in match.fun(FUN) : Object threshold not found
thanks for help
cheers
chris
Perhaps the missing first 'h' in the 'treshold' function definition
would be the problem?
Alternativey, you need to use:
sapply(mylist[, , 3], treshold)
HTH,
Marc Schwartz
... :-)
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settings
par(old.par)
See ?par for more information on the above graphic parameters.
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of a single vector with repeating values (such as Carlos'
example) and will generate an error message if a single vector is
passed.
In that scenario, as many folks have already recommended, the
combination of table() and prop.table() would be preferred.
HTH,
Marc Schwartz
On Sun, 2004-02-29 at 18:27, Gabor Grothendieck wrote:
That's true; however,
CrossTable(x,x)
does give the desired counts and proportions in the margin
line at the bottom. See the row labelled Column Total in
the following example based on Carlos' vector:
sex-c(1,2,2,1,1,2,2,2)
On Sun, 2004-02-29 at 19:26, Gabor Grothendieck wrote:
I agree its overkill but prop.table generalizes to mulitple
dimensions, in which case it becomes comparable to CrossTable,
so I thought it was worth mentioning.
By the way, as the author of CrossTable, perhaps you
might might consider
,
Ryszard
Please see R-FAQ 7.7:
Why do my matrices lose dimensions?
HTH,
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to define
your page size.
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3 03 2
See ?aggregate for more information. By default, aggregate() names the
function derived column as 'x'. You can of course rename it as you need.
HTH,
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---
Date: Wed, 03 Mar 2004 21:46:27 -0600
From: Marc Schwartz [EMAIL PROTECTED]
To: Greg Blevins [EMAIL PROTECTED]
Cc: R-Help [EMAIL PROTECTED]
Subject: Re: [R] A file manipulation question
[...]
aggregate(df$Contract, list(ID = df$ID), max)
ID x
1 01 1
2 02 3
3 03
!
Any help appreciated.
Cheers,
Sam.
See ?par specifically for par(ask), which enables you to do exactly
what you wish.
HTH,
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PLEASE do read
, SPP3,.)
#
Andy,
Your boxplots are at (1:3 - 0.2) and (1:3 + 0.2). Thus, the centers of
the pairs are at 1:3.
You can use:
mtext(side = 1, text = c(SPP1, SPP2, SPP3), at = 1:3, line = 2)
To place the pair labels in the centers along the x axis.
HTH,
Marc
6 6 6 7 7 7 7 7 7 7 7 7 7 8
[81] 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9
[97] 9 9 9 1
HTH,
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:
help.search(replace)
;-)
See ?replace for more info and there is also the grep family for complex
search and replace operations based on regex. See ?grep.
HTH,
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information.
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with the help for par.
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the intervals to the right side of the range.
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,] 4 4
[4,] 5 5
See ?complete.cases for more information.
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.
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the 'at' values to pair these up with the above
boxplot(x[, c(2, 4, 6, 8, 10)], at = 1:5 + 0.2,
boxwex = 0.2, add = TRUE, xaxt = n)
Not sure if that is what you are looking for, but it might provide some
food for thought.
HTH,
Marc Schwartz
region is square
par(usr)
[1] 0 21 0 21
Here is a PS plot generated with:
postscript(width = 5, height = 5)
plot(x, y, xlim = lims, ylim = lims, xaxs = i, yaxs = i)
abline(0, 1)
dev.off()
http://www.MedAnalytics.com/Rplots.ps
HTH,
Marc Schwartz
On Fri, 2004-03-19 at 09:29, Marc Schwartz wrote:
On Fri, 2004-03-19 at 09:06, Robin Hankin wrote:
Hi everyone
I want a square scatterplot with abline(0,1) going exactly through the
SW and NE corners. By square I mean that the plotting region is
exactly square, and that the axis
,
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?apply for more information
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of the debugging tools
working with ESS.
See section 6 (R and Emacs) in the main R FAQ:
http://cran.r-project.org/doc/FAQ/R-FAQ.html#R%20and%20Emacs
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truly need to resort to looping--I
think so? Any other clever thoughts?
Thanks,
Sean
See the running() function in the 'gregmisc' package on CRAN or the
filter() function in package 'ts', which is part of the standard R
installation.
HTH,
Marc Schwartz
)
par(new = TRUE)
par(fig=c(0.7, 1, 0, 0.5))
plot(x,y)
That should get you what you want.
Also, take a look at the layout() function (?layout), which enables you
to define sections within the overall plotting area as do par(mfcol)
and par(mfrow).
HTH,
Marc Schwartz
(Probability Distributions) in An
Introduction to R.
Also help.search(distribution) will provide a keyword listing for your
installed packages (which of course would not include add-on packages
from CRAN, BioC, etc.)
HTH,
Marc Schwartz
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Marc Schwartz
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are
likely to be situationally specific and not an all or nothing gain.
HTH,
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On Tue, 2004-03-23 at 08:09, David James wrote:
Marc,
I agree with you 100% -- they've done a superb job! Unfortunately
you sent the email to the wrong David:-)
David,
My e-mail went openly to r-help, which is why you got it.
It was a public congratulations.
:-)
Best regards,
Marc
Hall 1993 paperback edition, as opposed to the
CRC Press hardcover edition.
HTH,
Marc Schwartz
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plot.
You might want to look at ?par for examples of how to use the sequence
of saving and restoring the non-readonly parameters. It is typically
done when you will be modifying certain plot parameters and wish to
restore them to a default state later when you are done.
HTH,
Marc Schwartz
'.)
HTH,
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On Thu, 2004-03-25 at 09:59, Prof Brian Ripley wrote:
On Thu, 25 Mar 2004, Marc Schwartz wrote:
So the help _should_ read:
bg: the background color for the legend box. (Note that this is
only used if 'bty != n'.)
and does so read in 1.9.0 beta: I fixed this on Jan 2
be:
x - c(1.1 * 1:4, 25 * 1:5) / 50e+03
y - c(0.15 * 1:4, 0.6 + 0.05 * 1:5)
old.par - par(no.readonly=TRUE)
xlim - range(x)
ylim - c(0, 1)
plot(x, y, type = l, log = x, xlim = xlim, ylim = ylim)
axis(3, labels = axTicks(3) * 4e06)
par(old.par)
Does that get you what you want?
HTH,
Marc Schwartz
On Thu, 2004-03-25 at 17:42, Itay Furman wrote:
Thanks, Marc, for your reply.
Happy to help.
I didn't explain myself well, but thanks to you I think I could
phrase my question better.
I want to be able to compute new tick-positions for the top
X-axis.
Why new ticks positions?
See in
. In that case, it is creating a scatterplot with marginal
histograms.
HTH,
Marc Schwartz
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, that premise would need to be validated.
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)
...
Some of the packages are released under other licenses or have
restrictions on commercial use or distribution. Read each one carefully.
HTH,
Marc Schwartz
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information.
HTH,
Marc Schwartz
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arizona state NA 0 NA
HTH,
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On Sat, 2005-10-15 at 11:43 -0500, Marc Schwartz wrote:
There may be an easier way, but here is one possible approach:
First, use scan to read in the data. Set the 'what' argument to a list
of atomic data types, based upon your specs above. Also, set the
'na.names' argument to '.'.
Ack
,
Marc Schwartz
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result. Thus the
use of isTRUE() helps here:
isTRUE(all.equal(x, y))
[1] FALSE
You should also read R FAQ 7.31 Why doesn't R think these numbers are
equal?.
HTH,
Marc Schwartz
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Plate and Richard Heiberger.
HTH,
Marc Schwartz
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program to do so for other graphics:
convert test.pdf -resize 300x300 out.pdf
then out.pdf looks rather poor (pixelly). The original image is too big.
ANy ideas?
Thanks a lot,Peter
Am Mo, 24.10.2005, 22:53, schrieb Marc Schwartz (via MN):
On Mon, 2005-10-24 at 22:32 +0200, Dr. med. Peter
(ABM , AFCE , AG , ATG )
a
[1] ABM AFCE AGATG
a.new - sub(' +$', '', a)
a.new
[1] ABM AFCE AG ATG
Also, if this data was generated using read.table() or one of it's
variants, note the use of the 'strip.white' argument in ?read.table.
HTH,
Marc Schwartz
. In general, 3d
barplots are a bad way to present data (almost as bad as 3d exploding
pie charts...)
More information on 'rgl' is here:
http://rgl.neoscientists.org
and is available via CRAN.
HTH,
Marc Schwartz
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for the
rotated labels.
4. See R FAQ 7.27 How can I create rotated axis labels? which is a
method to enable axis labels rotated to something between horizontal and
vertical (ie. 45 degrees).
HTH,
Marc Schwartz
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?postscript the 'append' argument is _disregarded_. Please review
the help page more carefully.
If you want more than one plot per PS file, do not use dev.off() between
plots:
postscript(file=test_graph.eps, onefile = TRUE)
plot(1:5)
barplot(1:5)
dev.off()
HTH,
Marc Schwartz
On Fri, 2005-10-28 at 14:52 +0200, Florence Combes wrote:
Sorry I put there the ref. :
I am using R Version 2.0.1 on a Debian.
Florence.
Definitely time to upgrade, as you are several versions behind. The
current version is 2.2.0.
Marc
__
On Fri, 2005-10-28 at 08:01 -0500, Marc Schwartz wrote:
On Fri, 2005-10-28 at 14:48 +0200, Florence Combes wrote:
Dear all,
I would like to be able to store multiple graphs in one ps or pdf file, but
I cannot achieve this only if I don't shut the postscript device between
the graphs
takes about 650 Mb.
HTH,
Marc Schwartz
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this:
cor2 - 0.74
plot(1:5)
title(bquote(rho == .(cor2)))
See ?plotmath and ?bquote for more information, noting the use of
the .(Variable) syntax for variable substitution.
HTH,
Marc Schwartz
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https
it today]
Please use an informative subject.
What's wrong with just adding the two vectors, if the rules are as
simple as you indicate?
A
[1] 0 1 0 0 1 1 0 0
B
[1] 0 0 0 1 0 1 1 1
C - A + B
C
[1] 0 1 0 1 1 2 1 1
HTH,
Marc Schwartz
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On Sat, 2005-11-05 at 15:15 +, Ted Harding wrote:
On 05-Nov-05 Marc Schwartz wrote:
On Tue, 2005-11-01 at 12:39 +0200, Erez wrote:
Hi
I need an advise if any one can help me.
i have mass of data in 2 array A and B:
A = 0 1 0 0 1 1 0 0
B = 0 0 0 1 0 1 1 1
and i have 3 rules
On Sat, 2005-11-05 at 17:52 +0100, Martin Maechler wrote:
Marc == Marc Schwartz [EMAIL PROTECTED]
on Sat, 05 Nov 2005 09:20:40 -0600 writes:
Marc On Sat, 2005-11-05 at 15:15 +, Ted Harding wrote:
On 05-Nov-05 Marc Schwartz wrote: On Tue, 2005-11-01 at
12:39 +0200
(colSums(failcondtab)))]
31 12 41 17 14 13 11 30 6 39 26 15
gave up 8 1 2 0 1 1 1 0 0 0 0 0
wrong4 7 2 4 3 3 3 3 3 1 1 1
See ?order, ?rev and ?colSums.
HTH,
Marc Schwartz
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https
On Sat, 2005-11-05 at 11:44 -0600, Marc Schwartz wrote:
On Sat, 2005-11-05 at 18:04 +0100, Claus Atzenbeck wrote:
Hi,
I have a data frame named questions that I use to get a subset and
then a table:
failcondonly - subset(questions, errorreason==condition)
failcondtab - table
to remove any .RData files that are getting loaded on
startup and recreate your package(s) in a clean R session before further
attempts at installation.
HTH,
Marc Schwartz
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and/or where I only want a subset of the columns.
HTH,
Marc Schwartz
On Sun, 2005-11-06 at 17:44 +, Adaikalavan Ramasamy wrote:
Check out the R Data Import/Export manual, especially
http://cran.r-project.org/doc/manuals/R-data.html#DBI-_002f-RMySQL
and the RMySQL package.
On Sun, 2005-11-06
, which I just noted that Gabor has pointed out in his
reply.
HTH,
Marc Schwartz
On Sun, 2005-11-06 at 17:48 +, Adaikalavan Ramasamy wrote:
I do not understand what your question is. Can you clarify with an
example or analogies to other programming language.
my.fun - function(x, y=1){ x
axis at data values
axis(1, at = data$pos)
Does that get you closer to what you intended?
HTH,
Marc Schwartz
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() call to resolve
that issue, as the defaults for your system are not large enough.
BTW, no need to post twice. :-)
HTH,
Marc Schwartz
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PLEASE do read the posting
wish to place more than one R statement on a
single line.
HTH,
Marc Schwartz
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Marc Schwartz
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] said: 550 5.1.6
| recipient no longer on server: [EMAIL PROTECTED] (in reply to RCPT TO
| command)
`
TIA
Regards
Patrick
A quick search of this month's r-help archive reveals:
[EMAIL PROTECTED]
HTH,
Marc Schwartz
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)
barplot(1:5)
barplot(1:5)
dev.off()
HTH,
Marc Schwartz
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.
HTH,
Marc Schwartz
snip
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?merge which performs a SQL join type operation.
HTH,
Marc Schwartz
P.S. To R Core: help.search(join) does not seem to return merge(),
which would likely be helpful here.
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On Thu, 2005-11-24 at 18:50 -0700, P Ehlers wrote:
Marc Schwartz wrote:
On Thu, 2005-11-24 at 21:55 +, Ted Harding wrote:
On 24-Nov-05 P Ehlers wrote:
Bianca Vieru- Dimulescu wrote:
Hello,
I'm trying to calculate a chi-squared test to see if my data are
different from
9 18 0
10 10 5 1
11 11 7 1
12 12 0 1
13 13 2 0
See ?merge and ?rowSums for more information.
HTH,
Marc Schwartz
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to i will provide exact axis ranges.
Note the difference between:
plot(0:5, 0:5)
and
plot(0:5, 0:5, xaxs = i, yaxs = i)
See ?par for more information.
HTH,
Marc Schwartz
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$fstatistic[1], x$fstatistic[2], x$fstatistic[3],
lower.tail = FALSE)
value
0.01368545
x - lm.res.2
pf(x$fstatistic[1], x$fstatistic[2], x$fstatistic[3],
lower.tail = FALSE)
value
0.0461472
HTH,
Marc Schwartz
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and forth.
I am guessing that your initial error problem is perhaps related to
something in the line wrapping of the code, where the call to quartz()
on Linux is not being properly commented out and thus is actually called
by the R interpreter.
HTH,
Marc Schwartz
information.
HTH,
Marc Schwartz
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R FAQ 7.19 How do I produce PNG graphics in
batch mode?, which covers the above.
HTH,
Marc Schwartz
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:
GC2 - GC[complete.cases(GC), ]
An alternative is to use na.omit() as follows:
GC2 - na.omit(GC)
See ?complete.cases and ?na.omit for more information.
HTH,
Marc Schwartz
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on the 'download' link for version 1.14 at the top of the page.
You can save the updated code to a text file and then source() it into a
R session for the time being.
HTH,
Marc Schwartz
On Thu, 2005-12-15 at 15:53 -0600, Paul Johnson wrote:
Does anybody suggest a work-around this problem?
pj
,
Marc Schwartz
On Sat, 2005-12-17 at 18:04 +0100, Kristel Joossens wrote:
Hello Klebyn,
It might be that a better solution exists, but here is something that
might help you. (I used that all y's are positive!)
R maxy=ceiling(max(y))
R plot(x,maxy-y,axes=FALSE)
R axis(1)
R axis(2,0:maxy
= TRUE)
Note also some efficiencies in the specification of the colors (which
will be recycled), names.arg (presuming that the '2' should be there
twice) and density in the second call using rep().
HTH,
Marc Schwartz
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axis(1, at = seq(0, 172, 6), cex.axis = 0.5)
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Marc Schwartz
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, at = seq(0, 1000, 100), labels = NA)
# Now do the labels
mtext(1, at = seq(0, 1000, 100), text = x.lab, line = 2)
See ?axis, ?paste and ?mtext for more information.
You might also want to look at R FAQ 7.27 on rotating axis labels,
depending upon your requirements.
HTH,
Marc Schwartz
into R.
HTH,
Marc Schwartz
On Thu, 2005-12-29 at 15:15 +0100, justin bem wrote:
I dont know Genstat, but I if possible to export you
file to text or other readable format in foriegn why
not do it ?
--- Graham Smith [EMAIL PROTECTED] a écrit :
Does anyone know if there is a package
1
2 2 1
--
INDICES: 0.1
-1 0 1
2 2 1
tapply(te.Ce[, 1], te.Ce[, 2], table)
$0
-1 1
2 3
$0.05
-1 0 1
2 2 1
$0.1
-1 0 1
2 2 1
See ?table, ?by and ?tapply for more information.
HTH,
Marc Schwartz
to Fedora
in the near future (if you want to stay with RH), since the FL folks can
drop support for RH9 at any time, leaving you vulnerable.
HTH,
Marc Schwartz
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PLEASE do
.
There are important considerations if your replicates are sized less
than the original sample size, so I would not do this lightly and would
recommend securing a copy of DH to cover some of this area.
HTH,
Marc Schwartz
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On Sat, 2005-12-31 at 12:30 +1100, paul sorenson wrote:
Marc Schwartz wrote:
...
On a side note, RH9 is a fairly dated and EOL'd distribution, with
security updates and bug patches only provided by the Fedora Legacy
folks (http://fedoralegacy.org). You should consider upgrading to Fedora
.
ISBN 0-387-98503-4. AKA The Green Book
2. William N. Venables and Brian D. Ripley. S Programming. Springer,
2000. ISBN 0-387-98966-8.
HTH,
Marc Schwartz
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PLEASE do
.
See ?expand.grid
expand.grid(P)
A B Y
1 CS 1 4
2 CX 1 4
3 CS 2 4
4 CX 2 4
5 CS 3 4
6 CX 3 4
7 CS 4 4
8 CX 4 4
9 CS 1 9
10 CX 1 9
11 CS 2 9
12 CX 2 9
13 CS 3 9
14 CX 3 9
15 CS 4 9
16 CX 4 9
HTH,
Marc Schwartz
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on the differences between R and S-PLUS.
Finally, thanks to Andy Liaw and Jon Baron, there is there RSiteSearch()
function, which will enable you to search the e-mail list archives and
documentation online from within an R session. See ?RSiteSearch.
HTH,
Marc Schwartz
can have more
than one.
Matrix
V1 V2
1 A 1
2 B 2
3 C 3
merge(Frame, Matrix, by = V1)
V1 V2.x V2.y
1 A 101
2 B 402
3 C 203
HTH,
Marc Schwartz
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,
Marc Schwartz
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
:
boxplot(count ~ factor(spray, levels = names(med)),
data = InsectSprays, col = lightgray)
So...technically two lines of code.
HTH,
Marc Schwartz
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PLEASE do
).
If the above does not help, please provide a reproducible example of the
plot code and what you are using for the manuscript.
HTH,
Marc Schwartz
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PLEASE do read
additional details on what it is you are trying to do
here and we can attempt to offer more specific guidance.
HTH,
Marc Schwartz
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PLEASE do read the posting guide! http
appears
as Linda posted.
However, there is an errata document here:
http://www.crcpress.com/e_products/downloads/download.asp?cat_no=C4088
which shows the corrected text as:
aml1 - aml[aml$group==1,] # Maintained group only
esf.fit - survfit(Surv(aml1$weeks,status) ~ 1)
HTH,
Marc Schwartz
corrections above are not required.
Hope those clarifications help.
Marc Schwartz
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
by the 'ann', 'axes', 'xaxt' and 'yaxt'
arguments to skip other components of the plot such as titles and axes.
See ?plot.default, ?title, ?axis, ?mtext and ?text for more information.
HTH,
Marc Schwartz
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