[R] Multiple Graphs with heatmap

I'd like to plot a heatmap along with a silhouette plot and clusterView plot in the same graphic window however both heatmap and heatmap.2 create a new window and will not appear with other graphs when using the par(mfrow= ) option. Does anyone have an alternative which would put these plots

[R] mfrow heatmap

I'd like to plot a heatmap along with a silhouette plot and clusterView plot in the same graphic window however both heatmap and heatmap.2 create a new window and will not work with the par(mfrow= ) option. Does anyone have an alternative which would put these plots together in a single

[R] randomForest impotance problem with combine

I'm building a RF 50 trees at a time due to memory limitations (I have roughly .5 million observations and around 20 variables). I thought I could combine some or all of my forests later and look at global importance. If I have say 2 forests : tree1 and tree2, they have similar Gini and Raw

Re: [R] randomForest importance problem with combine

My apologies, subject corrected. I'm building a RF 50 trees at a time due to memory limitations (I have roughly .5 million observations and around 20 variables). I thought I could combine some or all of my forests later and look at global importance. If I have say 2 forests : tree1 and

[R] cex in xlab, ylab and zlab of persp

I've had no success using what I think is the correct code to change the default size of the x, y and z labels in a persp graph (i.e. cex.lab). Is there a particular specification to accomplish this? Many thanks, Joe Retzer [[alternative HTML version deleted]]

[R] plot.randomForest default mtry values

When using the plot.randomForest method, 3 error series (by number of trees) are plotted. I suspect they are associated with the 3 default values of mtry that are used, for example, in the tuneRF method but I'm not sure. Could someone confirm? Also, is it possible to force different values of

[R] Bold Substring in mtext (newbie question)

Hi everyone, I suspect this is an easy task however I've not been able to accomplish it. I'd like to create an mtext title which has certain words bold, the rest not bold. So far I've been able to create one which is all bold, one which is all not bold and one which has bold and not bold

[R] mtext bold font problem

Hi everyone, I suspect this is an easy task however I've not been able to accomplish it. I'd like to create an mtext title which has certain words bold, the rest not bold. So far I've been able to create one which is all bold, one which is all not bold and one which has bold and not bold

[R] silhouette plot colors from trimkmeans solution

I was trying to create a multi-color silhouette plot (each cluster a different color) from clusters created by trimkmeans. This works straighforwardly on an object created from pam however my colors are interwoven when I try the same approach on clusters from trimkmeans. I also tried sorting

[R] Newbie question: setting rgl.surface plot attributes

I don't seem to be able to label the x, y or z axis when creating a 3d chart using rgl.surface. I'd like to have them parallel to the axis line and move with the graph when rotated. Can this be done? Many thanks, J. Retzer [[alternative HTML version deleted]]

Re: [R] R2WinBUGS error Solved, THANK YOU!

AM To: Joseph Retzer Cc: r-help@stat.math.ethz.ch Subject: Re: [R] R2WinBUGS error Joseph Retzer wrote: Dear R-help, I'm using the R2WinBUGS package and getting an error message: Error in file(file, r) : unable to open connection In addition: Warning message

[R] R2WinBUGS error

Dear R-help, I'm using the R2WinBUGS package and getting an error message: Error in file(file, r) : unable to open connection In addition: Warning message: cannot open file 'codaIndex.txt', reason 'No such file or directory' I'm using R 2.2.1 and WinBUGS 1.4.1 on a

Re: [R] R2WinBUGS error

Dear R-help, I'm using the R2WinBUGS package and getting an error message: Error in file(file, r) : unable to open connection In addition: Warning message: cannot open file 'codaIndex.txt', reason 'No such file or directory' I'm using R 2.2.1 and WinBUGS 1.4.1

[R] R2WinBUGS erro

Dear R-help, I'm using the R2WinBUGS package and getting an error message: Error in file(file, r) : unable to open connection In addition: Warning message: cannot open file 'codaIndex.txt', reason 'No such file or directory' I'm using R 2.2.1 and WinBUGS

[R] 2 variable partial dependence plot for Random Forest

Has anyone created a 2 variable partial dependence plot based on a randomForest object? Or would anyone have a suggestion as to how to do this? Many thanks, J. Retzer [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing

[R] Heatmap.2 axes question

I'm suppressing the labeling of my rows and columns in heatmap.2 using the commands: labRow = , labCol = But I'd like to annotate them again using the axis command: axis(1, at=seq(500, 1000, 500)) mtext(Group 1, Group 2) For some reason however it appears that the

[R] Any addtional information on Flexible Discriminant Analysis (fda)

Hi Everyone, I posted a similar, albiet more specific, question a while back and didnt get a response so I thought I'd try once more with a more general framing. Basically I'm wondering if anyone has any code, examples/illustrations, documentation (besides the basic R docs on mda/fda)

[R] Using Flexible Discriminant Analysis (fda) in mda

Greetings everyone, I was wondering if anyone had experience in using fda (flexible discriminant analysis) in the mda package. Specifically, I can run the model but I cant locate/produce much of anything beyond the predicted values and confusion matrix. I've been searching for more examples or