[R] Regression slopes

2003-06-06 Thread Martin Biuw
Hi, Sorry if this is an obvious one, but is there a simple way to modify the lm function to test whether a slope coefficient is significantly different from 1 instead of different from 0? Thanks, Martin Martin Biuw SEA MAMMAL RESEARCH UNIT Gatty Marine Laboratory School of Environmental and

RE: [R] estimation stable distribution parameters

2003-06-06 Thread Pikounis, Bill
Dedi, There is a very useful package called stable by Philippe Lambert and Jim Lindsey at http://alpha.luc.ac.be/~jlindsey/rcode.html Look down that page to the Probability functions and generalized regression models for stable distributions identifier. And if you have not read it already, I

Re: [R] Regression slopes

2003-06-06 Thread Prof Brian Ripley
No modification needed. Fit either of lm(y-x ~ x + z) lm(y ~ x + z + offset(x)) and the t-test in the summary will be a test of the coefficient of x being one. You can also use such models to do an anova against a modle with unit coefficient. On Thu, 5 Jun 2003, Martin Biuw wrote: Sorry

Re: [R] Regression slopes

2003-06-06 Thread Sundar Dorai-Raj
Martin Biuw wrote: Hi, Sorry if this is an obvious one, but is there a simple way to modify the lm function to test whether a slope coefficient is significantly different from 1 instead of different from 0? Thanks, There might be an easier way, but the brute force method would be: R

[R] Error when creating layouts with partly filled pages withinlattice

2003-06-06 Thread Hotz, T.
Dear all, Please take my apologies if that has already been asked - at least I couldn't find it in the archives. When trying to specify a layout within library lattice, i.e. using xyplot, I get an error when the prepanel function tries to subscript the automatically generated x.limits. This

[R] ridge regression

2003-06-06 Thread Wegmann (LIST)
Hello R-user I want to compute a multiple regression but I would to include a check for collinearity of the variables. Therefore I would like to use a ridge regression. I tried lm.ridge() but I don't know yet how to get p-values (single Pr() and p of the whole model) out of this model. Can

[R] Max sig figs as well as Min in print?

2003-06-06 Thread Ted Harding
Hi Folks, Consider the following example (artificial, but it illustates the point): r2-sqrt(2) x-2-r2*r2 print(c(pi,sqrt(pi)),digits=5) [1] 3.1416 1.7725 print(c(pi,sqrt(pi),x),digits=5) [1] 3.1416e+00 1.7725e+00 -4.4409e-16 whereas I would prefer [1] 3.1416 1.7725

[R] persp(), par() and axis()

2003-06-06 Thread Timur Elzhov
Dear R experts, On explanation of persp() parameters the last item is: ...: additional graphical parameters (see `par'). However, setting the `tcl' parameter has no any effect. I guess that axes are added to persp() in somewhat freakish way, and have nothing in common with axis() function.

Re: [R] ridge regression

2003-06-06 Thread Frank E Harrell Jr
On Thu, 5 Jun 2003 15:40:52 + Wegmann (LIST) [EMAIL PROTECTED] wrote: Hello R-user I want to compute a multiple regression but I would to include a check for collinearity of the variables. Therefore I would like to use a ridge regression. I tried lm.ridge() but I don't know yet how

RE: box colours in lattice (was RE: [R] Strip location and gridcolourin Lattice)

2003-06-06 Thread Tom Mulholland
Despite my assertion that I had checked all the lattice theme components, I was in error. Having made the appropriate changes in print.trellis and succeded in what I wanted to do, I noticed obvious trellis.par.get calls and followed them up. In the end what I required did not take much at all.

Fwd: Re: [R] legend() with option adj=1

2003-06-06 Thread Anna H. Pryor
Is there a simpler way then the solution to the one that was posted here? I'm not very proficient with legend, and I don't understand this solution. All I have is two or more lines on one plot that I want to put a legend on and I can't figure out how to do it from the examples. Can you give

[R] counting missing values

2003-06-06 Thread vincent . stoliaroff
Hello R lovers I have written a little cute function to count the number of missing value per row in a matrix and return the percentage of missing value it takes a lot of time to run with a 1000 rows matrix I'd like to know if there is a function already implemented to count the number of

Re: Fwd: Re: [R] legend() with option adj=1

2003-06-06 Thread Uwe Ligges
Anna H. Pryor wrote: Is there a simpler way then the solution to the one that was posted here? I'm not very proficient with legend, and I don't understand this solution. All I have is two or more lines on one plot that I want to put a legend on and I can't figure out how to do it from the

Re: [R] counting missing values

2003-06-06 Thread Uwe Ligges
[EMAIL PROTECTED] wrote: Hello R lovers I have written a little cute function to count the number of missing value per row in a matrix and return the percentage of missing value it takes a lot of time to run with a 1000 rows matrix I'd like to know if there is a function already implemented to

Re: [R] counting missing values

2003-06-06 Thread Torsten Hothorn
Hello R lovers I have written a little cute function to count the number of missing value per row in a matrix and return the percentage of missing value R M - matrix(rnorm(25), ncol=5) R diag(M) - NA R M[2,3] - NA R apply(M, 2, function(x) sum(is.na(x)))/ncol(M) [1] 0.2 0.2 0.4 0.2 0.2 the

Re: [R] Logical vectors

2003-06-06 Thread Uwe Ligges
Nolwenn Le Meur wrote: Hi everybody, just a quick question that drives me crazy: Is it possible to join 2 logical vectors ? i.e. x-4 ind - 1:19200 pin - c(0, rep(400, 48) * (1:48)) ind1-((pin[j] + 1) = ind) (ind = pin[j + 2]) ind2-((pin[j+x] + 1) = ind) (ind = pin[j+x + 2]) ind2 and ind1 give

RE: [R] counting missing values

2003-06-06 Thread Hotz, T.
Dear Vincent I'd like to know if there is a function already implemented to count the number of occurence of a given values in a vector Does my.matrix-cbind(c(0,1,NA),c(NA,1,NA)) count.NA-function(the.matrix){ result-t(apply(the.matrix,1,function(x,n){ m-sum(is.na(x)) c(m,m/n)

Re: Fwd: Re: [R] legend() with option adj=1

2003-06-06 Thread Frank E Harrell Jr
On Thu, 5 Jun 2003 07:20:11 -0700 Anna H. Pryor [EMAIL PROTECTED] wrote: Is there a simpler way then the solution to the one that was posted here? I'm not very proficient with legend, and I don't understand this solution. All I have is two or more lines on one plot that I want to put a

[R] lda

2003-06-06 Thread Power, Anne Marie
Hello I have been using r to classify fish into groups using the lda formula and predict(object,)$class. I am having problems finding an output that simultaneously shows me classification function coefficients for predictors and groups (such as is given in spss under classify:linear discriminant

[R] visualize regression plane

2003-06-06 Thread Michele Grassi
Hi, how can i visualize a regression plane in my 3d scatterplot? __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help

Re: [R] coefficient of logistic regression

2003-06-06 Thread John Fox
Dear can y, At 03:04 PM 6/4/2003 +0300, orkun wrote: [previous messages deleted] Dear Mr. Fox thank you very much all. Because of related to your answer. I ask you directly if you don't mind I studied several ways after my email. I wonder whether pgeo-predict.glm(glm.ob,type=terms) gives

[R] dynamics of functions

2003-06-06 Thread Tobias Verbeke
Dear list, I would like to study the dynamics of functions using R (instead of mathematica e.g.), i.e. the behavior of points under iteration of a function. So I tried (in vain) writing a function myfunction - function(f,n,x){...} in order to compute f^{n}(x), f^{n}(x) being the function f

Re: [R] persp(), par() and axis()

2003-06-06 Thread Uwe Ligges
Timur Elzhov wrote: Dear R experts, On explanation of persp() parameters the last item is: ...: additional graphical parameters (see `par'). However, setting the `tcl' parameter has no any effect. I guess that axes are added to persp() in somewhat freakish way, and have nothing in common

Re: [R] gam()

2003-06-06 Thread John Fox
Dear Henric, At 05:01 PM 6/4/2003 +0200, Henric Nilsson wrote: I've now spent a couple of days trying to learn R and, in particular, the gam() function, and I now have a few questions and reflections regarding the latter. Maybe these things are implemented in some way that I'm not yet aware

Re: [R] counting missing values

2003-06-06 Thread Peter Dalgaard BSA
Torsten Hothorn [EMAIL PROTECTED] writes: Hello R lovers I have written a little cute function to count the number of missing value per row in a matrix and return the percentage of missing value R M - matrix(rnorm(25), ncol=5) R diag(M) - NA R M[2,3] - NA R apply(M, 2, function(x)

Re: [R] visualize regression plane

2003-06-06 Thread Uwe Ligges
Michele Grassi wrote: Hi, how can i visualize a regression plane in my 3d scatterplot? If you are using scatterplot3d(), see ?scatterplot3d, in particular its last example, which is explained in the references given on the same help page. Uwe Ligges

Re: [R] Max sig figs as well as Min in print?

2003-06-06 Thread Prof Brian Ripley
On Thu, 5 Jun 2003 [EMAIL PROTECTED] wrote: Hi Folks, Consider the following example (artificial, but it illustates the point): r2-sqrt(2) x-2-r2*r2 print(c(pi,sqrt(pi)),digits=5) [1] 3.1416 1.7725 print(c(pi,sqrt(pi),x),digits=5) [1] 3.1416e+00 1.7725e+00

[R] dynamics of functions

2003-06-06 Thread Tobias Verbeke
Dear list, I would like to study the dynamics of functions using R (instead of mathematica e.g.), i.e. the behavior of points under iteration of a function. So I tried (in vain) writing a function myfunction - function(f,n,x){...} in order to compute f^{n}(x), f^{n}(x) being the function f

RE: [R] dynamics of functions

2003-06-06 Thread Hotz, T.
Dear Tobias, I would like to study the dynamics of functions using R (instead of mathematica e.g.), i.e. the behavior of points under iteration of a function. So I tried (in vain) writing a function myfunction - function(f,n,x){...} in order to compute f^{n}(x), f^{n}(x) being the

Re: [R] Logistic regression problem: propensity score matching

2003-06-06 Thread John Fox
Dear Paul, At 08:41 PM 6/4/2003 +0100, Paul wrote: Thanks for your reply. I am using logistic regression because my response variable is categorical - and this seems to be recommended in the literature (by Heckman, Smith and others). I think that Prof. Ripley's point here is that although one

Re: [R] dynamics of functions

2003-06-06 Thread Barry Rowlingson
Hotz, T. wrote: What about the following function? iterate-function(f,n,x){ if(n==0) return(x) y-x for(i in 1:n)y-f(y) y } iterate(sqrt,3,256) Or the following: iterFun - function(f,n,x,...){ if(n==0){return(x)} for(i in 1:n){ x-f(x,...) } return(x) } If you

Re: [R] counting missing values

2003-06-06 Thread Thomas Lumley
On Thu, 5 Jun 2003, Uwe Ligges wrote: [EMAIL PROTECTED] wrote: Hello R lovers I have written a little cute function to count the number of missing value per row in a matrix and return the percentage of missing value it takes a lot of time to run with a 1000 rows matrix I'd like to

Re: [R] dynamics of functions

2003-06-06 Thread Tobias Verbeke
Dear Thomas, What about the following function? iterate-function(f,n,x){ if(n==0) return(x) y-x for(i in 1:n)y-f(y) y } iterate(sqrt,3,256) Thank you very much, this certainly helps. I'm still curious, though, to know how to write the expression of my function immediately as

[R] na.action in model.frame

2003-06-06 Thread Ravi Varadhan
Dear Group: I am trying to create a model frame from a formula for the model as follows: formula - y ~ x1 + x2 + x3 X - model.frame(form=formula,data=mydata) I have some missing values in some the variables, but I want them to be included in my model frame and to be indicated as NA. Is there

Re: [R] dynamics of functions

2003-06-06 Thread Prof Brian Ripley
On Thu, 5 Jun 2003, Tobias Verbeke wrote: ... What about the following function? iterate-function(f,n,x){ if(n==0) return(x) y-x for(i in 1:n)y-f(y) y } iterate(sqrt,3,256) Thank you very much, this certainly helps. I'm still curious, though, to know how to write

Re: [R] dynamics of functions

2003-06-06 Thread Ravi Varadhan
Here is a recursive function. iterate - function(f, n, x){ if(n==0) return(x) iterate(f, n-1, f(x)) } iterate(function(x) 1/(1+x), 10, 1) Best, Ravi. - Original Message - From: Tobias Verbeke [EMAIL PROTECTED] Date: Thursday, June 5, 2003 12:04 pm Subject: Re: [R] dynamics of

Re: [R] dynamics of functions

2003-06-06 Thread Thomas Lumley
On Thu, 5 Jun 2003, Tobias Verbeke wrote: Dear Thomas, What about the following function? iterate-function(f,n,x){ if(n==0) return(x) y-x for(i in 1:n)y-f(y) y } iterate(sqrt,3,256) Thank you very much, this certainly helps. I'm still curious, though, to know how to

[R] (no subject)

2003-06-06 Thread Fohr, Marc [AM]
Hello, I am interested in R as an alternative for a statistical tool at our firm. I do know RATS an SPSS but not S+. As I read that R is close to S+, I would like to know if you could recommend me any books as an introduction to S+ or R. Best regards Marc

[R] Survival analysis and generalized gamma?

2003-06-06 Thread James D Thomas
Is there an easy way to integrate the generalized gamma distribution into the current R survival package? --james __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help

Re: [R] gam()

2003-06-06 Thread Henric Nilsson
At 11:12 2003-06-05 -0400, John Fox wrote: 2. John Fox has modified anova.glm() into anova.gam() (http://www.socsci.mcmaster.ca/jfox/Books/Companion/nonparametric-regression.txt) for comparison of two or more fitted models based on the difference between residual deviances. Indiscriminate use

[R] kmeans (again)

2003-06-06 Thread Luis Torgo
Regarding a previous question concerning the kmeans function I've tried the same example and I also get a strange result (at least according to what is said in the help of the function kmeans). Apparently, the function is disregarding the initial cluster centers one gives it. According to the

Re: R References {was: [R] (no subject)}

2003-06-06 Thread Spencer Graves
Apart from the wealth of material on http://www.r-project.org/;, my favorite book on R is Modern Applied Statistics with S, 4th ed., by Venables and Ripley. hope this helps. spencer graves Fohr, Marc [AM] wrote: Hello, I am interested in R as an alternative for a statistical tool at our

RE: [R] Introductory Resources

2003-06-06 Thread Marc Schwartz
-Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Fohr, Marc [AM] Sent: Thursday, June 05, 2003 11:46 AM To: '[EMAIL PROTECTED]' Subject: [R] (no subject) Hello, I am interested in R as an alternative for a statistical tool at our firm. I do know RATS

Re: [R] scales in xyplot doesn't seem to work for x axis

2003-06-06 Thread Deepayan Sarkar
On Thursday 05 June 2003 06:41, Ernesto Jardim wrote: Hi I'm doing a xyplot and I wand to reduce the number of tick marks in the x axis. My x axis are month and I want to reduce the 12 tick marks to 4. I used the scales argument but it doesn't seem to work, althougth it works on y axis if I

Re: [R] Error when creating layouts with partly filled pages withinlattice

2003-06-06 Thread Deepayan Sarkar
Could you try with the latest lattice (0.7-13) ? I don't see an error with it. It's not immediately obvious to me where the problem could have come from, but there were a bunch of similar problems fixed recently. On Thursday 05 June 2003 08:21, Hotz, T. wrote: Dear all, Please take my

[R] Re: Approved

2003-06-06 Thread León Villán
I will appreciate you explain me the reason for sending me this e-mail, and the purpose of the attached file (aplication.pi). Best regards Leon Villan At 11:11 a.m. 05/06/2003 +0200, you wrote: Please see the attached file. __ [EMAIL PROTECTED] mailing

[R] question about POSIXct conversion

2003-06-06 Thread Kosenkov Kirill
Hello! I am trying to compute minimal time on some data like this: mt-tapply(mrsh$time1,list(mrsh$var1,mrsh$var2),min): a b 145 1054800600 1054789800 340 1054804500 1054794600 349 1054820400 1054792800 55

Re: [R] dynamics of functions

2003-06-06 Thread Tobias Verbeke
Thanks to you all for the clarifications. I will work on my spacebar usage ;-) Regards, Tobias __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help

Re: [R] question about POSIXct conversion

2003-06-06 Thread Prof Brian Ripley
character is a mode POSIXct is a class, but you want c(POSIXt, POSIXct) Try mt - structure(mt, class=c(POSIXt, POSIXct)) or mt + ISOdatetime(1970,1,1,0,0,0) or several other such tricks. On Thu, 5 Jun 2003, Kosenkov Kirill wrote: Hello! I am trying to compute minimal time on some data

Re: R References {was: [R] (no subject)}

2003-06-06 Thread Roger D. Peng
You might also consider S Programming, by Venables Ripley. -roger Spencer Graves wrote: Apart from the wealth of material on http://www.r-project.org/;, my favorite book on R is Modern Applied Statistics with S, 4th ed., by Venables and Ripley. hope this helps. spencer graves

Re: [R] question about POSIXct conversion

2003-06-06 Thread Kosenkov Kirill
Thanks for reply, but when i am trying to mt - structure(mt, class=c(POSIXt, POSIXct)) or mt + ISOdatetime(1970,1,1,0,0,0) it seems that i loosing structre of matrix: str(structure(mt, class=c(POSIXt, POSIXct))) `POSIXct', format: chr [1:44] 2003-06-05 12:10:00... instead of: num [1:11,

[R] partial residuals in plot.gam()

2003-06-06 Thread Henric Nilsson
All, Sorry for bombarding you with GAM related questions, but... I know a partial residual option in plot.gam() is on Simon Wood's todo list, but since I'm in the midst of a project and not yet having acquired sufficient R knowledge to code something usable myself I'll have to put my trust in

[R] dev.copy2eps: Why did the colors come into my postscript output?

2003-06-06 Thread Paul E Johnson
On a RedHat 7.3 system with R-1.6.1, I did this x11(width=3.5,height=4,colortype=gray) Then plotted (with matplot) a nice looking no-color graph on the screen, then I did this: dev.copy2eps(file=test.eps,height=4,width=3.5) I was surprised that the output in the eps file included the

Re: [R] dev.copy2eps: Why did the colors come into my postscriptoutput?

2003-06-06 Thread Prof Brian Ripley
On Thu, 5 Jun 2003, Paul E Johnson wrote: On a RedHat 7.3 system with R-1.6.1, I did this x11(width=3.5,height=4,colortype=gray) Then plotted (with matplot) a nice looking no-color graph on the screen, then I did this: dev.copy2eps(file=test.eps,height=4,width=3.5) I was

[R] converting by to a data.frame?

2003-06-06 Thread Spencer Graves
Dear R-Help: I want to (a) subset a data.frame by several columns, (b) fit a model to each subset, and (c) store a vector of results from the fit in the columns of a data.frame. In the past, I've used for loops do do this. Is there a way to use by? Consider the following example:

Re: [R] Survival analysis and generalized gamma?

2003-06-06 Thread Thomas Lumley
On Thu, 5 Jun 2003, James D Thomas wrote: Is there an easy way to integrate the generalized gamma distribution into the current R survival package? I'm not entirely sure what the generalized gamma distribution is, but it is fairly easy to add to survreg() other parametric models where

Re: [R] converting by to a data.frame?

2003-06-06 Thread Thomas Lumley
On Thu, 5 Jun 2003, Spencer Graves wrote: Dear R-Help: I want to (a) subset a data.frame by several columns, (b) fit a model to each subset, and (c) store a vector of results from the fit in the columns of a data.frame. In the past, I've used for loops do do this. Is there a way

Re: [R] converting by to a data.frame?

2003-06-06 Thread Spencer Graves
Hi, Thomas, et al.: Thanks for the reply. Unfortunately, do.call strips off the subset identifiers, which I want to use for further modeling: do.call(rbind, byFits) (Intercept) x [1,] 0.333 -1.517960e-016 [2,] 0.667 3.282015e-016 The following does what I want

Re: [R] converting by to a data.frame?

2003-06-06 Thread Don MacQueen
Since I don't have your by.df to test with I may not have it exactly right, but something along these lines should work: byFits - lapply(split(by.df,paste(by.df$A,by.df$B)), FUN=function(data.) { tmp - coef(lm(y~x,data.))

Re: [R] Logistic regression problem: propensity score matching

2003-06-06 Thread Paul
Thank you all. I made a pretty basic error in using multinom rather than glm family=binomial which needed rapid correction. I have now rewritten the relevant part using glm. After importing I convert all categorical variables into factors londonpsm - sqlFetch(channel,

RE: [R] ridge regression

2003-06-06 Thread Liaw, Andy
Hi Frank, From: Frank E Harrell Jr [mailto:[EMAIL PROTECTED] [snip] The anova method for ols fits 'works' when you penalize the model but there is some controversy over whether we should be testing biased coefficients. Some believe that hypothesis tests should be done using the

RE: [R] na.action in model.frame

2003-06-06 Thread Liaw, Andy
Try: X - model.frame(form=formula, data=mydata, na.action=na.pass) Andy -Original Message- From: Ravi Varadhan [mailto:[EMAIL PROTECTED] Sent: Thursday, June 05, 2003 12:02 PM To: [EMAIL PROTECTED] Subject: [R] na.action in model.frame Dear Group: I am trying to create a

Re: [R] Query about C Function Interface

2003-06-06 Thread Prof Brian Ripley
You are trying to load woa.obj, and you are on Windows which should be looking for a .dll and the error message says woa.so. You say you keep your .exe in the rw1070 directory. You are rather confused! dyn.load on Windows loads a DLL file from the current working directory, *as its help says*.

Re: [R] Survival analysis and generalized gamma?

2003-06-06 Thread Jim Lindsey
Is there an easy way to integrate the generalized gamma distribution into the current R survival package? This distribution is available in my gnlr3 function in my gnlm library. It handles left-, right-, and interval censoring, with linear and nonlinear regression on all three parameters.

[R] beginner's question: Graphical presentation of t test

2003-06-06 Thread peter robinson
Hi, Is there any way to use R to present t test results for three groups of experiments, each of which involves several parallel experiment series with groups of control vs treated. I would like to present the average fold change of the experimental parameter (concentration of enzymes) as bars

Re: [R] Problerm building R-1.7.0 on OpenBSD3.2/sparc64

2003-06-06 Thread Prof Brian Ripley
Looks like that OS wants all symbols resolved: those are all variables exported by R.bin. 1) See if there is a ld flag to allow unresolved symbols. 2) (something of a kludge) configure with --enable-R-shared and rebuild (from scratch), as this will link against the libR.so. Whether that works

[R] load workspace

2003-06-06 Thread Michele Grassi
Hi, When i load my workspace, i visualize my object with the ls()function. First problem is that the saved graph is open like a list instead of an image!What is wrong? Second problem is about scatterplot graph: how can i identify a specific point? Thanks. Michele.

Re: [R] confusedness about saved graph; was: load workspace

2003-06-06 Thread Uwe Ligges
Michele Grassi wrote: Hi, When i load my workspace, i visualize my object with the ls()function. You list the available objects in your Workspace, I guess? I don't know of the feature to visualize objects with ls(). First problem is that the saved graph is open like a list instead of an

Re: [R] partial residuals in plot.gam()

2003-06-06 Thread Simon Wood
I know a partial residual option in plot.gam() is on Simon Wood's todo list, but since I'm in the midst of a project and not yet having acquired sufficient R knowledge to code something usable myself I'll have to put my trust in you. Anybody got some code lying around for doing this? Or if

[R] writing comments within a function

2003-06-06 Thread vincent . stoliaroff
Hi R lovers! I would like to know how you can write comments inside the code of a function is it latex style % ? or any other language style? thanks a lot * Ce message et toutes les pieces jointes (ci-apres le message)

[R] Kmeans again

2003-06-06 Thread Luis Miguel Almeida da Silva
Dear helpers I'm sorry to insist but I still think there is something wrong with the function kmeans. For instance, let's try the same small example: dados-matrix(c(-1,0,2,2.5,7,9,0,3,0,6,1,4),6,2) I will choose observations 3 and 4 for initial centers and just one iteration. The results

Re: [R] ridge regression

2003-06-06 Thread Frank E Harrell Jr
On Thu, 05 Jun 2003 21:50:13 -0400 Liaw, Andy [EMAIL PROTECTED] wrote: Hi Frank, From: Frank E Harrell Jr [mailto:[EMAIL PROTECTED] [snip] The anova method for ols fits 'works' when you penalize the model but there is some controversy over whether we should be testing biased

Re: [R] scales in xyplot doesn't seem to work for x axis

2003-06-06 Thread Ernesto Jardim
On Thu, 2003-06-05 at 18:26, Deepayan Sarkar wrote: On Thursday 05 June 2003 06:41, Ernesto Jardim wrote: Hi I'm doing a xyplot and I wand to reduce the number of tick marks in the x axis. My x axis are month and I want to reduce the 12 tick marks to 4. I used the scales argument but it

[R] Ein Virus in der E-MAIL von r-help @ hypatia . math . ethz . chgefunden . ( ddaah143@deutschepost.de )

2003-06-06 Thread fwadmin2
In der Mailnachricht wurde vom Virenscanner ein VIRUS gefunden: Von: [EMAIL PROTECTED] Gesendet: Fri, 6 Jun 2003 12:44:30 +0200 Betrefd: Re: Application Daher konnte diese Mail nicht an den/die Empfaenger weitergeleitet werden. [EMAIL PROTECTED]

Re: [R] writing comments within a function

2003-06-06 Thread Ott Toomet
| From: [EMAIL PROTECTED] | Date: Fri, 6 Jun 2003 11:57:32 +0200 Hallo, | Hi R lovers! | | I would like to know how you can write comments inside the code of a | function | | is it latex style | % ? | or any other language style? It's #, otherwise like tex. The same character is

Re: [R] Moran's index

2003-06-06 Thread Stephane Dray
Hi, I am looking for some code for Moran's I. Has anyone previously done this? I have been unable to find it in the search engines. James Computations and tests for Moran's I and Geray's c are available in the spdep package. -- Stéphane DRAY

Re: [R] Query about C Function Interface

2003-06-06 Thread Duncan Murdoch
On Thu, 05 Jun 2003 23:50:07 -0500, you wrote: if(!is.loaded(C.symbol(woa))) dyn.load(woa.obj) # woa is my file name in C Error message coming like this: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library C:/Program Files/R/rw1070/woa.so:

RE: [R] writing comments within a function

2003-06-06 Thread vincent . stoliaroff
Thanks you everybody for all your answers |-+ | | [EMAIL PROTECTED]| | | .uk | | || | | 06/06/03 01:32 PM| | ||

RE: [R] R help: Correlograms

2003-06-06 Thread Hotz, T.
I have time series and need to draw simple and partial correlograms with associated Q-statistics (the same as in EViews). Can I do it in R? Thanks library(ts) contains functions acf and pacf which come with corresponding plot methods. See their help pages for details. I don't know anything

[R] MCD distance

2003-06-06 Thread osama
Hi all; I would like to compare robust distance measures,e.g. MVE, MCD, BACON, as measures of leverage and to detect outliers in X-space . I could not find it in LQS or MASS backages. Please help Osama Hussien [[alternate HTML version deleted]]

[R] Contour plot question

2003-06-06 Thread Paul, David A
In a contour plot having numeric values displayed next to the contours, is it possible to modify these numeric values so that they are bolded, enlarged, and/or placed differently? Much thanks in advance, David Paul, Ph.D. Battelle Memorial Institute 614.424.3176

Re: [R] converting by to a data.frame?

2003-06-06 Thread Sundar Dorai-Raj
Spencer, Would sapply be better here? R by.df - data.frame(A=rep(c(A1, A2), each=3), R+ B=rep(c(B1, B2), each=3), R+ x=1:6, y=rep(0:1, length=6)) R t(sapply(split(by.df, do.call(paste, c(by.df[, 1:2], sep = :))), R+ function(x) coef(lm(y ~ x, data

Re: [R] Contour plot question

2003-06-06 Thread Duncan Murdoch
On Fri, 06 Jun 2003 09:38:40 -0400, you wrote in message [EMAIL PROTECTED]: In a contour plot having numeric values displayed next to the contours, is it possible to modify these numeric values so that they are bolded, enlarged, and/or placed differently? See the ?contour.default help: vfont

[R] understanding LDA: normalization of the eigenvectors

2003-06-06 Thread Christoph Lehmann
Hi dear R-users I try to reproduce the steps included in a LDA. In my textbook (Bortz) it says, that the matrix with the eigenvectors V usually are not normalized to the length of 1, but in the way that the following holds (SPSS does the same thing): t(Vstar)%*%Derror%*%Vstar = I where

Re: [R] Contour plot question

2003-06-06 Thread Uwe Ligges
Duncan Murdoch wrote: On Fri, 06 Jun 2003 09:38:40 -0400, you wrote in message [EMAIL PROTECTED]: In a contour plot having numeric values displayed next to the contours, is it possible to modify these numeric values so that they are bolded, enlarged, and/or placed differently? See the

RE: [R] R help: Correlograms

2003-06-06 Thread Pfaff, Bernhard
Hello, I have time series and need to draw simple and partial correlograms with associated Q-statistics (the same as in EViews). Can I do it in R? Thanks Hello Shutnik, see ?Box.test in the ts-package for Q-statistics. To my knowledge a plot function as in EViews (left-hand panel are ACFs

[R] little manipulation on data frame

2003-06-06 Thread N Dey
Dear all, I have data like 3 coulmns and many rows. Each entry is less than 10. Example x y z 1 5 3 2 2 3 7 8 3 8 9 5 4 5 4 6 -- --- I have to sum

RE: [R] Introductory Resources

2003-06-06 Thread RBaskin
I am interested in R as an alternative for a statistical tool at our firm. Ditto... I have recently moved to this agency from a company where I had access to Splus. There is also a coworker here who had used Splus at a previous employer. We both would like some access to the S language. We

Re: [R] little manipulation on data frame

2003-06-06 Thread Spencer Graves
I don't completely understand what you want, but might the following help? cumsum(1:11) [1] 1 3 6 10 15 21 28 36 45 55 66 which(cumsum(1:11)9) [1] 4 5 6 7 8 9 10 11 which(cumsum(1:11)9)[1] [1] 4 hth. spencer graves N Dey wrote: Dear all, I have data like 3 coulmns and many rows.

[R] layout problem

2003-06-06 Thread Matt Pocernich
Hello, I have a question about using the layout command within a function. I've written function that uses layout to create a figure from 2 plots. This works fine to create a figure. When I use par(mfrow = c(2,2)) to create multiple plots, it seems that the layout command resets the mfrow

Re: [R] Kmeans again

2003-06-06 Thread Douglas Grove
I'm sorry to insist but I still think there is something wrong with the function kmeans. For instance, let's try the same small example: dados-matrix(c(-1,0,2,2.5,7,9,0,3,0,6,1,4),6,2) I will choose observations 3 and 4 for initial centers and just one iteration. The results are

RE: [R] layout problem

2003-06-06 Thread Hotz, T.
I have a question about using the layout command within a function. I've written function that uses layout to create a figure from 2 plots. This works fine to create a figure. When I use par(mfrow = c(2,2)) to create multiple plots, it seems that the layout command resets the mfrow

Re: [R] Introductory Resources

2003-06-06 Thread Duncan Murdoch
On Fri, 6 Jun 2003 12:04:47 -0400 , you wrote in message [EMAIL PROTECTED]: 1) I want a test suite for R. I noted in the messages (Date: Mon Feb 24 2003 - 22:18:03 EST) that Prof Ripley wrote Well, R itself has lots of tests in its test suite (see directory tests in the sources) packages... but

[R] sas vs. r

2003-06-06 Thread wensui liu
I like R more than SAS. My job is doing research on clinical trial. But I was told that FDA only accepts the result from SAS. Is that true? TOO BAD. [[alternate HTML version deleted]] __ [EMAIL PROTECTED] mailing list

RE: [R] Introductory Resources

2003-06-06 Thread RBaskin
Thank you for your detailed response. R is more responsive to bug reports. and blithering from frustrated code converters :) boot(vname, median, na.rm=T) should work, ... agreed but myfunc - function(x, str) median(x, na.rm=str) boot(vname, myfunc, str=T) would not. agreed What I

RE: [R] sas vs. r

2003-06-06 Thread Marc Schwartz
-Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of wensui liu Sent: Friday, June 06, 2003 1:16 PM To: [EMAIL PROTECTED] Subject: [R] sas vs. r I like R more than SAS. My job is doing research on clinical trial. But I was told that FDA only accepts the

Re: [R] sas vs. r

2003-06-06 Thread Spencer Graves
Please check http://www.r-project.org/; - search - R site search. My search just now for R vs. SAS for FDA produced 14 matches. My bottom line from reading comments on this issue is that it is like the comment 20 years ago that, Nobody in management ever got fired for buying IBM. The

Re: [R] sas vs. r

2003-06-06 Thread Thomas Lumley
On Fri, 6 Jun 2003, wensui liu wrote: I like R more than SAS. My job is doing research on clinical trial. But I was told that FDA only accepts the result from SAS. Is that true? TOO BAD. No, it isn't true. The FDA does not approve or certify statistical software. Its main regulation

Re: [R] sas vs. r

2003-06-06 Thread A.J. Rossini
wensui liu [EMAIL PROTECTED] writes: I like R more than SAS. My job is doing research on clinical trial. But I was told that FDA only accepts the result from SAS. Is that true? TOO BAD. No. But it's not that simple. See previous postings (within the last 2 months) on validation and FDA.

[R] losing color in panal.xyplot (lattice)

2003-06-06 Thread Frank Mattes
Dear R help-list reader, I have a grouping variable C-c(1,2,3) which gives me the plot symbols in a xyplot (lattice library) in three different colors, according the group variable. xyplot(A ~ B), group=factor(C)) if I now apply the panel.xyplot / panel.loess all the colors are changing back

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