Yes, it was easy, thank You for pointing me in the good direction.
ssrs3n.table - read.table(ssrs3n.txt, header=TRUE, sep=\t, quote= ,
dec=., row.names=1)
ssrs3n.populations - read.table(populations.txt, header=TRUE)
ssrs3n.pops - ssrs3n.populations[,1]
ssrs3n.genind - df2genind(ssrs3n.table,
Hi Jon,
So there are are a few ways I can imagine doing this. One thing you should
probably not do though is rescale the branches of the tree directly, at least
in the case of OU, as this leads to incorrect covariances for pairs of taxa
where one or either does not survive to the present day
Hi Jon,
Take a look at the mvSHIFT function in mvMORPH. This is typically what you
are looking for and you can use it with non-ultrametric trees (it's maybe
faster than classic functions).
Best,
Julien
Date: Mon, 2 Jun 2014 14:55:06 -0500
From: mitchel...@uchicago.edu
To:
Julien-
Does mvSHIFT account for the OU rescaling issue on non-ultrametric
trees that Graham mentions? If so, how?
Cheers,
-Dave
On Mon, Jun 2, 2014 at 5:26 PM, Julien Clavel julien.cla...@hotmail.fr wrote:
Hi Jon,
Take a look at the mvSHIFT function in mvMORPH. This is typically what you
