Re: [R] RDA Triplot
Since I am doing an RDA with contraints I get this error message when trying to use biplot.rda: 'biplot.rda' not suitable for models with constraints Daniel 2010/11/26 Jari Oksanen [via R] ml-node+3060660-1324000642-57...@n4.nabble.comml-node%2b3060660-1324000642-57...@n4.nabble.com Danielwc daniel.carstensen at gmail.com writes: Im using the VEGAN package to do an RDA ordination. In my plot I get my environmental scores as arrows/vectors, but my species scores as points. I would like to get the species scores as arrows as well. Is there not a way I can tell R to plot both environmental and species scores as arrows/vectors? See ?biplot.rda in vegan. Cheers, Jari Oksanen __ [hidden email] http://user/SendEmail.jtp?type=nodenode=3060660i=0mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.htmlhttp://www.r-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- View message @ http://r.789695.n4.nabble.com/RDA-Triplot-tp3055474p3060660.html To unsubscribe from RDA Triplot, click herehttp://r.789695.n4.nabble.com/template/NamlServlet.jtp?macro=unsubscribe_by_codenode=3055474code=ZGFuaWVsLmNhcnN0ZW5zZW5AZ21haWwuY29tfDMwNTU0NzR8LTM3Mjc5OTMzMA==. -- View this message in context: http://r.789695.n4.nabble.com/RDA-Triplot-tp3055474p3063712.html Sent from the R help mailing list archive at Nabble.com. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] RDA Triplot
Hi Im using the VEGAN package to do an RDA ordination. In my plot I get my environmental scores as arrows/vectors, but my species scores as points. I would like to get the species scores as arrows as well. I tried the envfit function, and this creates arrows, but the lenght is not proportionate to the strengh of the correlation and the point is still there (so I both have point and arrow). fit - envfit(rdawal, dat.one, perm = 999, display = wa) ordiplot(rdawal, type = p) plot(fit, col = red, add = TRUE, scaling = 2) Is there not a way I can tell R to plot both environmental and species scores as arrows/vectors? Thanks -- View this message in context: http://r.789695.n4.nabble.com/RDA-Triplot-tp3055474p3055474.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Nested variables
Hi. Yes I am trying to model such data, and i need R to know that Site is nested within Habitat. Do I use some kind of command before running the model (like factor() and so on) or do i write it in the model formula. If so, how? Thanks Douglas Bates-2 wrote: On Fri, May 29, 2009 at 7:50 AM, DanielWC daniel.carsten...@gmail.com wrote: Hello I am working with a biological data including variables called Habitat and Site, example: Habitat Site Forest Low Forest Low Forest High Forest High I want to tell R that the Site variable is nested within the Forest variable (that it is not a new variable). Does anyone know how to do this? If you could explain what you mean by tell R, it would help. Are you trying to model such data and you want to know how to express the relationship between such factors in a model formula? __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- View this message in context: http://www.nabble.com/Nested-variables-tp23779402p23813261.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Nested variables
Hello Im am working with a biological data including variables called Habitat and Site, example: Habitat Site Forest Low Forest Low Forest High Forest High I want to tell R that the Site variable is nested within the Forest variable (that it is not a new variable). Does anyone know how to do this? Thanks alot Daniel W. Carstensen Denmark -- View this message in context: http://www.nabble.com/Nested-variables-tp23779402p23779402.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
