Hi,
thanks for reporting on a potential issue with writeMat() in R.matlab.
However, I think you are blaming the wrong source here. There is
basically nothing wrong with writeMat() and the MAT files written by
it can indeed be read by Matlab.
I think you are experiencing two different problems.
Hi.
On Fri, Oct 29, 2010 at 3:31 AM, Claudia Beleites cbelei...@units.it wrote:
Dear Henrik,
sorry for bothering you with a report hastily pasted together and not
particularly nice for you as I used my toy data flu from a non-standard
package. I should have better used e.g. the iris.
I'm
On Wed, Nov 3, 2010 at 1:04 PM, ivo welch ivo.we...@gmail.com wrote:
thanks, eric---I need a little more clarification. *yes, I write
functions and then forget them. so I want them to be self-sufficient.
I want to write functions that check all their arguments for
validity.) For example,
Hi,
I am also interest in ways to in R send signals to other R
sessions/processes, ideally in (what appears to be) an OS-independent
way. For what it is worth, related question have been asked before,
cf. R-devel thread 'Sending signals to current R process from R
running under MS Windows (c.f.
, Henrik Bengtsson h...@biostat.ucsf.edu wrote:
Hi,
I am also interest in ways to in R send signals to other R
sessions/processes, ideally in (what appears to be) an OS-independent
way. For what it is worth, related question have been asked before,
cf. R-devel thread 'Sending signals to current R
See findSourceTraceback() in the R.utils package.
It's been discussed before, e.g.
http://www.mail-archive.com/r-help@r-project.org/msg112375.html
http://www.mail-archive.com/r-help@r-project.org/msg111871.html
Beware, if you find yourself having to do this, it may be that you are
doing
Hi,
note that to expand tilde, there is also path.expand() which should
give less surprises than Sys.glob().
I can confirm that this is not only Windows, but also on Linux;
dir(~/ttt)
[1] foo.txt
unlink(~/ttt, recursive=TRUE)
dir(~/ttt)
[1] foo.txt
unlink(path.expand(~/ttt), recursive=TRUE)
Just to get the message through that some already tried, e.g. on
Windows 7 with R (Rterm) you get:
cat(\u2591,\u2592,\u2593)
¦ ¦ ¦
See it didn't even cut'n'paste the same visual symbols as I see in
Rterm but I guess you cannot see that. Make sense? No? Point is,
expect issues if you're
Better is probably to return() from a function, i.e. define a function
in your script and call that at the end of your function, e.g.
- - - -
main - function() {
# bla
# bla
if (something) {
return();
}
# otherwise
# bla
}
main();
- - - -
Otherwise, here is a hack:
Hi,
On Sun, Nov 21, 2010 at 9:27 PM, Hana Lee hana...@email.unc.edu wrote:
Hi!
I have a matrix called M with dimension (586,100,100).
First of all, In R it is only an object with *two* dimensions that is
called matrix. Anything with two or more dimensions is called an
array. Example:
x -
Sorry, I did a mistake corrected below.
On Sun, Nov 21, 2010 at 9:50 PM, hb h...@biostat.ucsf.edu wrote:
Hi,
On Sun, Nov 21, 2010 at 9:27 PM, Hana Lee hana...@email.unc.edu wrote:
Hi!
I have a matrix called M with dimension (586,100,100).
First of all, In R it is only an object with *two*
See R.utils package and sourceDirectory(), e.g.
sourceDirectory(R/);
You can also specify that you only want to reload files that have been
modified, e.g.
sourceDirectory(R/, modifiedOnly=TRUE);
/Henrik
On Tue, Nov 23, 2010 at 7:04 AM, Santosh Srinivas
santosh.srini...@gmail.com wrote:
Hello
rows - which(apply(mapply(x, r, FUN===), MARGIN=1, FUN=all));
/H
On Thu, Nov 25, 2010 at 1:59 AM, Luedde, Mirko mirko.lue...@sap.com wrote:
Dear all,
this looks pretty much a standard problem, but I couldn't find a
satisfying and understandable solution.
(A) Given a data frame (or matrix),
What is your sessionInfo()?
/Henrik
On Sun, Aug 15, 2010 at 10:47 AM, pablo.andrade pablo.andr...@gmail.com wrote:
Hi,
Is there any function to replace colProds that finds column-wise products of
a matrix?
Or is there any other function that would give a better solution this
problem ?
For what's it worth, the Exception class of R.oo extends the
simpleError class. When an Exception object is instantiated it also
records the stack trace (traceback()). Then when the exception is
thrown it will behave just as stop(). For the convenience,
throw(message) does all this in one go,
See the xps package over at Bioconductor:
http://www.bioconductor.org/packages/release/bioc/html/xps.html
/H
On Sun, Aug 22, 2010 at 4:53 PM, Sebastian White swh...@bnl.gov wrote:
Hello,
I was told that work had been done to use R with the CERN developed
framework ROOT but can't find anything
Hi,
what is the version of Matlab you are running?
Could you show a minimum verbatim example - starting with a fresh R
session and library(R.matlab) - that gives you the error?
Have you tried the example of help(Matlab)? Then, for troubleshooting
it could be useful to ask Matlab to display
Hi,
could you send me what Matlab is outputting. When I send the following from R:
evaluate(matlab, A=2;);
Sending expression on the Matlab server to be evaluated...: 'A=2;'
and Matlab should print something like:
Received cmd: 1
eval string: A=2;
Received an 'OK' reply (0) from the Matlab
Hi,
the reason for your problem is that there is a single quotation mark
in the temporary pathname generated by Matlab which confuses Matlab
when trying to save the file. Try replacing the existing
MatlabServer.m file (should be in the directory where Matlab is
running), with this file:
Hi,
let's stick with the remote=FALSE case first. What output does Matlab
produce now? That is really key information in order to solve this.
Also, make sure that you really restart the MatlabServer.
/H
On Fri, Aug 27, 2010 at 3:56 PM, michael tufemich...@gmail.com wrote:
Henrik,
I
On Fri, Aug 27, 2010 at 6:16 PM, michael tufemich...@gmail.com wrote:
Henrik,
When I set remote=FALSE, I got this error:
??? Error: A MATLAB string constant is not terminated properly.
Error in == MatlabServer at 197
eval(expr);
Also the lines before.
/Henrik
In R:
Hi.
On Fri, Aug 27, 2010 at 7:08 PM, michael tufemich...@gmail.com wrote:
Henrik,
The line before that is:
Received cmd: 2
save
C:\Users\FAN'S~1\AppData\Local\Temp\tpe2b4012b_f9ed_402d_af0f_f21ebd8116a6.mat
-V6 B
You should see have seen something like:
save(tmpname, '-V6', 'B');
Michael,
could you please give me *verbatim* details on what messages you are
seeing. In your previous reply you did *not* report seeing
save(tmpname, '-V6', 'B'); and now you say you get it. Please do
not abbreviate what you are getting (e.g. save(temp,-v6,B)), because
that will not be useful
Hi.
On Sat, Aug 28, 2010 at 3:50 PM, michael tufemich...@gmail.com wrote:
Henrik,
OK, finally I got the problem: I have an apostrophe in my
windowns 7 user name. That mess up the file name. So I logged in using a
guest account and it works:
Received cmd: 1
eval string: B
B =
Don't underestimate the importance of the choice of the algorithm you
use. That often makes a huge difference. Also, vectorization is key
in R, and when you use that you're really up there among the top
performing languages. Here is an example from the official R wiki
illustrating my points:
You can create an empty matrix (or even array) of list elements and
then assign your data frames to whichever element you want. Example:
# Allocate empty matrix...
x - matrix(list(), nrow=2, ncol=3);
# ...alternatively
x - array(list(), dim=c(2,3));
print(x);
[,1] [,2] [,3]
[1,] NULL
To uncompress an *.gz file into another file on disk, see also ?gunzip
in the R.utils package.
/Henrik
2010/9/14 Uwe Ligges lig...@statistik.tu-dortmund.de:
See ?gzfile
Uwe Ligges
On 14.09.2010 11:02, Wonsang You wrote:
Dear Fellows,
I would like to know how to uncompress a gz file at
the
function 'gzfile'.
Best Regards,
Wonsang
On 14 September 2010 15:23, Henrik Bengtsson h...@stat.berkeley.edu wrote:
To uncompress an *.gz file into another file on disk, see also ?gunzip
in the R.utils package.
/Henrik
2010/9/14 Uwe Ligges lig...@statistik.tu-dortmund.de:
See ?gzfile
Uwe
See also the matrixStats package on CRAN.
/Henrik
On Fri, Sep 17, 2010 at 10:17 AM, Dennis Murphy djmu...@gmail.com wrote:
Hi:
Here's a simple example that you can tune to your needs:
m - matrix(rpois(100, 10), nrow = 10)
# Function to compute summary statistics:
f - function(x) c(min =
Make sure to look at
as.character(FnO_Data$Date[m:l])
My $.02
/Henrik
On Sat, Sep 18, 2010 at 10:31 PM, Santosh Srinivas
santosh.srini...@gmail.com wrote:
I tried this and it works too (For most part) strangely for certain
dates (20090831) it is giving NA ...
FnO_Data$Date[m:l]
[1]
x - lapply(SumaPluvi, FUN=[, 1);
n - sapply(x, FUN=length);
print(table(n));
print(which(n != 1));
My $.02
/H
On Sun, Sep 26, 2010 at 4:12 PM, Luis Felipe Parra
felipe.pa...@quantil.com.co wrote:
Hello I want to unlist the attached element getting only the first element
in each element of the
it the number of elements changes from 5065 to 5084 if there
is no list element with length greater than one. Do you know what can be
happening?
Thank you
Felipe Parra
On Mon, Sep 27, 2010 at 8:05 AM, Henrik Bengtsson h...@stat.berkeley.edu
wrote:
x - lapply(SumaPluvi, FUN=[, 1);
n - sapply(x
On Mon, Sep 27, 2010 at 5:27 AM, Ben Bolker bbol...@gmail.com wrote:
Luis Felipe Parra felipe.parra at quantil.com.co writes:
Hello, I am trying to unlist a list, which is attached, and I am having the
problem that when I unlist it the number of elements changes from 5065 to
5084
x -
To speed things up, you certainly want to give R more clues about your
data files by being more explicit by many of the arguments (cf.
help(read.table), especially specifying argument 'colClasses' makes a
big difference.
/Henrik
On Tue, Sep 28, 2010 at 10:24 AM, statquant2 statqu...@gmail.com
See findSourceTraceback() of R.utils, e.g.
library(R.utils);
example(findSourceTraceback);
However, in general I would avoid using the above, because in nearly
all cases there is a better solution which does not rely on knowing
paths, e.g. setting up functions and calling those instead of using
apply() is your friend. You can specify more than one dimension in
argument 'MARGIN'. Example:
x - array(1:100,c(3,4,5))
y - apply(x, MARGIN=c(2,3), FUN=sum)
y
[,1] [,2] [,3] [,4] [,5]
[1,]6 42 78 114 150
[2,] 15 51 87 123 159
[3,] 24 60 96 132 168
[4,] 33
On Sun, Oct 3, 2010 at 5:47 AM, Mike Marchywka marchy...@hotmail.com wrote:
Date: Sat, 2 Oct 2010 23:59:50 -0300
From: nilzabar...@gmail.com
To: tal.gal...@gmail.com
CC: r-help@r-project.org
Subject: Re: [R] Output Graphics GIF
On Mon, Sep
On Sun, Oct 3, 2010 at 10:59 AM, Ab Hu master.rs...@yahoo.com wrote:
Hi,
I have a binary file which has the following structure:
1) Some header in the beginning
2) Thousands of 216-byte data sub-grouped into 4 54-byte data structured as
4-byte time stamp (big endian) followed by 50 1-byte
Just to clarify to the OP (and please correct me if I'm wrong),
having to run as admin should only be needed when you have to *update*
(update.packages()) the so called recommend packages (comes with R)
that sits under 'Program Files'. If you don't run as admin and try
to *install*
On Tue, Oct 5, 2010 at 5:21 PM, Carrie Li carrieands...@gmail.com wrote:
I am sorry that it has been couple days.
I've read the website you provided below, but still don't quite know if this
is doable.
The maximum vector length is 2^31-1, so here is what I tired, and it
returned errors as
See findSourceTraceback() in the R.utils package.
/Henrik
On Wed, Oct 6, 2010 at 8:49 AM, Ralf B ralf.bie...@gmail.com wrote:
Here the general (perhaps silly question) first: Is it possible for a
script to find out if it was sourced by another script or run
directly?
Here a small example
Alternatively,
see rowQuantiles() in the matrixStats package.
/Henrik
On Wed, Oct 6, 2010 at 10:34 PM, Joshua Wiley jwiley.ps...@gmail.com wrote:
Hi,
This should do it, for details, see ?apply
a - matrix(rnorm(1),100,100)
t(apply(a, 1, quantile, probs = c(.3, .5)))
Basically you
Hi,
Section 'Line Type Specification' in help(par) explains how you can do
custom line types. For example:
plot(NA, xlim=c(0,1), ylim=c(0,1));
abline(h=1/2, col=blue, lwd=2, lty=88);
will draw a dashed line segment where the line is composed of 8 units
of on (blue color) and 8 units of off
device dependent (I'm using Windows).
HTH
Peter Alspach
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
project.org] On Behalf Of Henrik Bengtsson
Sent: Monday, 11 October 2010 10:50 a.m.
To: r-help
Subject: [R] Line Type Specification: lty=onoff
...or the R.rsp package. -H
On Sat, Oct 17, 2009 at 10:37 AM, Gabor Grothendieck
ggrothendi...@gmail.com wrote:
Try this:
results=latex,echo=false=
for(i in 1:10) {
cat(...latex code...)
}
@
or check out the brew package.
On Fri, Oct 16, 2009 at 3:25 PM, Jacob R. Marcus
Have a look at your company name and your phone number. Nudge nudge,
wink wink, say no more... /H
On Fri, Oct 23, 2009 at 9:02 AM, Dennis Fisher fis...@plessthan.com wrote:
Colleagues,
I wish to execute a task only if a particular file is newer than a second
file. I can access the file
There are two basic class method dispatching mechanisms in R: S3 and
S4. These are not R.oo.
From a *design* point of view, S3 and S4 are rather similar, or more
precisely, you can do the same things in both if you're careful. From
an implementation point of view, they are different, and the
unlist(..., use.names=FALSE) is heaps faster than the default
unlist(..., use.names=TRUE), cf.
z - split(sample(1000,1e6,rep=TRUE),rep(1:1e5,10))
system.time(y1 - Reduce(union,z))
user system elapsed
5.980.005.89
system.time(y2 - unique(unlist(z)))
user system elapsed
path - data;
dir.create(path);
for (i in 1:10) {
m - i:5;
filename - sprintf(m%02d.Rbin, i);
pathname - file.path(path, filename);
save(m, file=pathname);
}
/H
On Sun, Nov 1, 2009 at 6:53 PM, jeffc h...@andrew.cmu.edu wrote:
Hi,
I would like to save a few dynamically created objects
On Sun, Nov 1, 2009 at 7:48 PM, David Winsemius dwinsem...@comcast.net wrote:
On Nov 1, 2009, at 10:16 PM, Henrik Bengtsson wrote:
path - data;
dir.create(path);
for (i in 1:10) {
m - i:5;
filename - sprintf(m%02d.Rbin, i);
pathname - file.path(path, filename);
save(m, file=pathname
On Sun, Nov 1, 2009 at 9:18 PM, David Winsemius dwinsem...@comcast.net wrote:
On Nov 1, 2009, at 11:28 PM, Henrik Bengtsson wrote:
On Sun, Nov 1, 2009 at 7:48 PM, David Winsemius dwinsem...@comcast.net
wrote:
On Nov 1, 2009, at 10:16 PM, Henrik Bengtsson wrote:
path - data;
dir.create
?do.call
/H
On Sun, Nov 1, 2009 at 10:58 PM, Charlie Sharpsteen
ch...@sharpsteen.net wrote:
On Sun, Nov 1, 2009 at 8:07 PM, Ning Ma pnin...@gmail.com wrote:
Hi, everybody
Is there any way to execute a function, which name is stored in a string.
such as:
a - ls()
foo(a) ## same as ls()
On Thu, Nov 5, 2009 at 11:03 PM, antonio.gasparr...@lshtm.ac.uk wrote:
Thanks to everyone who replied.
I think the html based one works fine (even if I definitely preferred the old
chtml).
Only another comment: I chose html in my installation with Windows Vista, but
still the help pages
Please what I already wrote in my previous message of this thread.
Also, everything in R.oo is based on S3 and it uses standard R
constructs and data types to achieve what it does.
You can submit packages based on R.oo, and there are several such
packages on CRAN, see 'Reverse dependencies' on
On Sun, Apr 18, 2010 at 7:26 AM, steven mosher mosherste...@gmail.com wrote:
Ya I got that result but fixing it was a mystery. especially since I will
eventually want to subtract the row max from the row Min ( or calculate the
range)
if a matrix thus is:
[,1] [,2] [,3]
[1,] NA NA NA
See readBin(), e.g.
r - readBin(pathname, what=raw, n=10e6);
str(r);
# raw [1:21] 30 31 30 31 ...
c - rawToChar(x, multiple=TRUE);
str(c);
# chr [1:21] 0 1 0 1 0 0 1 0 1 0 ...
i - as.integer(r);
str(i);
# int [1:21] 48 49 48 49 48 48 49 48 49 48 ...
/Henrik
On Sun, Apr 25, 2010 at 6:52 PM,
See this thread:
Stefan Theußl, Update: working mirrors and services due to IT failure
at WU, April 26, 2010:
https://stat.ethz.ch/pipermail/r-help/2010-April/236601.html
/Henrik
On Tue, Apr 27, 2010 at 3:02 PM, Andrew Hill andy.bob.h...@gmail.com wrote:
Hello,
I am attempting to install
On Fri, May 14, 2010 at 12:29 AM, Trojan ypa...@usc.edu wrote:
Hi,
I had originally posted regarding an error when trying to install package -
GenABEL - it has now become clear that R is not able to connect to the net.
Below are a couple of things I've tried with the resulting errors
I am
I won't have an answer but it will help others to help you if you also
report what the following gives:
library(gtools);
print(sessionInfo());
and
print(packageDescription(gtools));
My $.02
Henrik
On Mon, May 17, 2010 at 4:01 AM, agusdon agus...@gmail.com wrote:
Hello,
I'm fairly new to
On Mon, May 17, 2010 at 11:12 AM, jim holtman jholt...@gmail.com wrote:
?'[['
What I think you want is:
x - V1_1
mean(l[[x]])
Also you need to look at 'get'.
...and if the answer is get() or assign() you should usually consider
library(fortunes); fortune(rethink the question);
/Henrik
On Tue, May 18, 2010 at 4:03 AM, Daisy Englert Duursma
daisy.duur...@gmail.com wrote:
Hello,
I am a bit over my head on this issue. My colleagues and I are running
R off of our server. We all have admin rights and prior to yesterday
we all had our own libraries. Our main system administrator
On Wed, May 19, 2010 at 7:20 AM, milton ruser milton.ru...@gmail.com wrote:
*but* going back to my question, is not true
that already installed packages will not be
reinstaled. I ran:
install.packages(c(ggplot2),dependencies=T)
On Thu, May 20, 2010 at 3:06 PM, Ivan Calandra
ivan.calan...@uni-hamburg.de wrote:
I've found the answer:
get() is exactly what I need, I completely forgot about this function.
There might be a better way, but that works for me.
I R.utils, there are saveObject() and loadObject(), which allows
R version/sessionInfo()?
/H
On Fri, May 21, 2010 at 10:08 PM, David Reiss dre...@systemsbiology.org wrote:
Hi,
I am trying to check a package via R CMD CHECK and it is failing with
Error: '\s' is an unrecognized escape in character string starting \s
The culprit looks something like this:
On Wed, May 26, 2010 at 8:26 AM, Tal Galili tal.gal...@gmail.com wrote:
Hello Greg,
Thank you for the coding.
A few questions and remarks:
1) I have a feature request that I believe Faiz is interested in:
He would like to have the formatting of tables/data.frames in the output to
be
This is sounds like a Bioconductor related issue; please ask your
question on the bioc mailing list. /Henrik
On Wed, May 26, 2010 at 8:51 AM, mahalakshmi sivamani
mahasiva1...@gmail.com wrote:
Hi,
While trying to install hgu133acdf- windows package in R im getting the
following error and
str(head(x))
str(head(x, n=5))
/H
On Thu, Dec 3, 2009 at 10:18 PM, David Winsemius dwinsem...@comcast.net wrote:
On Dec 3, 2009, at 10:11 PM, Peng Yu wrote:
x=split(1:1000,1:1000)
str(x)
Although str() can suppress long output for vectors, but it can not
suppress long output for list.
Related...
Rule of thumb:
Pre-allocate your object of the *correct* data type, if you know the
final dimensions.
/Henrik
On Thu, Dec 10, 2009 at 8:26 AM, Peng Yu pengyu...@gmail.com wrote:
I'm wondering where I can find the detailed descriptions on R memory
management. Understanding this
copyDirectory() in the R.utils package.
/Henrik
On Fri, Dec 11, 2009 at 1:01 AM, Paul Evans p.evan...@yahoo.com wrote:
Hi,
I am using the windows version of R. I wanted to copy a directory (containing
several files) to another directory. Is there any command in R that will let
me do this
-Original Message-
From: henrik.bengts...@gmail.com [mailto:henrik.bengts...@gmail.com] On
Behalf Of Henrik Bengtsson
Sent: Monday, November 02, 2009 12:34 AM
To: David Winsemius
Cc: r-help@r-project.org; jeffc
Subject: Re: [R] save an object by dynamicly created name
On Sun, Nov 1
library(R.oo);
setMethodS3(ll, character, function(pathname, ..., force=FALSE) {
require(R.cache) || throw(Package not loaded: R.cache);
# Argument 'pathname':
pathname - Arguments$getReadablePathname(pathname, mustExist=TRUE);
# Check for cache results
fi - file.info(pathname);
Use
submat - data[1:i,, drop=FALSE]
/H
On Wed, Dec 23, 2009 at 6:46 PM, Francesco Napolitano
franap...@gmail.com wrote:
Hi all,
I'm trying to learn R after years of Matlab's experience. Here is an
issue I couldn't solve today.
Consider the following piece of code (written by memory):
Please give reproducible example, more information on your
troubleshooting and sessionInfo(). Cannot reproduce:
pathname - empty.txt
cat(file=pathname)
print(file.info(pathname))
size isdir mode mtime ctime
empty.txt0 FALSE 666 2010-01-01 12:50:55
No paths for shell() - instead throw it commands as if you were at the
Windows command prompt, i.e.
res - shell(find, intern=TRUE);
str(res);
chr [1:3454] . ./.Rhistory ./aroma.affymetrix ...
/H
2010/1/7 Uwe Ligges lig...@statistik.tu-dortmund.de:
Argh. I see it as well. Will dig a lit
library(R.utils);
sourceDirectory(myRFiles/, modifiedOnly=TRUE);
See ?sourceDirectory (regardless what the Rd help say, any '...'
argument is passed to sourceTo()).
/Henrik
On Fri, Jan 8, 2010 at 7:38 AM, Hao Cen h...@andrew.cmu.edu wrote:
Hi,
I wonder what is a better way to organize a lot
. Nothing to worry about. I've added readLines(con=fh,
warn=FALSE) for the next release to get rid of such warnings.
/Henrik
Maybe the two issues are related. Please advise.
thanks
Jeff
On Fri, January 8, 2010 7:56 pm, Henrik Bengtsson wrote:
library(R.utils); sourceDirectory(myRFiles
Forgot to say that when you use that findit.bat script, you get:
Rgui.exe:
system(findit.bat)
Errorlevel is 1, not found
shell(findit.bat)
Errorlevel is 1, not found
Rterm.exe:
shell(findit.bat)
c:\config.sys
Errorlevel is 0, found
system(findit.bat)
c:\config.sys
Errorlevel is 0,
cat(file=foo.txt, Hello world\n)
shell('find Hello foo.txt')
Hello world
shell('find Hello foo.txt', intern=TRUE)
[1] Hello world
shell('type foo.txt | find Hello')
Hello world
shell('type foo.txt | find Hello', intern=TRUE)
[1] Hello world
A person at
On Thu, Jun 3, 2010 at 11:11 AM, azam jaafari azamjaaf...@yahoo.com wrote:
Dear All
Pleas help me to increase the memory in R.
In order increase memory, I read the FAQ and follow the instruction as below
Close R, then right-click on your R program icon (the icon on your desktop or
in
FYI, follow the information in the email footer:
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and make sure at a minimum to report your sessionInfo(). That
increases your chances to get a response.
/Henrik
On Sat, Jun 5, 2010 at 11:42 AM, Thomas Steiner
On Wed, Jun 9, 2010 at 2:20 PM, Nikhil Kaza nikhil.l...@gmail.com wrote:
which(abs(v - .1) = .Machine$double.eps)
seems to me too cumbersome to write. Any other easier way? all.equal does
not quite work
See isZero() in R.utils, e.g.
isZero(abs(v - 0.1));
You can adjust the precision with
Pass an object of, or containing an, environment. Then whenever you
modify any object inside the environment, the changes will remain
also when exiting from the function(s). This has been used by many
for quite some time and is the standard way to do it, if you need this
feature. See packages
Isn't this what source(..., chdir=TRUE) is for? See help(source).
/H
On Fri, Jun 11, 2010 at 2:33 AM, Marcin Gomulka mrgo...@gmail.com wrote:
AFAIK a script run through source() does not have any legit way to learn
about it's own location.
I need this to make sure that the script will find
If file 'geoFeatures.RData' contains an object with name
'geoFeatures', it is loaded if you do:
load(geoFeatures.RData);
However, when you do:
geoFeatures - load(geoFeatures.RData);
it will be loaded, but immediately overwritten because you create a
new object with the same name. Note that
x - 1:10;
dim(x) - c(length(x)/2, 2);
print(x);
[,1] [,2]
[1,]16
[2,]27
[3,]38
[4,]49
[5,]5 10
str(x[,1]);
str(x[,2]);
If length(x) is odd, some care is needed, e.g. x - matrix(x, ncol=2,
byrow=FALSE);
/H
On Wed, Jun 16, 2010 at 1:15 PM, Alex van der
You might also want to consider _partial sorting_ by using the
'partial' argument of sort(), especially when the number of data
points is really large.
Since argument 'decreasing=FALSE' is not supported when using
'partial', you have to flip it yourself by negating the values, e.g.
x -
On Mon, Jun 21, 2010 at 4:23 PM, Gábor Csárdi csa...@rmki.kfki.hu wrote:
On Mon, Jun 21, 2010 at 4:17 PM, Duncan Murdoch
murdoch.dun...@gmail.com wrote:
[...]
The requirement is that the methods need to have signatures that contain all
the arguments of the generic. If the generic includes
Hi,
repost your question to the Bioconductor mailing list instead, and
your chances for getting help will be much greater:
http://bioconductor.org/docs/mailList.html
/Henrik
On Tue, Jul 6, 2010 at 9:06 AM, Hasan, Ahmed Ryadh - hasar001
ahmed.ha...@postgrads.unisa.edu.au wrote:
Dear all,
I
Sorry for asking the obvious, but have you confirmed that you are
running the same version of R on both systems?
/H
On Tue, Jul 6, 2010 at 2:11 PM, Bos, Roger roger@rothschild.com wrote:
Uwe,
I suspect I might be having a similar problem as the R code I generate
in Windows editor
?png says:
If you plot more than one page on one of these devices and do not
include something like %d for the sequence number in file, the file
will contain the last page plotted.
meaning
png(foo%03d.png, width=300, height=300);
plot(1); plot(2); plot(3);
dev.off();
generates foo001.png,
Hi,
don't worry about those setGenericS3()/setMethodS3(0 warnings - they
are just informative.
I am aware of that last warning:
Warning: package 'R.oo' claims to be built under R version 2.10.0 but
is missing some help files and needs to be re-installed
but it does not go away when you
A side note: The NA vs NaN does not seem to play a role here, because:
#define both_non_NA(a,b) (!ISNAN(a) !ISNAN(b))
So, it is the same type of test used in line 9 and in line 11.
/Henrik
On Fri, Jan 22, 2010 at 9:52 AM, Christophe Genolini
cgeno...@u-paris10.fr wrote:
Thanks both of you.
Hi,
this could be due to how NFS works. Note that there can be up to a 30
second delay before other hosts on the same file system see the
updates that was flushed by one machine. You basically cannot treat
files on an shared NFS file system as if you are working on a single
machine. You have
On Sun, Jan 24, 2010 at 3:56 AM, Duncan Murdoch murd...@stats.uwo.ca wrote:
On 23/01/2010 10:40 PM, rn00b wrote:
I am using readBin to continuously read characters from the binary file.
I'm
trying to figure out how many characters are in the file. What I would
like
to do is something like
On Thu, Feb 4, 2010 at 9:18 PM, Liaw, Andy andy_l...@merck.com wrote:
From: Peng Yu
On Wed, Feb 3, 2010 at 10:01 AM, Peng Yu pengyu...@gmail.com wrote:
Some examples in the help page are too long to be copied
from screen.
Could somebody let me know some easy way on how to extract
the
I was looking for a fast line counter as well a while ago and ended up
writing a small function in R:
countLines() in the R.utils package
At least at the time, it was faster than readLines() [for unknown
reasons]. It is also more memory efficient. It supports connections.
I don't think it
The OP may be interested in using low-level readBin() and writeBin()
instead. One can then either assign dimension attributes to the
object to access the data as a matrix/an array. Note that assigning
dimension attributes will probably(?) allocate a copy. If that is not
wanted, it is not that
If S+ has seq(length=...), that would solve any parsing problems. /Henrik
On Fri, Feb 12, 2010 at 4:59 PM, William Dunlap wdun...@tibco.com wrote:
The next version of S+ will have seq_len in
it. Currently the CSAN package Rcompat contains
it.
Parsing the name seq_len can be a problem, since
On Thu, Feb 18, 2010 at 7:15 PM, Erik Iverson er...@ccbr.umn.edu wrote:
Erik Iverson wrote:
Cannot reproduce, what is branches? If you can narrow it down to a
commented, minimal, self-contained, reproducible example, you're far more
likely to get help from the list.
My blinded guess
What does
print(as.integer(branches))
give? That is what rep() uses.
/H
On Thu, Feb 18, 2010 at 7:49 PM, dkStevens david.stev...@usu.edu wrote:
I could send the entire bit of code but I was hoping that someone would
recognize the issue from past experience. I may be an artifact of other
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