Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6

There appears to be some issues with ggtree plotting BEAST output - I just tried to run through the example and got the following errors: source("https://bioconductor.org/biocLite.R;) biocLite("ggtree") require("ggtree") > file <- system.file("extdata/BEAST", "beast_mcc.tree",

Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6

Whoops! nevermind. It appears read.beast was being masked from read.beast in phyloch. Working now. Jake > On Dec 11, 2015, at 12:56 PM, Jacob Berv > wrote: > > There appears to be some issues with ggtree plotting BEAST output - I just > tried to run through

Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6

Dear Roger, ggtree can parse BEAST output and visualize BEAST statistics, see the document: http://www.bioconductor.org/packages/3.2/bioc/vignettes/ggtree/inst/doc/ggtree.html#annotating-tree-with-beast-output Bests, Guangchuang On Thu, Dec 10, 2015 at 7:00 PM,