[R] How to do clustering

2007-06-07 Thread ssls sddd
Dear List, I have another question to bother you about how to do clustering. My data consists of 49 columns (49 variables) and 238804 rows. I would like to do hierarchical clustering (unsupervised clustering and PCA). So far I tried pvclust (www.is.titech.ac.jp/~shimo/prog/*pvclust* /) but I

Re: [R] How to do clustering

2007-06-07 Thread Benilton Carvalho
sorry, I hit send before finishing my thoughts... and as for clustering microarray data, you might want to consider the bioconductor mailing list... [EMAIL PROTECTED] b On Jun 7, 2007, at 10:42 PM, ssls sddd wrote: Dear List, I have another question to bother you about how to do

Re: [R] How to do clustering

2007-06-07 Thread Benilton Carvalho
Hi Alex, just in case you're trying to get genotypes from the Affymetrix 500K set, you might want to check the oligo package available on BioConductor. best, b On Jun 7, 2007, at 10:42 PM, ssls sddd wrote: Dear List, I have another question to bother you about how to do clustering. My