Actually, the function residuals.gls calculates 3 different types of
residuals: response or raw residuals, pearson or standardized
residuals, and normalized residuals. For diagnostic purposes, you
probably want the normalized residuals. The default is the response
residuals (although the
Dear List,
I am new to R, and hope someone can kindly help with the following
task. I have a Bayesian sample of trees in nexus format and discrete
data; example trees and data are at the bottom of the email. I would
like to use fitDiscrete in geiger to estimate parameter lambda for all
variables.
