
addHandlerClicked(AAS,handler=function(h,...)
{
ga()
I'm no expert on hurdle models, but it seems that you are unaware that the
negative binomial and the truncated negative binomial are quite different
things.
-pd
On 29 Aug 2014, at 05:57 , Nick Livingston nlivings...@ymail.com wrote:
I have sought consultation online and in person, to no
On Fri, 29 Aug 2014, peter dalgaard wrote:
I'm no expert on hurdle models, but it seems that you are unaware that
the negative binomial and the truncated negative binomial are quite
different things.
Yes. You can replicate the truncated count part of the hurdle model with
the zerotrunc()
Dear subscribers,
I've found that if there is a variable in the dataframe with a name very
similar to a new variable, R does not give the correct values to this latter
variable based on the values of a third value:
M - structure(list(V1 = c(67, 62, 74, 61, 60, 55, 60, 59, 58)),.Names =
I’m very glad to see the Conjoint Package for R. The documentation for it does
not appear to specify methods for data acquisition. Are the cards to be
individually scored by each respondent (most clients would rather see a
choice-based methodology)?
SurveyGizmo, an excellent online survey host
Dear Support,
Please let us know Windows 2008R2 OS compatibility for R tool is available or
not?
If available, please let us know the details.
You are being bitten by the partial matching of the $ operator
(see ?$ for a better explanation). Here is solution that works:
**original**
N - structure(list(V1 = c(67, 62, 74, 61, 60, 55, 60, 59, 58), V2 = c(NA, 1,
1, 1, 1,1,1,1,NA)),
+ .Names = c(age,samplem),
On Fri, Aug 29, 2014 at 3:53 AM, Angel Rodriguez
angel.rodrig...@matiainstituto.net wrote:
Dear subscribers,
I've found that if there is a variable in the dataframe with a name very
similar to a new variable, R does not give the correct values to this latter
variable based on the values of
One clue is the help file for $...
? $
In particular there see the discussion of character indices and the exact
argument.
You can also find this discussed in the Introduction to R document that comes
with the software.
On 08/28/2014 11:47 PM, my1stbox wrote:
Hi all,
First, I carried out GO enrichment to predicted/validated target genes of those
miRNA using GOstats package. Then I find myself in a dead end. So what is the
good practice? Is it possible to directly do GO enrichment to miRNAs? Are they
included
1, Please post in plain text, not HTML, as requested by the posting guide.
2. R is not C, You define, not declare, functions, whose scope and
availability are then determined appropriately. Where is ga() defined?
3. Have you read an Introduction to R or other R tutorial? If not, do
so before
Yes I looked at this and I tried metaMDSdist but got an error and for some
reason I didn't try metaMDSredist which seems to be the right thing. So the
main thing I was confused about was what to call dist() on -i.e., getting
the correct ordinal distance, and then if I assume that the NMDS scores
That is bad, especially if it is password to your bank account. Maybe you shall
write it down somewhere next time.
Petr
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
project.org] On Behalf Of Ernesto Villarino
Sent: Friday, August 29, 2014 9:32 AM
Dear all,
The rsdmx package has been published in CRAN
http://cran.r-project.org/web/packages/rsdmx/index.html.
rsdmx allows to read SDMX (Statistical Data and Metadata EXchange) data
and metadata files, available in SDMX-ML format (XML).
For your information, its source code is managed at
Your password is sent via email every month or so.
--
David
On Aug 29, 2014, at 7:54 AM, PIKAL Petr wrote:
That is bad, especially if it is password to your bank account. Maybe you
shall write it down somewhere next time.
Petr
-Original Message-
From:
Hello,
For my master thesis I have fitted an individual tree diameter growth model
and a survival probability model separately using R, but I was told that
simultaneous estimation of these two models would minimize overall errors
and provide a variance-covariance matrix as a whole.
In that
On 29/08/2014 17:00, David Winsemius wrote:
Your password is sent via email every month or so.
And sending by email can be requested from
https://stat.ethz.ch/mailman/listinfo/r-help, at least if you know the
email address which you used to subscribe (otherwise look in the headers
of
See
http://cran.r-project.org/
On Aug 28, 2014, at 11:41 PM, Ravi Kumar Rupakula wrote:
Dear Support,
Please let us know Windows 2008R2 OS compatibility for R tool is available
or not?
If available, please let us know the details.
Hello!
Here is yet another question which I strongly suspect has a simple answer.
I build an RcmdrPlugin package and saved my workspace when I came out of R.
For some reason, it save the namespace of the plugin as an environment.
When I load the workspace back in, 2 environments appear,
On 29/08/2014 18:28, Mark Sharp wrote:
See
http://cran.r-project.org/
Specifically,
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Installation-and-Usage
mentions Windows 2008.
The posting guide (see the footer of this message) asks you to look at
the FAQs before posting.
On
Thank you for your responses.
Since my previous attempt to manually truncate my DV didn't work, I'm very
interested in trying again using the zerotrun() function. However, I attempted
to install countreg but received the following notification:
Warning in install.packages :
I’m very glad to see the Conjoint Package for R. The documentation for it does
not appear to specify methods for data acquisition. Are the cards to be
individually scored by each respondent (most clients would rather see a
choice-based methodology)?
SurveyGizmo, an excellent online survey host
On Aug 29, 2014, at 9:46 AM, Nick Livingston wrote:
Thank you for your responses.
Since my previous attempt to manually truncate my DV didn't work, I'm very
interested in trying again using the zerotrun() function. However, I
attempted to install countreg but received the following
On 29/08/2014 17:46, Nick Livingston wrote:
Thank you for your responses.
Since my previous attempt to manually truncate my DV didn't work, I'm very interested in
trying again using the zerotrun() function. However, I attempted to install
countreg but received the following notification:
On Wed, Aug 27, 2014 at 7:10 PM, Jeff Newmiller
jdnew...@dcn.davis.ca.us wrote:
Please stop posting on this plain text list using HTML. You are not a
freshman any more.
My sincere apologies, will do, accidentally left Gmail configured as such.
Is anyone really considering the use of a word
Dear list members,
My question concerns the use of system() in R version 3.1.1 patched and
MacosX 10.9.4.
I want capture the result of a system command without displaying error
message. I give exemple.
In terminal, if I do this command:
find $HOME -type f -name 'PuertoSanJose.csv'
I get the
As a start try to use system2() instead and look at its argument for how to
capture stdout and/or stderr. It's a neater function.
It may be that those messages cannot be captured easily, but hopefully they
are.
My $0.02
Henrik
On Aug 29, 2014 12:21 PM, Marc Girondot marc_...@yahoo.fr wrote:
Dear All,
I have used the lda() function in the MASS library to estimate a set of
discriminant functions to assign samples from a training set to one of six
groups. The cross validation generates nearly perfect predictions for samples
in the training set. Hooray!
Now I want to use
I am hoping someone can help me with a bus stop sequencing problem in R,
where I need to match counts of people getting on and off a bus to the
correct stop in the bus route stop sequence. I have tried looking
online/forums for sequence matching but seems to refer to numeric sequences
or DNA
On Fri, 29 Aug 2014 06:33:01 -0700 Jeff Newmiller jdnew...@dcn.davis.ca.us
wrote
One clue is the help file for $...
? $
In particular there see the discussion of character indices and the exact
argument.
...snip...
On August 29, 2014 1:53:47 AM PDT, Angel Rodriguez
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