Re: [R] R is not a validated software package..

2007-06-08 Thread Sicotte, Hugues Ph.D.
People, don't get angry at the pharma statistician, he is just trying to abide by an FDA requirement that is designed to insure that test perform reliably the same. There is no point in getting into which product is better. As far as the FDA rules are concerned a validated system beats a better

Re: [R] R is not a validated software package..

2007-06-08 Thread Sicotte, Hugues Ph.D.
. .. Which is why I said Should they need to use those results in a report [where] that will matter to the FDA.. (I added the where .. It makes more sense) -Original Message- From: Frank E Harrell Jr [mailto:[EMAIL PROTECTED] Sent: Friday, June 08, 2007 11:08 AM To: Sicotte, Hugues Ph.D

Re: [R] make check problem

2007-05-23 Thread Sicotte, Hugues Ph.D.
It looks like the system does not like that you installed the apps under your user folders. E.g. C:\Documents and Settings\Erin\Local Can you install in C:\Erin\Local -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Erin Hodgess Sent: Wednesday, May 23,

Re: [R] Affymetrix data analysis

2007-02-02 Thread Sicotte, Hugues Ph.D.
: Friday, February 02, 2007 3:05 AM To: Sicotte, Hugues Ph.D. Cc: Tristan Coram; R-help@stat.math.ethz.ch Subject: Re: [R] Affymetrix data analysis On Thu, 1 Feb 2007, Sicotte, Hugues Ph.D. wrote: Tristan, I have a soft spot for problems analyzing microarrays with R.. for the memory issue

Re: [R] Affymetrix data analysis

2007-02-02 Thread Sicotte, Hugues Ph.D.
. -Original Message- From: Prof Brian Ripley [mailto:[EMAIL PROTECTED] Sent: Friday, February 02, 2007 5:37 AM To: Sicotte, Hugues Ph.D. Cc: Tristan Coram; R-help@stat.math.ethz.ch Subject: RE: [R] Affymetrix data analysis On Fri, 2 Feb 2007, Sicotte, Hugues Ph.D. wrote: Of course, you would

Re: [R] Affymetrix data analysis

2007-02-01 Thread Sicotte, Hugues Ph.D.
Tristan, I have a soft spot for problems analyzing microarrays with R.. for the memory issue, there have been previous posts to this list.. But here is the answer I gave a few weeks ago. If you need more memory, you have to move to linux or recompile R for windows yourself.. .. But you'll still

[R] R on Windows Vista

2007-01-16 Thread Sicotte, Hugues Ph.D.
Did anyone try to run R under Window Vista, especially Windows Vista 64bit? Thanks. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and

Re: [R] memory limits in R loading a dataset and using the packagetree

2007-01-05 Thread Sicotte, Hugues Ph.D.
I agree about sampling, but.. You can go a little further with your hardware. The defaults in R is to play nice and limit your allocation to half the available RAM. Make sure you have a lot of disk swap space (at least 1G with 2G of RAM) and you can set your memory limit to 2G for R. See

Re: [R] randomForest and missing data

2007-01-04 Thread Sicotte, Hugues Ph.D.
I don't know about this module, but a general answer is that if you have missing data, it may affect your model. If your data is missing at random, then you might be lucky in your model building. If however your data was not missing at random (e.g. censoring) , you might build a wrong predictor.

Re: [R] Fitting mean and covariance of Multivariate normal with censored data

2006-11-13 Thread Sicotte, Hugues Ph.D.
*sigmaMu[im] } else if (fix mu[im]-3*sigmaMu[im]) { fix- mu[im]-3*sigmaMu[im] } } _ From: Sicotte, Hugues Ph.D

[R] Fitting mean and covariance of Multivariate normal with censored data

2006-11-01 Thread Sicotte, Hugues Ph.D.
Hello, I have been googling for 2 days and I cannot find the answer in previous posts. I have a set of d-dimensional data elements (d=11 .. 14), each data point can be censored at different values both Lower-limit and upper limit. N = 2000 sets of vectors of D=11 data points per vector.