Hi Gustavo,
This used to be possible, and you could possibly use an older version of
diversitree to do what you want to do. Things changed about a year, I
think.
Unfortunately, integrating time-varying functions efficiently is quite hard
when parameters vary as arbitrary R functions. I've
Hi there,
yes, the formats you mention are not designed for triploid data, but reading
your data in should be easy. Just use read.table or read.csv to read your file
in, then use df2genind to convert your data into a genind object, with sep=/
and ploidy=3.
Cheers
Thibaut
Hi,
I'm also curently developinga R package: https://github.com/giby/Linarius
that can be used for triploid… actually it is designed for mixed ploidy levels.
But right now, I focus on AFLP. As I told you there is much more thing
availlable for microsatelites.
Benjamin
Le Vendredi
Hi VojtÄch,
The stable development version of the poppr package available on github
(https://github.com/grunwaldlab/poppr/tree/devel) can handle polyploid SSR data
based on Bruvo's distance. Download instructions are available here:
Hi Richard,
Thank you very much for the information! I will do my best to do it by
myself, and will let you know if it worked or if I will need some more
help.
Thanks once again for the help!
Cheers,
On May 30, 2014 5:19 AM, Rich FitzJohn rich.fitzj...@gmail.com wrote:
Hi Gustavo,
This used
