Hi David,
phangorn has the function consensusNet that builds consensus networks
(objects of class "networx") which is more appropriate than
ape::consensus is p < 0.5. There is a nice plotting function using RGL
for "networx" objects. Of course, you won't get a fully bifurcating tree
if there
David Bapst asked:
>
> I was interested if anyone was familiar with R code that can estimate an
> extended majority consensus tree (referred to as an 'allcompat' tree by the
> sumt command in MrBayes)? This is a fully bifurcating summary of a tree
> posterior, where each clade is maximally
Hi all,
I was interested if anyone was familiar with R code that can estimate an
extended majority consensus tree (referred to as an 'allcompat' tree by the
sumt command in MrBayes)? This is a fully bifurcating summary of a tree
posterior, where each clade is maximally resolved by the split that