On Fri, Sep 25, 2009 at 10:18 AM, Henrik Bengtsson h...@stat.berkeley.edu
wrote:
You can use R.utils (on CRAN) to help you figure out why the file is
not found or not readable.
library(R.utils);
pathname - C:/Documents and Settings/ashta/My Documents/R_data/rel.dat;
pathname - Arguments
You probably want to use the source() command in R.
R CMD BATCH is used from the command line - it's rare that people use
it (unless they really know what they are doing).
/Henrik
On Tue, Sep 22, 2009 at 9:01 AM, Manuj Sharma smanuj1...@yahoo.in wrote:
I tried to use BATCH command to run an
See copyDirectory() in the R.utils package. /hb
On Tue, Sep 22, 2009 at 9:43 AM, Yihui Xie xieyi...@gmail.com wrote:
You assigned values to 'fn' and 'dpath' outside the function body and
use these names as the arguments of your function, so actually 'cyfun'
does not know what 'fn' and 'path'
You *have to* report sessionInfo() when you ask for this kind of help.
It might be that the PNG is actually generated, but it is the viewer
that cannot display it. You can check with other viewers or editors.
You can also try to downscale using ImageMagick, e.g.
convert -geometry 10% large.png
The R.batch package does most of this. It's been several years, but I
used it run batch jobs on multiple (30-40) machines with different
OS:es but sharing the same file system. No communication needed
between hosts. It worked like a charm and I could process 3-4 CPU
years in a few weeks for
Hi,
have a look at help(str) - the str() function will be your friend for life!
...and 99.9% of the error message in R are indeed correct, on the spot
and informative.
So, try str(x$y).
My $.02
/Henrik
On Wed, Sep 16, 2009 at 6:22 PM, Peng Yu pengyu...@gmail.com wrote:
Hi,
As show in the
Not the most beautiful solution: start your message with carriage return, e.g.
stop(\rA long enough message);
A long enough message
stop(\rfoo);
fooor:
/H
On Mon, Sep 14, 2009 at 5:06 PM, Bert Gunter gunter.ber...@gene.com wrote:
I don't believe the solution proposed below works and anyway
As already suggested, you're (much) better off if you specify colClasses, e.g.
tab - read.table(~/20090708.tab, colClasses=c(factor, double, double));
Otherwise, R has to load all the data, make a best guess of the column
classes, and then coerce (which requires a copy).
/Henrik
On Mon, Sep
No (destructive) JPGs - they are evil (draw a line as see for
yourself) and should be banned from publications (only useful for
pictures/photos). Use PNGs for you plots if you don't like vector
graphics. /H
On Mon, Sep 7, 2009 at 5:00 PM, jim holtmanjholt...@gmail.com wrote:
The reason for the
Hi,
I've got a trial version of a thinScatter() function that
(down-)samples 2d-scatter plots while preserving the empirical density
distribution. You can grab it by:
source(http://www.braju.com/R/hbLite.R;);
hbLite(scatterPlots);
Example from example(thinScatter):
library(scatterPlots);
#
On Tue, Sep 1, 2009 at 6:29 AM, Duncan Murdochmurd...@stats.uwo.ca wrote:
On 9/1/2009 8:58 AM, Martin Morgan wrote:
Corrado wrote:
Thanks Duncan, Spencer,
To clarify, the situation is:
1) I have no reasons to choose S3 on S4 or vice versa, or any other
coding convention
2) Our group has
Quite a while ago I put up R Coding Conventions (RCC) - a draft, now at:
http://docs.google.com/View?id=dddzqd53_2646dcw759cb
It's useful for beginners and those coding randomly. Like it or not.
It's ok to try to persuade people coding randomly, but otherwise it is
waste of time to get into
On Fri, Aug 28, 2009 at 9:10 AM, Henrik Bengtssonh...@stat.berkeley.edu wrote:
Quite a while ago I put up R Coding Conventions (RCC) - a draft, now at:
http://docs.google.com/View?id=dddzqd53_2646dcw759cb
Google Docs seems to have a hiccup when it comes to publishing/sharing
docs; here is a
Have a look at Karim Chine's R/Biocep project:
http://biocep-distrib.r-forge.r-project.org/
/henrik
On Wed, Aug 26, 2009 at 9:12 PM, Moshe Olshanskym_olshan...@yahoo.com wrote:
Hi Deb,
Based on your last note (and after briefly looking at Rserve) I believe that
you should install R with
On Fri, Jul 17, 2009 at 11:41 PM, Jim Nemeshnem...@broad.mit.edu wrote:
Hi! I'm trying to learn about object oriented R, as it seems like it
would be very useful.
I'm going over an example from the documentation, and I'm very confused:
http://www1.maths.lth.se/help/R/R.oo/
[assume you've
On Sat, Jul 18, 2009 at 3:21 AM, Henrik Bengtssonh...@stat.berkeley.edu wrote:
On Fri, Jul 17, 2009 at 11:41 PM, Jim Nemeshnem...@broad.mit.edu wrote:
Hi! I'm trying to learn about object oriented R, as it seems like it
would be very useful.
I'm going over an example from the documentation,
Not a suggestion on documentation, but to ease S3 coding and hiding
some of the details, you might want to consider the R.methodsS3
package. It basically provides some S3 code generators and makes it
clear what class of objects a method is dispatched on. From the
example code:
setMethodS3(foo,
See save() and load(), but the following might be easier because it
does not mess with your existing object names:
library(R.utils)
saveObject(pv.lo, myLoessFit.Rbin)
pv.lo - loadObject(myLoessFit.Rbin)
foo - loadObject(myLoessFit.Rbin)
print(identical(pv.lo, foo)) # = TRUE
/Henrik
On Thu,
Google Rstem package - first hit. It is hosted by the Omegahat project. /H
On Thu, Jun 11, 2009 at 10:29 AM, Rajan, Ravira...@rand.org wrote:
Hi,
I can't find the package for LSA. When I try
http://www.statistik.uni-dortmund.de/~ligges/Rstem_0.3-1.zip
using R version 2.9.0 beta (2009-04-04 r48290)
As a start, Kurt et al. are for sure using a much more recent version
(probably also the very latest patched version).
/H
On Tue, Jun 9, 2009 at 7:17 AM, Christophe
Genolinicgeno...@u-paris10.fr wrote:
Hi the list,
I build a package. They was a
library(R.utils);
sourceDirectory(C:/appropriatepath/R/, modifiedOnly=TRUE);
On Tue, Jun 9, 2009 at 8:09 PM, spencergspencer.gra...@prodsyse.com wrote:
Sundar Dorai-Raj taught me to do the following:
Rdir - c:\appropriatepath\R
Rfiles - dir(Rdir, pattern='\\.R$',
Kusnierczyk
waclaw.marcin.kusnierc...@idi.ntnu.no wrote:
wow! :)
vQ
Henrik Bengtsson wrote:
library(gsubfn)
library(gtools)
library(rbenchmark)
n - 1
df - data.frame(
a = rnorm(n),
b = rnorm(n),
c = rnorm(n),
ip = replicate(n, paste(sample(255, 4), collapse
library(gsubfn)
library(gtools)
library(rbenchmark)
n - 1
df - data.frame(
a = rnorm(n),
b = rnorm(n),
c = rnorm(n),
ip = replicate(n, paste(sample(255, 4), collapse='.'), simplify=TRUE)
)
res - benchmark(columns=c('test', 'elapsed'), replications=10, order=NULL,
peda = {
Not really, just the old saying that any piece of code can be made
twice as fast (which often holds true recursively). /Henrik
On Sun, May 31, 2009 at 1:58 PM, Wacek Kusnierczyk
waclaw.marcin.kusnierc...@idi.ntnu.no wrote:
wow! :)
vQ
Henrik Bengtsson wrote:
library(gsubfn)
library(gtools
Argument 'size' is what you are looking for, cf. help(readBin).
Whenever reading binary files this way, I strongly recommend that you
are explicit about all arguments of readBin(), e.g.
readBin(con, what=integer(), size=2, signed=TRUE, endian=little, n=n);
For instance, you probably do not want
Hi,
this sounds awfully similar to what I reported in r-help thread '[R]
Windows Vista, Rterm LeftAlt + Tab issue' on Aug 21, 2008, cf.
https://stat.ethz.ch/pipermail/r-help/2008-August/171548.html
At least we are not alone ;) ...and I though it was an issue with
Windows Vista only, because
You want to do:
temp2 - matrix(rnorm(10),nc=1,nrow=10)
rownames(temp2) - c(a,b,c,d,e,f,g,h,i,j)
print(temp2)
o - order(temp2[,1])
temp2 - temp2[o,,drop=FALSE]
print(temp2)
Note that it makes no difference if you drop the dimension of a single
column vector or not when passed to order().
/H
On
exactly the same results.
My current directory (getwd()) is not C:. I'm puzzled by your output.
-- David
-Original Message-
From: henrik.bengts...@gmail.com [mailto:henrik.bengts...@gmail.com] On
Behalf Of Henrik Bengtsson
Sent: Friday, January 23, 2009 8:36 PM
To: David Reiner dav
[mailto:henrik.bengts...@gmail.com] On
Behalf Of Henrik Bengtsson
Sent: Wednesday, January 28, 2009 5:08 PM
To: David Reiner dav...@rhotrading.com
Cc: SnowManPaddington; r-help@r-project.org
Subject: Re: [R] - Re: for/if loop
On Wed, Jan 28, 2009 at 2:41 PM, dav...@rhotrading.com wrote:
Well
On Wed, Jan 28, 2009 at 2:41 PM, dav...@rhotrading.com wrote:
Well, maybe you are just bad at typing then ;-)
The lines rr==ii, pp==pp+1, etc. are not setting rr and pp but comparing
them.
Probably you want rr - ii and pp - pp+1, etc.
And the last line of your loop 'ii=ii+1' means that,
The script .Rprofile evaluates R code on startup. You could use that
to test for various environment variables. Alternatively, use Unix
shell scripts to set system environment variables to be used in a
generic .Renviron. See help(Startup) for more details.
/Henrik
On Sun, Jan 25, 2009 at
And I'm not sure that list.files(C:, full.names=TRUE) returns
correct pathnames, because it lists the files in the current directory
(of C:), not the root of C:. There is a difference between C: and C:/,
and you should get:
list.files(C:, full.names=TRUE)
[1] C:aFile.txt
[2] C:anotherFile.txt
Do it in chunks of rows. /H
On Sat, Jan 17, 2009 at 6:55 AM, Gundala Viswanath gunda...@gmail.com wrote:
Hi Hadley,
I had to do it by line. Because, in practice, I will
manipulate the figures and string before printing it.
And I can't bind these results into one new object,
because there
= FALSE, quote = TRUE, sep = ,
eol = \n, na = NA, dec = ., row.names = TRUE,
col.names = TRUE, qmethod = c(escape, double))
- Gundala Viswanath
Jakarta - Indonesia
On Sun, Jan 18, 2009 at 12:09 AM, Henrik Bengtsson h...@stat.berkeley.edu
wrote:
Do
See also ll() in the R.oo package, e.g.
# To list all objects in .GlobalEnv:
ll()
member data.class dimension objectSize
1*tmp* Person 1 428
2 as.character.Person function NULL1208
3 country character 1
On Thu, Jan 8, 2009 at 3:12 AM, Gundala Viswanath gunda...@gmail.com wrote:
Dear all,
I found that printing with 'cat' is very slow.
For example in my machine this snippet
__BEGIN__
# I need to resolve to use this type of loop.
# because using write(), I need to create a matrix which
#
stats::vcov.lm
Error: 'vcov.lm' is not an exported object from 'namespace:stats'
stats:::vcov.lm
function (object, ...)
{
so - summary.lm(object, corr = FALSE)
so$sigma^2 * so$cov.unscaled
}
environment: namespace:stats
/Henrik
On Thu, Jan 8, 2009 at 1:44 AM, Carlos J. Gil Bellosta
Hi,
Any R.oo Object must accept no arguments, e.g. Object(). Thus, in
your case you need to be able to support the call MyClass(). The
reason is that the first time you use the class, R.oo will create a
static object of the class by calling ClassName().
Typically, I would do it this way:
On Wed, Nov 26, 2008 at 1:16 PM, Stavros Macrakis [EMAIL PROTECTED] wrote:
I routinely compute with a 2,500,000-row dataset with 16 columns,
which takes 410MB of storage; my Windows box has 4GB, which avoids
thrashing. As long as I'm careful not to compute and save multiple
copies of the
length()
/Henrik
On Mon, Nov 24, 2008 at 9:41 AM, G. Jay Kerns [EMAIL PROTECTED] wrote:
Dear R-help,
I first thought that the empty set (for a vector) would be NULL.
x - c()
x
However, the documentation seems to make clear that there _many_ empty
sets depending on the vector's mode,
To save my fingers and still being on the safe side, I always do:
!0
[1] TRUE
!1
[1] FALSE
;) ...still hackable though.
/Henrik
On Mon, Nov 17, 2008 at 5:25 AM, Duncan Murdoch [EMAIL PROTECTED] wrote:
On 17/11/2008 8:03 AM, hadley wickham wrote:
On Sun, Nov 16, 2008 at 7:41 PM, Simon
To solve the immediate problem of quitting R, you could try to define
a dummy of the missing function, e.g.
validServerIsRunning - function(...) FALSE;
and then quit(). This does of course ignore any potential problems of
not finalizing the 'fame' package correctly. Alternatively, since
the
See 'Writing R Extensions' via help.start() and then search for CITATION.
My $.02 /Henrik
On Sat, Nov 15, 2008 at 2:35 PM, Charles Annis, P.E.
[EMAIL PROTECTED] wrote:
Greetings, R-ians:
I am sure I am missing something obvious.
How do I provide a CITATION file for my home-brew package, so
the obvious
File - Save Page As, because that gives me HTML. Instead, there is a
Save a copy button in the upper left of the subwindow containing
R-exts.pdf, which I must press to get that particular document.
Best Wishes,
Spencer
Henrik Bengtsson wrote:
See 'Writing R Extensions
See ?download.file and argument 'mode'. You want to use mode=wb.
To R-core: I've asked it before, isn't the most common use case to
download files in 'binary' mode? I cannot even remember when I last
wanted to transfer a file in 'text' mode. I vote for making mode=wb
the default.
/Henrik
On
I've also been looking for solutions to similar problems, but I never
found a good solution. However, I think that if it would be possible
to send an interrupt signal/condition by code (cf. user press Ctrl-C)
one could achieve plenty of things with and without tryCatch(). See
Thread 'New
Hi,
On Thu, Nov 6, 2008 at 2:12 AM, Yuri Volchik [EMAIL PROTECTED] wrote:
Thanks for reply Henrik, seems obvious now.
Can child class (B) access argument of the parent class, i.e. can i rewrite
definition of the class B as
setConstructorS3(ClassB, function() {
extend(ClassA(), ClassB,
Hi, a follow up on this: I've fixed the below bug in writeMat().
R.matlab v1.2.4 is now available on CRAN. Please update.
Henrik
On Tue, Oct 28, 2008 at 3:30 PM, Henrik Bengtsson [EMAIL PROTECTED] wrote:
Hi,
On Tue, Oct 28, 2008 at 2:25 PM, Minho Chae [EMAIL PROTECTED] wrote:
Dear R users
Hi, a follow up on this as well: I've fixed the below bug in
writeMat(). R.matlab v1.2.4 is now available on CRAN. Please update.
Henrik
On Wed, Oct 1, 2008 at 12:55 PM, Henrik Bengtsson [EMAIL PROTECTED] wrote:
Hi.
On Sat, Sep 27, 2008 at 5:17 AM, Steele, Dr Douglas [EMAIL PROTECTED
A - matrix(-4:4, ncol=3)
A
[,1] [,2] [,3]
[1,] -4 -12
[2,] -303
[3,] -214
Apos - A; Apos[A = 0] - NA;
Apos
[,1] [,2] [,3]
[1,] NA NA2
[2,] NA NA3
[3,] NA14
Aneg - A; Aneg[A = 0] - NA
Aneg
[,1] [,2] [,3]
[1,] -4 -1 NA
Hi,
On Tue, Oct 28, 2008 at 2:25 PM, Minho Chae [EMAIL PROTECTED] wrote:
Dear R users,
I am tryting to save an 3d array to a matlab file like the following.
A - array(1:24, c(2,3,4))
writeMat(filename, A=A)
But if I load the mat file from Matlab, it is not 3d matrix anymore.
Does anyone
Hi,
comments below.
On Fri, Oct 24, 2008 at 1:47 PM, Aditya Udas [EMAIL PROTECTED] wrote:
Hi Henrik,
I'm sorry to be bothering you, but there is something that I have been
stuck with for a while now.
I am trying to create a class like :
setConstructorS3(MyPTCM,function(tokenslist=0)
{
Check out the 'fancyvrb' latex package - that is quite flexible and I
wouldn't be surprised if it can help you. Make sure to read the docs
(fancyvrb.pdf).
/H
On Fri, Oct 17, 2008 at 8:37 PM, erwann rogard [EMAIL PROTECTED] wrote:
Thanks for clarifying. Yes, \$ works in latex, but not *within*
Hi.
On Sat, Sep 27, 2008 at 5:17 AM, Steele, Dr Douglas [EMAIL PROTECTED] wrote:
Hi
I am using Ubuntu 8.04 64 bit, R as below, Matlab 7.6.0. I would like to
transfer mat files back and forward between R and Matlab. Whilst I have used
Matlab for years its been a long time since I have
See ?sprintf, e.g. x2Str - sprintf(%02d, as.integer(x)) where 'x2'
is numeric. Use x - as.numeric(xStr) to convert string 'xStr' to
numeric and x - x + 1 to change the value.
/HB
On Wed, Sep 24, 2008 at 2:51 PM, [EMAIL PROTECTED] wrote:
this seems l ike it shouldn't be that hard but i give
Hi,
Bioconductor.org is the home of the geneplotter package. You get a
quicker response if you ask there.
/Henrik
On Mon, Sep 22, 2008 at 7:06 AM, Jason Pare [EMAIL PROTECTED] wrote:
Hello,
I am attempting to use smoothScatter to plot a heatmap of locations of
events in an x-y axis. When I
x - c(123023,143494035);
format(x, big.mark=,);
[1] 123,023 143,494,035
format(x, big.mark=,, trim=TRUE);
[1] 123,023 143,494,035
See also ?prettyNum (and formatC).
/Henrik
On Mon, Sep 22, 2008 at 9:23 PM, Matthew Pettis
[EMAIL PROTECTED] wrote:
Hi,
Search through the R archives,
R-core, may I suggest that the error message returns the absolute path
(or even the relative path) and not just the filename/basename, e.g.
Fatal error: unable to restore saved data in C:/Users/foo/.RData
/Henrik
On Thu, Sep 18, 2008 at 6:41 AM, Green, Paul [EMAIL PROTECTED] wrote:
We are
Hi.
On Thu, Sep 18, 2008 at 8:16 AM, Duncan Murdoch [EMAIL PROTECTED] wrote:
On 18/09/2008 10:55 AM, Henrik Bengtsson wrote:
R-core, may I suggest that the error message returns the absolute path
(or even the relative path) and not just the filename/basename, e.g.
Fatal error: unable
What have you tried this far? Can't you parse them as missing values,
i.e. NAs? See ?read.csv and arguments '...', i.e. the arguments
'...' are passed to read.table() which takes argument 'na.strings' - a
character *vector* of strings that you want to be interpreted as NAs.
See ?read.table for
On Thu, Sep 18, 2008 at 1:39 PM, Michael A. Gilchrist [EMAIL PROTECTED] wrote:
Wow, that's elegant and simple. It's also faster than my approach.
NB, you don't need to use close(), read.delim() closes the pipe when its
done reading.
If read.delim() close the connection in this case, it's a
See ?order, ?sort, and possibly match(). Pay attention to the
arguments provided. /Henrik
On Tue, Sep 16, 2008 at 8:04 AM, Peng Jiang [EMAIL PROTECTED] wrote:
Dear R experts,
i have a vector z , i have to do something after z is sorted. how can i
find the original index, i.e., before
Hi,
a few comments below.
On Fri, Sep 12, 2008 at 9:34 AM, Michael A. Gilchrist [EMAIL PROTECTED] wrote:
Hello,
I am currently using R to run an external program and then read the results
the external program sends to the stdout which are tsv data.
When R reads the results in it converts
On Fri, Sep 12, 2008 at 6:02 AM, Antje [EMAIL PROTECTED] wrote:
Hi there,
I have a nested call of lapply in which I do a tryCatch statement like this
lapply(1:length(p_names), function(w_idx) {
r - as.numeric(pos_r[[w_idx]][1])
c - as.numeric(pos_c[[w_idx]][1])
pos -
See argument 'col' to plot()/points(). Setup a 'col' vector of length
equal to the number of data points and have the 'C' variable specify
the colors of the individual elements. Then call plot()/points() with
argument 'col'.
My $.02
/HB
On Fri, Sep 12, 2008 at 3:29 PM, Amanda Young [EMAIL
me, especially (again) to Henrik Bengtsson
cheers,
Rolf
##
Attention:\ This e-mail message is privileged and confid...{{dropped:9}}
__
R-help
Wow...
source() on a text file is the way to go - forget everything else. If
you have multiple *.R script files, in a directory, say R/, you can
load them all by:
pathnames - list.files(pattern=[.]R$, path=R/, full.names=TRUE);
sapply(pathnames, FUN=source);
or even shorter:
This sounds vaguely familiar to me. This could be reason for why I
wrote mkdirs() of the R.utils package. mkdirs() does it's own
(manual) recursive creation of directories. See if that does it for
you.
/Henrik
On Wed, Sep 3, 2008 at 1:14 AM, Francisco Jose Sastre [EMAIL PROTECTED] wrote:
know what.
Thank you.
On Tue, Sep 9, 2008 at 8:58 PM, Henrik Bengtsson [EMAIL PROTECTED]
wrote:
Hi,
On Tue, Sep 9, 2008 at 9:53 AM, erola pairo [EMAIL PROTECTED] wrote:
I write a .mat file using the writeMat() command, but when i try to load
it
in Matlab it says that file may
Seems that one of the slashed is dropped after the protocol prefix,
i.e. http:/search.r-project.org/... should be
http://search.r-project.org/... Someone else has to take it from
here.
/Henrik
On Wed, Sep 10, 2008 at 2:03 PM, Rolf Turner [EMAIL PROTECTED] wrote:
I tried to search for a
On Wed, Sep 10, 2008 at 3:09 PM, Marc Schwartz
[EMAIL PROTECTED] wrote:
on 09/10/2008 04:49 PM Rolf Turner wrote:
On 11/09/2008, at 9:29 AM, Marc Schwartz wrote:
on 09/10/2008 04:03 PM Rolf Turner wrote:
I tried to search for a string of words ``as one entity'' following the
example in the
On Tue, Sep 9, 2008 at 6:31 AM, Nic Larson [EMAIL PROTECTED] wrote:
Need to buy fast computer for running R on. Today we use 2,8 MHz intel D cpu
and the calculations takes around 15 days. Is it possible to get the same
calculations down to minutes/hours by only changing the hardware?
Should I
names - sprintf(V%d, 1:4);
n - length(names);
stopifnot(n = 32); # Theoretical upper limit
x - matrix(intToBits(1:(2^n-1)), ncol=2^n-1);
x - x[1:n,,drop=FALSE];
keys - apply(x, MARGIN=2, FUN=function(z) paste(names[as.logical(z)],
collapse=:));
print(keys);
[1] V1 V2 V1:V2
Alternatively you can use saveObject() and loadObject() of R.utils -
that will not hardwire the name of the loaded object avoiding name
conflicts, e.g.
library(R.utils);
foo - 1:10;
saveObject(foo, file=foo.RData);
bar - loadObject(foo.RData);
/HB
On Thu, Sep 4, 2008 at 8:44 AM, Williams, Robin
On Thu, Sep 4, 2008 at 8:44 PM, Ralph S. [EMAIL PROTECTED] wrote:
Hi all,
I am trying to create a unique identifier for each row, combining numbers
from three columns.
Do you know if there is a general formula to do this (or some manual where I
can read about this)?
I figure I can use
Note:
n - 100;
x - rnorm(n);
t1 - system.time({
xp - prod(x);
xpA2 - xp/x[n];
xpB2 - xp/x[1];
});
is calculating the product only once and is *constant in memory*.
With the suggest approach you are not only calculating the same thing
twice but you are also allocating a lot of memory,
On Thu, Aug 28, 2008 at 10:42 AM, stephen sefick [EMAIL PROTECTED] wrote:
WHAT is this in reguard too?
It seems to be a message from another universe (SAS something) -
maybe a wormhole? Are we not alone?
/H
On Thu, Aug 28, 2008 at 12:56 PM, Ajay ohri [EMAIL PROTECTED] wrote:
For the
Hi,
my Rterm does not longer take key presses after I have pressed Left
Alt+Tab in order to switch away from an active Rterm window. I have
found a way to get Rterm to respond again. I basically have to kill
the process.
This occurs on a fresh Windows Vista Business 32-bit installation
(with
Wow, one of those might binary file format likely to be dumped from
memory by a C/C++ program. ...anyway, here is how I deal with
interveawed data types:
# Read all of the file as raw (bytes) values
fileSize - file.info(pathname)$size;
raw - readBin(pathname, what=raw, n=fileSize);
# Sanity
In your function, split up your code in two lines as:
pathname - paste(test , deparse(substitute(series)), i, .jpg);
jpeg(filename=pathname, width=1200, height=800, pointsize=12,
quality=400, bg=white);
The focus on what 'pathname' is/becomes when you put it inside your
function. That will help
Hi,
this is clearly a Bioconductor-specific issue. Please post your
question to the Bioconductor mailing list instead.
/Henrik
On Mon, Aug 18, 2008 at 12:20 AM, Tae-Hoon Chung [EMAIL PROTECTED] wrote:
Hi, All;
I simply followed the exonmap vignette but came up with an unexpected
error.
/Henrik
On Mon, Aug 18, 2008 at 8:10 AM, Ben Bolker [EMAIL PROTECTED] wrote:
Henrik Bengtsson hb at stat.berkeley.edu writes:
The few times I want to patch a function like this, I use:
unlockBinding(name, env);
assignInNamespace(name, value, ns=pkgName, envir=env);
assign(name, value
...or use the more generic substitute() to replace parts of an expression, e.g.
i - 3;
xlab1 - substitute(g[idx], list=list(idx=i));
xlab2 - bquote(g[.(i)]);
stopifnot(identical(xlab1, xlab2));
/Henrik
On Mon, Aug 18, 2008 at 3:18 PM, Marc Schwartz
[EMAIL PROTECTED] wrote:
on
...and see saveObject() and loadObject() in R.utils, which might do
what you expected, e.g.
x - stats::runif(20)
y - list(a=1, b=TRUE, c=oops)
saveObject(list(foo=x,bar=y), xy.Rdata)
xy - loadObject(xy.Rdata)
str(xy)
List of 2
$ foo: num [1:20] 0.1154 0.6534 0.0876 0.5977 0.6841 ...
$
The few times I want to patch a function like this, I use:
unlockBinding(name, env);
assignInNamespace(name, value, ns=pkgName, envir=env);
assign(name, value, envir=env);
lockBinding(name, env);
/Henrik
On Sun, Aug 17, 2008 at 10:50 AM, Gabor Grothendieck
[EMAIL PROTECTED] wrote:
In
See the Object class in the R.oo package. /Henrik
On Thu, Aug 14, 2008 at 7:35 PM, Abiel Reinhart [EMAIL PROTECTED] wrote:
I would like to use a text string to get a reference to an object whose name
is the text string. I have seen people using get() for this purpose, but as
far as I can tell
On Fri, Aug 15, 2008 at 6:43 AM, Benjamin Otto
[EMAIL PROTECTED] wrote:
Hi Erik,
Yes this is what I was trying and your example or the one of luke is working
fine with me.
So now I'm not sure if this is due to an environment which takes too much
space. The environment troubling me has
Hmm,
couldn't resists:
X - NA
is.logical(X)
[1] TRUE
(X == TRUE)
[1] NA
==.MaybeNA - function(e1, e2) { !is.na(e1) (e1 == e2) }
X - structure(NA, class=MaybeNA)
is.logical(X)
[1] TRUE
(X == TRUE)
[1] FALSE
Ta da ;)
Henrik
PS. It might be worth mentioning base::isTRUE() when we're
FYI,
there is an isZero() in the R.utils package that allows you to specify
the precision. It looks like this:
isZero - function (x, neps=1, eps=.Machine$double.eps, ...) {
(abs(x) neps*eps);
}
/Henrik
On Wed, Aug 13, 2008 at 8:23 AM, Roland Rau [EMAIL PROTECTED] wrote:
Hi,
since many
See ?traceback
/Henrik
On Wed, Aug 13, 2008 at 7:33 PM, [EMAIL PROTECTED] wrote:
This is both a specific question and a general one. First, I am running
'fitdistr' from library(MASS) and I get the following:
Error in fitdistr(templist, weibull) : optimization failed
What is the cause of
Since as long as I can remember, on Windows there is something called
Alt [Key Numeric] Codes, which allows you to enter many symbols that
are not directly accessible via a single key, cf.
http://en.wikipedia.org/wiki/Alt_codes
For lists of Alt codes, see for instance
With AutoIt [http://www.autoitscript.com/] you can setup scripts that
send keyboard and mouse events, wait for windows to open and more. It
is quite powerful.
/Henrik
On Tue, Aug 12, 2008 at 4:51 AM, [EMAIL PROTECTED] wrote:
OK thanks, Tolga
Prof Brian Ripley [EMAIL PROTECTED]
12/08/2008
To simplify:
n - 2.7e6;
x - factor(c(rep(A, n/2), rep(B, n/2)));
# Identify 'A':s
t1 - system.time(res - which(x == A));
# To compare a factor to a string, the factor is in practice
# coerced to a character vector.
t2 - system.time(res - which(as.character(x) == A));
# Interestingly enough,
See help(list) and help([[) ...and 'An Introduction to R'.
/Henrik
On Tue, Aug 12, 2008 at 7:49 PM, Gareth Campbell [EMAIL PROTECTED] wrote:
Hi there,
I know this is probably a really simple question, but without the correct
keywords, or knowledge of the correct function it is hard to search
Are you aware that that matrix will have 147456^2 elements each of
size 8 bytes (double) resulting in R trying to allocate
(147456^2)*8/1024^3 = 162 GB of RAM?
If you are aware of this and still trying to allocate a large matrix,
it is unfortunately too large due to technical limitations in R.
See dataFrame() in R.utils. It was design for the purpose of
allocating empty data frames in an efficient way.
Example:
library(R.utils);
df - dataFrame(colClasses=c(a=integer, b=double), nrow=10);
str(df)
'data.frame': 10 obs. of 2 variables:
$ a: int 0 0 0 0 0 0 0 0 0 0
$ b: num 0 0
On Sat, Aug 2, 2008 at 3:56 PM, hpdutra [EMAIL PROTECTED] wrote:
That works. I still think you should have named RESHAPE as MAGIC! It is
amazing how much of a time-saver this tool is!
Following that suggest would make it even harder for you to find the
package you're looking for - there are
Hi.
On Mon, Jul 28, 2008 at 11:21 AM, Ted Harding
[EMAIL PROTECTED] wrote:
On 28-Jul-08 17:52:31, Henrik Bengtsson wrote:
Use '' for vectors and '' for scalars. Ditto applies to the OR
operator(s). /Henrik
What's wrong with using for scalars? Surely it gives the
correct answer? Maybe
On Mon, Jul 28, 2008 at 4:29 PM, Duncan Murdoch [EMAIL PROTECTED] wrote:
On 28/07/2008 6:42 PM, [EMAIL PROTECTED] wrote:
Hello R help list
I have been using the smoothScatter function within the geneplotter
package to make some graphs using a Sweave Rnw script called via Rscript
in a
See EBImage on Bioconductor.org. /Henrik
On Sun, Jul 27, 2008 at 10:21 PM, Arthur Roberts
[EMAIL PROTECTED] wrote:
Hi, all,
I am having trouble getting R to take pnm images via mogrify
i.e.
mogrify -resize 320x217 -format pnm *.png
However R via pixmap says that it can't read the file.
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