Rsamtools and GenomicAlignments are Bioconductor packages so ask on the
Bioconductor support site
https://support.bioconductor.org
You cannot rename the seqlevels in the bam file; you could rename the
seqlevels in the object(s) you have created from the bam file.
Martin
On 02/14/2017
Dear all,
I would like to ask if it is possible to change the seqnames of a bam file
giving a vector of character to the function renameSeqlevels. This is
because in order to use the fuction summarizeOverlap or count/find, the
seqnames have to match.
>From the bamfile below I have extracted the
2 matches
Mail list logo
