Dear R users,
Usually the variance-inflation factor, which is based on R^2, is used as a
measure for multicollinearity. But, in contrast to OLS regression there is
no robust R^2 available for MM-regressions in R. Do you know if an
equivalent or an alternative nmeasure of multicollinearity is
On Mon, 16 Aug 2004 [EMAIL PROTECTED] wrote:
Dear R users,
Usually the variance-inflation factor, which is based on R^2, is used as a
measure for multicollinearity.
I disagree, strongly, that this is `usual' practice.
But, in contrast to OLS regression there is
no robust R^2 available
Dear expeRts,
I collect some lab specific functions for a package.
Some of this functions need initial data
(ini files written in R-code). My question is:
Where is the place in the package structure for such files;
how to load the files?
I think something like:
I think was better for you to save data
with save(your.ini.RData) and use load(your.ini.RData)
to load it.
Best!
A.S.
Alessandro Semeria
Models and Simulations Laboratory
Montecatini Environmental Research Center (Edison Group),
Via Ciro Menotti 48,
48023 Marina di
Please do read what writing R extensions says about the data directory.
This is not a correct use of that directory, and may well fail in the next
release.
I suggest you install them in an ini directory, by putting them in
inst/ini in the package sources.
On Mon, 16 Aug 2004 [EMAIL PROTECTED]
Hello!
What is wrong on my system?
I have downloaded today R 1.9.1 on my PC with Windows.
plot.table isn't available in package base and neither in package graphics (as
suggested after ?plot.table).
Kind regards
Meinhard Ploner
[[alternative HTML version deleted]]
R-help,
I have a barplot and I wish to add standard erros (or deviations) bars to it.
How?
Thank you
Luis Ridao Cruz
Fiskirannsóknarstovan
Nóatún 1
P.O. Box 3051
FR-110 Tórshavn
Faroe Islands
Phone: +298 353900
Phone(direct): +298 353912
Mobile: +298 580800
Fax:
Meinhard GMX wrote:
Hello!
What is wrong on my system?
I have downloaded today R 1.9.1 on my PC with Windows.
plot.table isn't available in package base and neither in package graphics (as suggested after ?plot.table).
No. plot.table() is in package graphics:
graphics:::plot.table
but hidden in
I don't see anything in ?plot.table about calling plot.table: the usage is
stated as
## S3 method for class 'table':
plot(x, type = h, ylim = c(0, max(x)), lwd = 2,
xlab = NULL, ylab = NULL, frame.plot = is.num, ...)
Perhaps you are trying to use it incorrectly? plot.table
Hi,
On Mon, 16 Aug 2004, Meinhard GMX wrote:
Hello!
What is wrong on my system?
I have downloaded today R 1.9.1 on my PC with Windows.
plot.table isn't available in package base and neither in package graphics (as
suggested after ?plot.table).
You should not use plot.table. Use plot(x)
Luis Rideau Cruz [EMAIL PROTECTED] writes:
R-help,
I have a barplot and I wish to add standard erros (or deviations) bars to it.
How?
par(ask=T);example(barplot)
should give you the general idea.
--
O__ Peter Dalgaard Blegdamsvej 3
c/ /'_ --- Dept. of
Hi,
On Mon, 16 Aug 2004, Luis Rideau Cruz wrote:
R-help,
I have a barplot and I wish to add standard erros (or deviations) bars to it.
How?
Marc Schwartz has an article on this in R News 3/2 (October 2003).
HTH,
Kevin
Ko-Kang Kevin Wang
PhD Student
Centre
Hi Luis,
take a look at these two links:
http://tolstoy.newcastle.edu.au/R/help/04/06/1129.html
http://tolstoy.newcastle.edu.au/R/help/04/06/1134.html
I hope this helps.
Best,
Dimitris
Dimitris Rizopoulos
Doctoral Student
Biostatistical Centre
School of Public Health
Catholic University
--- [EMAIL PROTECTED] wrote:
Dear R users,
Usually the variance-inflation factor, which is based on R^2, is
used as a
measure for multicollinearity. But, in contrast to OLS regression
there is
no robust R^2 available for MM-regressions in R. Do you know if an
equivalent or an alternative
Dear all.
I am trying to buy a hp server to run R and to complete some other tasks
with limited bugets. The r-project.org site recommended that R will run on
hppa-hp-hpux. However this system is out of our buget and ML system from hp
is much cheaper. Is there anybody running R on ML370 or ML
On Mon, 16 Aug 2004, Li, Aiguo (NIH/NCI) wrote:
I am trying to buy a hp server to run R and to complete some other tasks
with limited bugets. The r-project.org site recommended that R will run on
hppa-hp-hpux.
I don't think they are _recommended_ there.
However this system is out of our
As our IT man is currently on holiday I am not able to upgrade to version
1.9.0(or 1.9.1) at the moment, and I see that the gregmisc library will
not work on earlier versions (I am using 1.8.0). Does anyone have any
other suggestions how I might be able to acheive this?
Thank you
Laura Quinn
Hi Laura,
Off the top of my head I'd suggest something like this (assuming your
data frames are named a and b)
a$ord - 1:nrow(a)
b$ord - (1:nrow(b))*2
c - rbind(a, b)
c - c[order(c$ord), ]
ie. add a new column that has the desired ordering, then join the two
data frames together, then reorder.
or something like
new.frame-rbind(x.frame,y.frame); # A frame of the right size.
new.frame[seq(1,nrow(x.frame),by=2),] - x.frame # Assign every other row
new.frame[seq(2,nrow(x.frame),by=2),] - y.frame # Assign every other row.
-Original Message-
From: Laura Quinn [mailto:[EMAIL
Oops there was a bug...
new.frame-rbind(x.frame,y.frame); # A frame of the right size.
new.frame[seq(1,nrow(new.frame),by=2),] - x.frame # Assign every other row
new.frame[seq(2,nrow(new.frame),by=2),] - y.frame # Assign every other
row.
-Original Message-
From: Samuelson, Frank*
Archived versions of gregmisc (and other packages) are available from:
http://cran.r-project.org/src/contrib/Archive/
Download one of the older versions (ie. 0.8.5) and install it from a
console using R CMD INSTALL.
If you are restricted from installing packages to the main R tree (ie.
you do
Laura == Laura Quinn [EMAIL PROTECTED]
on Mon, 16 Aug 2004 14:33:45 +0100 (BST) writes:
Laura As our IT man is currently on holiday I am not able
Laura to upgrade to version 1.9.0(or 1.9.1) at the moment,
Laura and I see that the gregmisc library will not work on
Laura
Yes, make a local installation on your home directory or another machine
which you have write access to.
AFAIK, you cannot update R itself. You will need to install R-1.9.1 and
delete the old version as opposed to upgrading from it. You can try to
salvage the lib directory but it is much better
Dear all
We am trying to buy a computer with limited buget and I would like to make
sure that R can be installed and run on it. Does anybody has a R build for
wz1002-sun-redhad(linux) and sunfire402-sun-redhat(linux)? As far as I know
these two systems are both 64 bits architechture and have
Dear list,
Apologies, I have sent this message before but received no replies so I'm
trying again just in case...
Motivated by the discovery of 'loglet analysis'
(http://phe.rockefeller.edu/LogletLab/) that allows decomposition of growth
curves into a series of logistic equations, I attempted to
Hi
After searching through a couples of documents and the mailing list I
dare to ask it here
I need to define an array with the size 64 x 64 x 16 x 1000 for
single-precision floating-point numbers. With 1G RAM I get always the
error:
cannot allocate vector of size 458752 Kb
reached total
Shalini Raghavan
3M Pharmaceuticals Research
Building 270-03-A-10, 3M Center
St. Paul, MN 55144
E-mail: [EMAIL PROTECTED]
Tel: 651-736-2575
Fax: 651-733-5096
- Forwarded by Shalini Raghavan/US-Corporate/3M/US on 08/16/2004 11:25
AM -
On Mon, 16 Aug 2004, Christoph Lehmann wrote:
After searching through a couples of documents and the mailing list I
dare to ask it here
I don't believe you read the rw-FAQ as the posting guide asks, though.
You seem to be working under Windows, without saying so (and the posting
guide does
Hi there I teach a statistics class with R ( the first time ever with R)
and some of my students have windows at home and they want to be able to
graphs tjhey make in our college ( that only has Linux) and oopen with
windows, I think the best wya would be saving it as a JPEG file but I
don't
Thank you, Prof. Ripley
I don't believe you read the rw-FAQ as the posting guide asks, though.
You seem to be working under Windows, without saying so (and the posting
guide does ask you to). So that's `a couples of documents' worth
`searching through'.
I apologize for not being more precise.
On Mon, 16 Aug 2004, Paolo Tommasini wrote:
Hi there I teach a statistics class with R ( the first time ever with R)
and some of my students have windows at home and they want to be able to
graphs tjhey make in our college ( that only has Linux) and oopen with
windows, I think the best wya
look at
?jpeg
PNG format might be better:
?png
Arne
On Monday 16 August 2004 18:48, Paolo Tommasini wrote:
Hi there I teach a statistics class with R ( the first time ever with R)
and some of my students have windows at home and they want to be able to
graphs tjhey make in our college (
I'm using the following command to run R in Windows
Rterm --no-save --no-restore Rscriptfile Rstdoutfile
How can I capture the text sent by R to stderr in a file?
Thanks,
- Moises
[[alternative HTML version deleted]]
__
Hello,
I am having trouble understanding how R is coercing between matrices and
lists in the following example. I have an aggregate behavior I like:
aggregate(a[,num],by=list(product=a[,product],region=a[,region]),
sum)
Now in reality I have more columns than just product and region, and
need
Moises Hassan wrote:
I'm using the following command to run R in Windows
Rterm --no-save --no-restore Rscriptfile Rstdoutfile
How can I capture the text sent by R to stderr in a file?
Rterm --no-save --no-restore Rscriptfile 21 Rstdoutfile
I'd rather use R CMD BATCH anyway.
Uwe Ligges
On Mon, 16 Aug 2004 10:25:08 -0700, Moises Hassan
[EMAIL PROTECTED] wrote :
I'm using the following command to run R in Windows
Rterm --no-save --no-restore Rscriptfile Rstdoutfile
How can I capture the text sent by R to stderr in a file?
That depends on your shell. The standard
Hello there,
Using 1.9.0 on WinXP...
I have a data frame, one column of which is named rate. The column has
text entries like fast, medium, slow, very slow, and so forth. I
have not tried to make them factors, but maybe R did this automatically.
Anyway, I would like to display on the console
I wrote the message below, but it's just plain wrong.
The CMD.EXE shell in Win XP (and 2K?) allows redirection of stderr in
the usual Unix style:
Rterm --no-save --no-restore Rscriptfile Rstdoutfile
2Rstderrfile
You can also use 21 to redirect stderr into the stdout stream, so
both go to
df[ df$rate==slow, ]
On Mon, 2004-08-16 at 18:48, Randy Zelick wrote:
Hello there,
Using 1.9.0 on WinXP...
I have a data frame, one column of which is named rate. The column has
text entries like fast, medium, slow, very slow, and so forth. I
have not tried to make them factors, but
On Mon, 16 Aug 2004, Duncan Murdoch wrote:
The CMD.EXE shell in Win XP (and 2K?) allows redirection of stderr in
the usual Unix style:
(Yes, all NT-based versions of Windows.)
Rterm --no-save --no-restore Rscriptfile Rstdoutfile
2Rstderrfile
You can also use 21 to redirect stderr
Hi all,
I need to run a sum of squares simultaneous test procedure (SS-STP) with
R, although I didn't find a function to do this. The command se.contrast
returns the standard errors for one or more contrasts in an analysis of
variance, although it is designed for planned comparisons, and I need
Dear R--Help,
My current research focuses upon sensitivity analyses which require [1]
clusterings of patients in a baseline-covariate X space and [2] examining
the distribution of within-cluster treatment differences in outcome. I
have some primitive R code for this, but I want to be able to
On Sun, Aug 15, 2004 at 02:28:03PM +0200, Christoph Scherber wrote:
Dear all,
How can I analyze a life table (e.g. for a cohort of insects) in R?
I have 20 insects in 200 cages with two different treatments, whose
survival is followed over time, such that, e.g., in one treatment, the
I am using the dotplot function from the lattice package to
display a quantitative variable versus two factors, say 'a' and
'b'. The levels of 'a' are nested within levels of 'b'. The
issue is that dotplot includes all the levels of 'a' in each panel
(conditioning on 'b'), even though many are
The easiest way to do that is
subset(dataframe, rate == slow).
Please let me know if you have any more questions.
Kevin
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Randy Zelick
Sent: Monday, August 16, 2004 10:49 AM
To: R list server posting
On Monday 16 August 2004 17:06, Raubertas, Richard wrote:
I am using the dotplot function from the lattice package to
display a quantitative variable versus two factors, say 'a' and
'b'. The levels of 'a' are nested within levels of 'b'. The
issue is that dotplot includes all the levels of
Dear R People:
I have the following montly time series
ya.ts
Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec
2001 3.7 -0.8 0.3 -1.5 -0.2 -0.4 2.5 -1.0 -1.2 -1.2 0.4 -0.5
2002 0.5 0.0 -0.8 -1.0 0.6 0.8 -0.5 -2.4 1.3 1.4 -0.1 0.5
plot(ya.ts)
When the plot is constructed,
Dear R People:
Just in case anyone is interested, here is a particular solution to the
months on the horizontal axis question:
mon1
[1] J F M A M J J A S O N D
mon2 - rep(mon1,2)
mon2
[1] J F M A M J J A S O N D J F M A M J
J
[20] A S O N D
ya.ts
Jan Feb Mar Apr May Jun Jul Aug Sep
Laura Holt lauraholt_983 at hotmail.com writes:
:
: Dear R People:
:
: I have the following montly time series
: ya.ts
: Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec
: 2001 3.7 -0.8 0.3 -1.5 -0.2 -0.4 2.5 -1.0 -1.2 -1.2 0.4 -0.5
: 2002 0.5 0.0 -0.8 -1.0 0.6 0.8 -0.5
HENRIKSON, JEFFREY JEFHEN at SAFECO.com writes:
:
: Hello,
:
: I am having trouble understanding how R is coercing between matrices and
: lists in the following example. I have an aggregate behavior I like:
:
: aggregate(a[,num],by=list(product=a[,product],region=a[,region]),
: sum)
:
: Now
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