Re: [R-SIG-Mac] .Rhistory problems

2010-05-08 Thread Rob Goedman
Vishy, This is the problem that if the workspace is saved, R (R itself, not R.app) also saves a history file, typically with the name .Rhistory. This file is empty and overwrites an R.app history file with the same name. I suggest to change the R.app history filename (in Startup preferences)

Re: [R-SIG-Mac] getting history() to work

2010-04-11 Thread Rob Goedman
David, From R.app you can't. History is kept in a separate file as specified by the Startup preferences. In your case I don't think RHOME is defined, try '~/Rhistory' or '~/.Rosxhistory' in the Startup preferences, enter a few commands and quit R.app ( e.g.Apple/Command-Q, little red button

Re: [R-SIG-Mac] [R] R 2.10 memory leak on OS X

2009-11-19 Thread Rob Goedman
Steve, Do you have a .Rhistory and/or a .Rdata file in your home/working dirs? If so, can you rename them temporarily and restart R again? Or you can send me your ~/Library/Preferences/org.R-project.R.plist file. Regards, Rob On Nov 19, 2009, at 7:45 PM, Stropharia wrote: Dear R users,

Re: [R-SIG-Mac] R.app intractable history problem

2009-11-05 Thread Rob Goedman
Twice I've tried to send below email. I do get a message back that it is being processed but it never shows up in my mailbox from r-sig-mac. Agustin and I are exchanging emails to sort out his issue, but I'm just wondering if other folks have ongoing history trouble on their systems.

Re: [R-SIG-Mac] R.app intractable history problem

2009-11-04 Thread Rob Goedman
David Vi, On Nov 4, 2009, at 7:20 AM, David Winsemius wrote: Even if you do not want to update to 10.0, there can be no reason not to update to 2.9.2. I cannot promise that will fix your problems but it certainly top on the list of maneuvers to try. Further on Vi's question and David's

Re: [R-SIG-Mac] R.app intractable history problem

2009-11-04 Thread Rob Goedman
The 'problem' is that both R.app and R itself save the history file (based on their settings). R saves the history after R.app, so if they both have the same name it can (and has on a few occasions :-) create a problem. Hence my suggestion to Vi to change the R.app name. R.app will store

Re: [R-SIG-Mac] R 2.10.0 beta -- please test!

2009-10-22 Thread Rob Goedman
Berend, Are you running SnowLeopard? Thanks, Rob On Oct 22, 2009, at 11:55 AM, Berend Hasselman wrote: On 19/10/2009, at 14:46, Simon Urbanek wrote: Dear Mac users, please consider testing R 2.10.0 beta *before* the release. First, we have now an automated installer generator system

Re: [R-SIG-Mac] 2.10.0 beta help functions

2009-10-15 Thread Rob Goedman
Peter, On my system (SnowLeopard, below R builds) I did see the warning messages (but the internal help worked fine). This morning I changed the htmlhelp settings as suggested by the warning message ( help_type ='html' ) in main.m and rebuild R.app. The warnings are gone and help still

[R-SIG-Mac] Follow up from: Re: [R] How to start R ...

2009-10-10 Thread Rob Goedman
, 2009, at 8:55 AM, Simon Urbanek wrote: On Apr 17, 2009, at 11:27 , Rob Goedman wrote: Hi, A long time ago I noticed below 'SystemFlippers' message started to show up, initially in R-2.8.0-alpha 64-bit. It only happens in 64-bit and if you start R.app through osascript/ AppleScript, e.g

Re: [R-SIG-Mac] R 2.9.2 release package for Leopard and Snow Leopard

2009-09-17 Thread Rob Goedman
Thanks a lot Simon! If I only want to work in 64bit, do you foresee any problems if I also remove the i386* support? I've been doing that for a while and it seems to cause no problems (I usually refresh (curl) R from your site in the morning and in that script I added the ppc* and i386*

Re: [R-SIG-Mac] AppleScript

2009-07-23 Thread Rob Goedman
Gregor, Which editor are you using? Some examples are given in 6.1 of the R OS X FAQ. Rob On Jul 23, 2009, at 5:12 AM, Gregor Reich wrote: Hi Using AppleScript it is easy to implement Command-E and Command- Return like functionality. (From the R for OS X FAQ page: 4.4.6 Editor

Re: [R-SIG-Mac] Linux user asks: What about that Editor you have built-in. Can we compile it too?

2009-05-15 Thread Rob Goedman
Paul, Hopefully someone with knowledge of Emacs ESS R on Linux will help you first! I would guess recompiling just the Editor is virtually impossible. R.app, in which the Editor is embedded, is Cocoa based. It would be a major undertaking to port R.app or at least major parts of it

Re: [R-SIG-Mac] R.app history forgets

2009-05-07 Thread Rob Goedman
Hi Loren, On May 6, 2009, at 12:01 PM, Loren Engrav wrote: Hi Double clicking bottom command: I want to keep dupes but double click problem seems to go away if I just check cleanup; if cleanup is necessary for proper behavior of bottom command, why have it optional? Originally, during

Re: [R-SIG-Mac] R.app history forgets

2009-05-06 Thread Rob Goedman
Always apply do for the directory From: Rob Goedman robjgoed...@me.com Date: Tue, 05 May 2009 21:34:16 -0700 To: Loren Engrav eng...@u.washington.edu Cc: r-sig-mac@stat.math.ethz.ch r-sig-mac@stat.math.ethz.ch Subject: Re: [R-SIG-Mac] R.app history forgets Loren, Please find my comments inserted

Re: [R-SIG-Mac] R.app history forgets

2009-05-06 Thread Rob Goedman
() rm (ABeset_gcrmaNumhom) ls() AB_gcrmaNumhom - gcrma(AA_ReadAffyNumhom, fast = FALSE) library(gcrma) .Machine$sizeof.pointer# .Machine$sizeof.pointer# # .Machine$sizeof.pointer# .Machine$sizeof.pointer# # .Machine$sizeof.pointer# # # .Machine$sizeof.pointer# From: Rob Goedman robjgoed

Re: [R-SIG-Mac] R.app history forgets

2009-05-05 Thread Rob Goedman
Loren, Can you send me a screen copy of the Startup preferences ( with the cursor inside the Startup Preferences window, press Command-Shift-4, followed by pressing the spacebar, followed by a click of the mouse button, this should write it to your Deskop as 'Picture 1'). Rob On May 5,

Re: [R-SIG-Mac] R.app history forgets

2009-05-05 Thread Rob Goedman
trouble (usually because R.app could not write to the selected directory). After this email it might be better to take this discussion off-line. Regards, Rob On May 5, 2009, at 11:50 AM, Loren Engrav wrote: Thank you attached From: Rob Goedman robjgoed...@me.com Date: Tue, 05 May 2009 11

Re: [R-SIG-Mac] R.app history forgets

2009-05-05 Thread Rob Goedman
at the R source, just at the R.app code. Rob Thank you From: Rob Goedman robjgoed...@me.com Date: Tue, 05 May 2009 12:20:51 -0700 To: Loren Engrav eng...@u.washington.edu Cc: r-sig-mac@stat.math.ethz.ch r-sig-mac@stat.math.ethz.ch Subject: Re: [R-SIG-Mac] R.app history forgets Loren

Re: [R-SIG-Mac] [Rd] crash after using graphics in Rcmdr (PR#13679)

2009-05-02 Thread Rob Goedman
with any luck. I take it as another artifact of the way documents are created/ deleted in the current R.app. Rob On May 1, 2009, at 9:16 AM, John Fox wrote: Dear Rob, Thanks for picking this up. Please see my remarks below: On Fri, 01 May 2009 07:55:46 -0700 Rob Goedman goed...@mac.com wrote

Re: [R-SIG-Mac] SystemFlippers?

2009-04-17 Thread Rob Goedman
5 Case_1_wob_0_incl_40 50 50 0 2844 -4986 5 Case_1_wob_0_incl_50 60 60 0 2906 -5215 5 Case_1_wob_0_incl_60 70 70 0 2960 -5400 5 Case_1_wob_0_incl_70 On Sep 30, 2008, at 8:39 AM, Rob Goedman wrote: Simon, On Sep 30, 2008, at 7:46 AM

[R-SIG-Mac] SystemFlippers message

2009-04-17 Thread Rob Goedman
5 Case_1_wob_0_incl_40 50 50 0 2844 -4986 5 Case_1_wob_0_incl_50 60 60 0 2906 -5215 5 Case_1_wob_0_incl_60 70 70 0 2960 -5400 5 Case_1_wob_0_incl_70 On Sep 30, 2008, at 8:39 AM, Rob Goedman wrote: Simon, On Sep 30, 2008, at 7:46 AM

Re: [R-SIG-Mac] X11 missing? ... was Re: [R] rgl persp3d bounding box color problem.

2009-03-04 Thread Rob Goedman
/libfreetype.a (for architecture ppc64): current ar archive random library Thank you all once more; David Winsemius On Mar 4, 2009, at 2:53 AM, Prof Brian Ripley wrote: On Tue, 3 Mar 2009, Rob Goedman wrote: David, I did notice in your log.txt file the following message: ld warning: in /usr/local

Re: [R-SIG-Mac] X11 missing? ... was Re: [R] rgl persp3d bounding box color problem.

2009-03-03 Thread Rob Goedman
David, Apologies if you get this twice, I changed some of my email addresses recently... To install 64-bit rgl, on my system, I install it from within a terminal as shown (abbreviated) below. From inside R.app it always fails. I appended the error I get as well. These listings I think

Re: [R-SIG-Mac] X11 missing? ... was Re: [R] rgl persp3d bounding box color problem.

2009-03-03 Thread Rob Goedman
/local/bin and /usr/X11/bin in your path. (My CRAN build of R.app is showing /usr/local/bin but not /usr/X11/ bin in its path.) There are configure arguments and variables you can use to set all the pieces, but getting the right paths should be easier. On Tue, 3 Mar 2009, Rob Goedman wrote

Re: [R-SIG-Mac] saving a quartz-plot as pdf

2009-01-18 Thread Rob Goedman
Ferdinand, Another way is through saving it as a pdf file when you select the quartz window for printing. Rob On Jan 17, 2009, at 4:52 PM, Ferdinand wrote: hi, is there a command for exporting the current plot as a pdf-file? I tried dev.copy(pdf) but it generated a pdf-file I couldn't

Re: [R-SIG-Mac] Smultron as an external editor

2008-12-25 Thread Rob Goedman
Burkard, Something along: #!/bin/bash osascript -e 'tell application R.app to activate' osascript -e tell application \R.app\ to cmd \source(file='%%p', print.eval=TRUE)\ works on my system. Regards, Rob On Dec 24, 2008, at 11:06 AM, Burkard Pfeiffer wrote: Hi there, can anyone

Re: [R-SIG-Mac] Display prefs on 2.8 for OS X

2008-11-12 Thread Rob Goedman
Marc, On R-2.9 I can reproduce your problem. I haven't tried R-2.8, but I expect it will behave similarly. For now, what seems to work is, after selecting the required color, to click the selected item box in the pref window, e.g. 'Background' before closing the color chooser or the pref

Re: [R-SIG-Mac] 64-bit build of R crashes while idle

2008-11-06 Thread Rob Goedman
Hi Simon, Not sure if I use it as much/often as Steve, but 64bit R.app is up in an open space virtually all the time on my system using a recent daily 'your' R and the GUI I build with XCode. Usually for several (2 to 3) days, used at least several times a day. If I restart R.app, like

Re: [R-SIG-Mac] Old Dell running faster than new MacBook

2008-10-25 Thread Rob Goedman
A 2.6 MacBook Pro, 2G, just to check differences between R and R.app. Not completely fair, R.app runs in 64 bit, R in Terminal in 32 bit. Stiil, always interesting to check now and then. Rob R.app (64 bit): = indexGenerator(0.08,0.15,30,100) [1] Simulation 1 of 100 done. [1] Simulation

Re: [R-SIG-Mac] .Rhistory

2008-08-10 Thread Rob Goedman
Rostam, Which version of R.app, R and OSX are you running. Do other preferences work fine? Can you change them? Rob On Aug 10, 2008, at 7:57 AM, rostam shahname wrote: Hi, I am using R.app in Mac. When I go to the R-preferences-start up menu , there is a section for history. I can specify

Re: [R-SIG-Mac] trace(..., edit=TRUE) with external editor

2008-07-22 Thread Rob Goedman
Ryan, It takes a few more steps in an external editor: 1. In your example below, with TextMate as the external editor preference, change the 1st line in the newly opened Textmate edit window from 'function (x, y, ...)', e.g. to e.g. 'myplot -function (x, y, ...)' 2. Add, again

Re: [R-SIG-Mac] R GUI menu bar oddness

2008-04-09 Thread Rob Goedman
Peter, Thanks for your report. I noticed it as well and will be resolved asap. Also, all the Quartz R.app features/preferences are not yet linked to the new Quartz code (location, size, etc.). Regards, Rob On Apr 9, 2008, at 2:27 PM, Peter Cowan wrote: Hi all, My first message bounced so I

Re: [R-SIG-Mac] [Rd] MacOSX R.app do not save history (PR#10850)

2008-02-27 Thread Rob Goedman
in the .Rhistory file. .Rdata is saved correctly. History works just fine in command line application. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-devel On Jan 14, 2008, at 4:21 PM, Rob Goedman wrote: Roger

Re: [R-SIG-Mac] Applescript plans

2008-02-11 Thread Rob Goedman
Hi, On Feb 11, 2008, at 6:07 AM, Simon Urbanek wrote: On Feb 10, 2008, at 2:26 PM, Erich Neuwirth wrote: Are there any plans to extend the Applescript facilities in R? Yes, we plan a new AS interface for the GUI 2.0. Right now we are in the process of collecting ideas as of what could be

Re: [R-SIG-Mac] Find bug

2008-02-06 Thread Rob Goedman
Demitri, Tonight's GUI build should fix this bug. Thanks for reporting it. Rob On Jan 17, 2008, at 2:36 AM, [EMAIL PROTECTED] wrote: Hi, Just a quick bug report. Open an R editor with some text and make that the front window. Search for a string. The string is found as expected, but

Re: [R-SIG-Mac] help: R on Mac's is buggy, department reconsidering

2008-01-31 Thread Rob Goedman
Matthew, Thanks for your input. As some others noted, we might need some more input to really be able to work on this problem. I do know of a sure way to crash R.app (up to R-2.7-devel). Below very simple lattice graphics example will crash R.app after switching to the display to full screen

Re: [R-SIG-Mac] Applescript window selection question

2008-01-20 Thread Rob Goedman
Hi Mandy, It's a while since I played around with Smultron. Command-B in Smultron opens the Commands pane. There are some examples of commands available. If you define a new command collection, e.g. R, a command name, e.g. 'Source file', and place in the command window (lower half of right