Re: [R-sig-phylo] mixed phylogenetic model in MCMCglmm

any levels of group are there and > what do you mean by crazy? > > Cheers, > > Jarrod > > > > On 12 Oct 2019, at 04:54, Oscar Inostroza > wrote: > > > > I'm trying to run a mixed phylogenetic model using the function in the > > MCMCglmm R pac

[R-sig-phylo] mixed phylogenetic model in MCMCglmm

I'm trying to run a mixed phylogenetic model using the function in the MCMCglmm R package of the same name. In this model, I want to estimate slopes and intercepts for each level of a given variable (modeled as a random effect). I tried to run the model with the following code. However, the

[R-sig-phylo] Phylogenetic varying slopes and intercepts model

Hi, everybody I’m trying to fit a phylogenetic model to model the relationship between x and y (eg. lmer syntax: y~x +(1|species), species with their respective var-covar matrix). Given that species are grouped into major categories (families, orders, etc), What is the correct way to account for

Re: [R-sig-phylo] GeoSSE question

8025 Website: www.sites.google.com/site/santiagosnchezrmirez/ Message: 4 Date: Sat, 11 Apr 2015 04:13:54 -0300 From: Oscar Inostroza oskinostr...@gmail.com To: r-sig-phylo@r-project.org Subject: [R-sig-phylo] GeoSSE question Message-ID: CADG1FwswSVqEWCnZ1ZTmPptDcpXq0Ln7s80AWR-4eK45=vk

[R-sig-phylo] GeoSSE question

Hi all, Im writing to ask aabout Geosse function (Goldberg et al, 2011; Syst Biol) implemented in the diversitree. R package. Is possible to extend extend this function to consider more than two areas? If anyone knows and I could help me, I would be very grateful best regards -- Oscar

Re: [R-sig-phylo] PGLS with discrete binary independent variable?

https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Oscar Inostroza Michael Biólogo Programa Magister Ciencias (m) Zoología Laboratorio de Ecología Evolutiva y Filoinformática Facultad de Ciencias Naturales Y

[R-sig-phylo] trouble with quasse function

you very much!! -- Oscar Inostroza Michael Biólogo Programa Magister Ciencias (m) Zoología Laboratorio de Ecología Evolutiva y Filoinformática Facultad de Ciencias Naturales Y Oceanográficas Universidad de Concepción Barrio Universitario s/n, Casilla 160-C Concepción, CHILE Fono Oficina: (56) 41

Re: [R-sig-phylo] ancestral estimation under OU model

://blog.phytools.org On 11/8/2013 6:52 PM, Oscar Inostroza wrote: Hi All Currently ancestral state reconstruction for continuous characters is done only in Brownian motion or BM wthit a trend (e.g. phytools; Liam Revell). So I would ask , is there any way to estimate ancestral states (continuous data

[R-sig-phylo] phylogenetic correlation between multistate character

Hello everyone!, I Hope you are very fine. I write to know if anyone knows of any method that allows to study the correlated evolution of multistate characters? greetings and thanks in advance -- Oscar Inostroza Michael Biólogo Programa Magister Ciencias (m) Zoología Laboratorio de Ecología

[R-sig-phylo] Problem with fitContinuous function

model and alpha to OU model). anyone know why this happens and how to fix it? p.s. the problem persists even when I apply a transformation to the data (e.g. log) -- Oscar Inostroza Michael Biólogo Programa Magister Ciencias (m) Zoología Laboratorio de Ecología Evolutiva y Filoinformática Facultad de

[R-sig-phylo] parallelize diversitree

these analyzes Greetings and thanks in advance -- Oscar Inostroza Michael Biólogo Programa Magister Ciencias (m) Zoología Laboratorio de Ecología Evolutiva y Filoinformática Facultad de Ciencias Naturales Y Oceanográficas Universidad de Concepción Barrio Universitario s/n, Casilla 160-C Concepción, CHILE

Re: [R-sig-phylo] assigning branch lengths to supertree

instructions (README.pdf) and a tutorial for the method. I'd be happy to address particular questions that you might have. Jon -- Oscar Inostroza Michael Biólogo Laboratorio de Ecología Evolutiva y Filoinformática Facultad de Ciencias Naturales Y Oceanográficas Universidad de Concepción Barrio

[R-sig-phylo] assign branch length to supertree

you very much beforehand -- Oscar Inostroza Michael Biólogo Laboratorio de Ecología Evolutiva y Filoinformática Facultad de Ciencias Naturales Y Oceanográficas Universidad de Concepción Barrio Universitario s/n, Casilla 160-C Concepción, CHILE Fono Oficina: (56) 41 - 220 – 7325 e-mail

[R-sig-phylo] diversification analysis questions

Hi all I write to ask a simple question, anyone know how to plot the parameters obtained by applying the different diversification models implemented in the program laser of Rabosky ??. if anyone can guide me would be very nice cheers! -- Oscar Inostroza Michael Biólogo Laboratorio de

[R-sig-phylo] urgent question

p.s. if someone is willing to help to contact me for inclusion in the job so, since it only needed to submit to a journal ISI of the area -- Oscar Inostroza Michael Biólogo Laboratorio de Ecología Molecular y Filoinformática Facultad de Ciencias Naturales Y Oceanográficas Universidad de Concepción

[R-sig-phylo] urgent question

p.s. if someone is willing to help to contact me for inclusion in the job so, since it only needed to submit to a journal ISI of the area -- Oscar Inostroza Michael Biólogo Laboratorio de Ecología Molecular y Filoinformática Facultad de Ciencias Naturales Y Oceanográficas Universidad de Concepción

[R-sig-phylo] help

, so i try ocuping a ultrametric tree, but the program give me other error: the tree dont have branch length. so I'm very confused why i need a ultrametric tree or a tree with branches length ?? if someone can guide me I will be very grateful -- Oscar Inostroza Michael Biólogo Laboratorio de