Hi Gustavo,
Grafen's method is partially implemented in ape. The function corGrafen
defines a correlation structure according to Grafen's method (see
?corClasses for all corStruct defined in ape). When used with nlme::gls
this makes possible to estimate the parameter of the branch length
Hi Emmanuel,
thanks for information.
I really think it might be possible to obtain very similar results with both
packages (ape - phyreg)
However, I`m not sure that the math is the same.
It uses branch lengths to account for recog- nised phylogeny (which makes the
errors of more closely
R-sig-phylo community:
We announce the release of BAMM and BAMMtools, a Bayesian framework for the
analysis of speciation, extinction, and trait evolution on phylogenetic trees
(www.bamm-project.org). BAMM is oriented entirely towards detecting and
quantifying heterogeneity in
Dear Dan,
does BAMM can work using NON ultrametric trees?
Thanks
paolo
Da: r-sig-phylo-boun...@r-project.org r-sig-phylo-boun...@r-project.org per
conto di Dan Rabosky drabo...@umich.edu
Inviato: venerdì 7 marzo 2014 17.40
A: r-sig-phylo@r-project.org
Hi all,
Does anybody know if the the latest version of NCL support the phyloxml
format? I know that there was a google summer of code project to implement
it but I don't know if it was completed and integrated into NCL. If it's
the case, I'd be happy to update phylobase so these trees can be
Hi,
That GSoC project was not completed, so there is still no XML-format
support in NCL.
cheers,
mark
On Fri, Mar 7, 2014 at 1:59 PM, François Michonneau
francois.michonn...@gmail.com wrote:
Hi all,
Does anybody know if the the latest version of NCL support the phyloxml
format? I know
