Dear All,
Please, is there any package in R that has implemented ridge regression for
beta and gamma models?
If not, kindly help me to adjust my model below for the beta regression so as
to accommodate ridge
penalty. Thanks.
lbeta - function(par,y,X){
n -length(y)
k - ncol(X)
beta -
Hi all,
I have run a ridge regression on a data set 'final' as follows:
reg=lm.ridge(final$l~final$lag1+final$lag2+final$g+final$u,
lambda=seq(0,10,0.01))
Then I enter :
select(reg) and it returns: modified HKB estimator is 19.3409
modified L-W
Unlike L1 (lasso) regression or elastic net (mixture of L1 and L2), L2 norm
regression (ridge regression) does not select variables. Selection of
variables would not work properly, and it's unclear why you would want to
omit apparently weak variables anyway.
Frank
maths123 wrote
I have a .txt
Frank Harrell f.harrell at vanderbilt.edu writes:
Unlike L1 (lasso) regression or elastic net (mixture of L1 and L2), L2 norm
regression (ridge regression) does not select variables. Selection of
variables would not work properly, and it's unclear why you would want to
omit apparently weak
Hi Michael,
The coefficients of ridge regression are given by:
\beta^* = (X'X + k I)^{-1} X' y, (1)
where k 0 is the penalty parameter and I is the identity matrix.
The ridge estimates are related to OLS estimates \beta as follows:
\beta^* = Z \beta,
For an application of ridge regression, I need to get the covariance
matrices of the estimated regression
coefficients in addition to the coefficients for all values of the ridge
contstant, lambda.
I've studied the code in MASS:::lm.ridge, but don't see how to do this
because the code is
Dear R users,
An equivalence between linear mixed model formulation and penalized
regression
models (including the ridge regression and penalized regression splines) has
proven to be very useful in many aspects. Examples include the use of the lme()
function in the library(nlme) to fit
Curious - what would be the purpose of this regression?
On Mon, Oct 4, 2010 at 4:39 PM, harez...@post.harvard.edu
jarek...@yahoo.com wrote:
Dear R users,
An equivalence between linear mixed model formulation and penalized
regression
models (including the ridge regression and penalized
-project.org]
On
Behalf Of Ravi Varadhan
Sent: Wednesday, December 02, 2009 12:25 PM
To: 'David Winsemius'; 'Eleni Christodoulou'
Cc: r-help@r-project.org
Subject: Re: [R] Ridge regression
You are right that the ans$coef and coef(ans) are different in ridge
regression, where `ans' is the object
-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On
Behalf Of Ravi Varadhan
Sent: Wednesday, December 02, 2009 12:25 PM
To: 'David Winsemius'; 'Eleni Christodoulou'
Cc: r-help@r-project.org
Subject: Re: [R] Ridge regression
You are right that the ans$coef and coef(ans
Subject: Re: [R] Ridge regression
I am sorry, I just pressed the send button by accident before completing
my e-mail. The yest are the estimated values according to the ridge model.
Is the way that I calculate them correct? Or should I cut the
+coef(ridge.test)[1] term?
Thanks a lot!
Eleni
On Fri
...@gmail.com]
*Sent:* Friday, January 08, 2010 11:18 AM
*To:* Ravi Varadhan
*Cc:* David Winsemius; r-help@r-project.org
*Subject:* Re: [R] Ridge regression
I am sorry, I just pressed the send button by accident before completing
my e-mail. The yest are the estimated values according
Dear list,
I have a couple of questions concerning ridge regression. I am using the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus *model=lm.ridge(...)*
I retrieve some coefficients and some scales for each gene. First of all, I
would like to ask: the real coefficients
On Dec 2, 2009, at 10:42 AM, Eleni Christodoulou wrote:
Dear list,
I have a couple of questions concerning ridge regression. I am using
the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus *model=lm.ridge(...)*
I retrieve some coefficients and some scales for each
On Dec 2, 2009, at 11:04 AM, David Winsemius wrote:
On Dec 2, 2009, at 10:42 AM, Eleni Christodoulou wrote:
Dear list,
I have a couple of questions concerning ridge regression. I am
using the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus
: r-help@r-project.org
Subject: Re: [R] Ridge regression
On Dec 2, 2009, at 10:42 AM, Eleni Christodoulou wrote:
Dear list,
I have a couple of questions concerning ridge regression. I am using
the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus *model=lm.ridge
'; 'Eleni Christodoulou'
Cc: r-help@r-project.org
Subject: Re: [R] Ridge regression
You are right that the ans$coef and coef(ans) are different in ridge
regression, where `ans' is the object from lm.ridge. It is the coef(ans)
that yields the coefficients on the original scale. ans$coef
Thanks for the suggestion. But It will be more helpful if anybody comment on
why I'm getting different outputs for three approaches.
-
Sabyasachi Patra
PhD Scholar
Indian institute of Technology Kanpur
India.
--
View this message in context:
Dear all,
I considered an ordinary ridge regression problem. I followed three
different ways:
1. estimate beta without any standardization
2. estimate standardized beta (standardizing X and y) and then again convert
back
3. estimate beta using lm.ridge() function
If you didn't post anonymously I would have made a suggestion. Full
names and affiliations should be given.
Frank
spime wrote:
Dear all,
I considered an ordinary ridge regression problem. I followed three
different ways:
1. estimate beta without any standardization
2. estimate standardized
Dear all,
For an ordinary ridge regression problem, I followed three different
approaches:
1. estimate beta without any standardization
2. estimate standardized beta (standardizing X and y) and then again convert
back
3. estimate beta using lm.ridge() function
Sabyasachi Patra wrote:
Dear all,
For an ordinary ridge regression problem, I followed three different
approaches:
1. estimate beta without any standardization
2. estimate standardized beta (standardizing X and y) and then again convert
back
3. estimate beta using lm.ridge() function
Thanks to all of you that helped me with the issues of bootstrapping
and downloading packages to a local disk.
As an starter I'm in the lower side of the learning curve, but this R
software is awesome. What I like most is this kind of forums when
people share their problems and we can find
Thanks to all of you that helped me with the issues of bootstrapping
and downloading packages to a local disk.
As an starter I'm in the lower side of the learning curve, but this R
software is awesome. What I like most is this kind of forums when
people share their problems and we can find
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